mRNA_H-paniculata_contig29984.8135.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29984.8135.1
Unique NamemRNA_H-paniculata_contig29984.8135.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29984.8135.1 vs. uniprot
Match: A0A6H5JIN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN4_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 6.170e-40
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = 1
Query:    1 RILVPEATDQWLWIVILGAFGAFFAAFGIGANDVANAFATSVGAKAITLRQAVAFAAIFEFLGALLLGSHVTDTIRSKIADV 246
            RILVPE TDQ+LWI+I+GAFGAFFAAFGIGANDVANAFATSVGAKA+T++QAV  A IFEFLGA+ LGSHVT TIRS IADV
Sbjct:    9 RILVPETTDQFLWILIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVILAGIFEFLGAVFLGSHVTKTIRSGIADV 90          
BLAST of mRNA_H-paniculata_contig29984.8135.1 vs. uniprot
Match: D7G5U7_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U7_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 3.100e-37
Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 1
Query:    1 RILVPEATDQWLWIVILGAFGAFFAAFGIGANDVANAFATSVGAKAITLRQAVAFAAIFEFLGALLLGSHVTDTIRSKIADV 246
            RIL PEATDQ+LWI+I+ AFGAFFAAFGIGANDVANAFATSVGAKA+T++QAV  A +FEFLGA+ LGSHVT TIR  IAD+
Sbjct:   34 RILAPEATDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGVFEFLGAVFLGSHVTKTIRKGIADI 115          
BLAST of mRNA_H-paniculata_contig29984.8135.1 vs. uniprot
Match: D8LJQ3_ECTSI (Pho4 high affinity phosphate transporter, probable (IC) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ3_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 5.470e-35
Identity = 57/81 (70.37%), Postives = 70/81 (86.42%), Query Frame = 1
Query:    1 RILVPEATDQWLWIVILGAFGAFFAAFGIGANDVANAFATSVGAKAITLRQAVAFAAIFEFLGALLLGSHVTDTIRSKIAD 243
            R+L PEA+DQWLWIV++GAFG+F AAFGIGANDVANAF+TSVGA+A+TL+QA+  A +FEFLGALLLG+ VT  IR  I +
Sbjct:    8 RMLAPEASDQWLWIVVVGAFGSFLAAFGIGANDVANAFSTSVGARAVTLKQAIVLAGVFEFLGALLLGAPVTKAIRENIVN 88          
BLAST of mRNA_H-paniculata_contig29984.8135.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 5.690e-35
Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 1
Query:    1 RILVPEATDQWLWIVILGAFGAFFAAFGIGANDVANAFATSVGAKAITLRQAVAFAAIFEFLGALLLGSHVTDTIRSKIADV 246
            RIL PE TDQWLWI+I+ +FGAFFAAFGIGANDVANAFATSVGAKA+T++QAV  AAIFEF GA+ LGSHVT TIR  IAD+
Sbjct:    8 RILAPETTDQWLWILIVASFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAAIFEFAGAVFLGSHVTKTIRKGIADI 89          
BLAST of mRNA_H-paniculata_contig29984.8135.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 8.000e-35
Identity = 66/81 (81.48%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    1 RILVPEATDQWLWIVILGAFGAFFAAFGIGANDVANAFATSVGAKAITLRQAVAFAAIFEFLGALLLGSHVTDTIRSKIAD 243
            RIL PE TD +LWIVI+GAFGAFFAAFGIGANDVANAFATSVGAKA+T++QAV  A IFEFLGA+ LGSHVT TIRS IAD
Sbjct:    9 RILAPETTDHFLWIVIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVFLGSHVTKTIRSGIAD 89          
BLAST of mRNA_H-paniculata_contig29984.8135.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 5.790e-33
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    1 RILVPEATDQWLWIVILGAFGAFFAAFGIGANDVANAFATSVGAKAITLRQAVAFAAIFEFLGALLLGSHVTDTIRSKIADV 246
            RIL P+ T+ +LWI+I+G FGAFFAAFGIGANDVANAFATSVGAKA+TLRQAV  A IFEFLGA+ LGSHVT TIRS  AD+
Sbjct:    9 RILAPDTTNGFLWILIVGTFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTSTIRSGTADI 90          
BLAST of mRNA_H-paniculata_contig29984.8135.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.520e-28
Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 RILVPEATDQWLWIVILGAFGAFFAAFGIGANDVANAFATSVGAKAITLRQAVAFAAIFEFLGALLLGSHVTDTIRSKIAD 243
            RIL P  T ++LWIVI+ + GA FAAFGIGAND+ANAFATSVGA+A+T++QAV  A +FEFLGA+ LGSHV  TIRS IAD
Sbjct:    9 RILAPAVTSEFLWIVIVSSIGAVFAAFGIGANDLANAFATSVGARALTIKQAVVLAGVFEFLGAVFLGSHVAKTIRSGIAD 89          
BLAST of mRNA_H-paniculata_contig29984.8135.1 vs. uniprot
Match: A0A6U1NDP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NDP7_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.770e-27
Identity = 53/74 (71.62%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   25 DQWLWIVILGAFGAFFAAFGIGANDVANAFATSVGAKAITLRQAVAFAAIFEFLGALLLGSHVTDTIRSKIADV 246
            D +LWIVI+G F A F A+GIGANDVANAF+TSVGAK +TL+QAV    IFEFLGA L GSHVT TIR  IADV
Sbjct:    7 DDYLWIVIVGGFLAVFTAYGIGANDVANAFSTSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGIADV 80          
BLAST of mRNA_H-paniculata_contig29984.8135.1 vs. uniprot
Match: A0A382CG81_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382CG81_9ZZZZ)

HSP 1 Score: 105 bits (261), Expect = 8.250e-27
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 1
Query:   10 VPEATDQWLWIVILGAFGAFFAAFGIGANDVANAFATSVGAKAITLRQAVAFAAIFEFLGALLLGSHVTDTIRSKIADVS 249
            + E TD +LWI IL  F +FF ++GIGAND AN+FATSVGAK +TLRQAV  AAIFEF GA L+GSHVTDT+R KI D S
Sbjct:    8 IMELTD-YLWIPILCTFASFFTSWGIGANDCANSFATSVGAKVLTLRQAVLVAAIFEFTGAFLMGSHVTDTVRKKIVDNS 86          
BLAST of mRNA_H-paniculata_contig29984.8135.1 vs. uniprot
Match: D8LJQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ0_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 4.400e-26
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 RILVPEATDQWLWIVILGAFGAFFAAFGIGANDVANAFATSVGAKAITLRQAVAFAAIFEFLGALLLGSHVTDTIRSKIADVSA 252
            R+L PEAT QWLWIV + + GA  AA GIGANDVAN+FATSVG+KA+TL++A+  A I EF GALLLG      I   IAD  A
Sbjct:    9 RVLAPEATGQWLWIVSVASLGALCAALGIGANDVANSFATSVGSKALTLKKALLLAGICEFFGALLLGRQAMTAISESIADDEA 92          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29984.8135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIN4_9PHAE6.170e-4082.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5U7_ECTSI3.100e-3778.05High affinity phosphate transporter n=1 Tax=Ectoca... [more]
D8LJQ3_ECTSI5.470e-3570.37Pho4 high affinity phosphate transporter, probable... [more]
A0A6H5JNE7_9PHAE5.690e-3578.05Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI8.000e-3581.48Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI5.790e-3376.83Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FWT9_ECTSI1.520e-2869.14Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A6U1NDP7_9STRA6.770e-2771.62Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A382CG81_9ZZZZ8.250e-2767.50Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
D8LJQ0_ECTSI4.400e-2660.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29984contigH-paniculata_contig29984:82..348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.4e-27
Seed eggNOG ortholog2880.D7G0K9
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
Ec32 ortholog descriptionPhosphate transporter
Ec32 orthologEc-17_002900.1
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929915.6878037-CDS-H-paniculata_contig29984:81..3481622929915.6878037-CDS-H-paniculata_contig29984:81..348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29984 82..348 -
1691481067.8732328-CDS-H-paniculata_contig29984:81..3481691481067.8732328-CDS-H-paniculata_contig29984:81..348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29984 82..348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29984.8135.1prot_H-paniculata_contig29984.8135.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29984 82..348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29984.8135.1

>prot_H-paniculata_contig29984.8135.1 ID=prot_H-paniculata_contig29984.8135.1|Name=mRNA_H-paniculata_contig29984.8135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
RILVPEATDQWLWIVILGAFGAFFAAFGIGANDVANAFATSVGAKAITLR
QAVAFAAIFEFLGALLLGSHVTDTIRSKIADVSAAVVP*
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mRNA from alignment at H-paniculata_contig29984:82..348-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29984.8135.1 ID=mRNA_H-paniculata_contig29984.8135.1|Name=mRNA_H-paniculata_contig29984.8135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig29984:82..348- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTATCCTGGTGCCTGAGGCGACCGACCAGTGGTTATGGATCGTGATACT TGGAGCTTTCGGCGCCTTTTTCGCCGCGTTCGGCATTGGCGCAAATGATG TAGCTAACGCGTTCGCAACTTCGGTCGGCGCCAAGGCGATCACCCTGCGC CAGGCTGTCGCCTTTGCTGCCATCTTCGAGTTTCTGGGAGCCTTGCTACT GGGGAGTCATGTCACCGATACCATTCGCAGTAAGATCGCGGACGTGAGTG CTGCAGTAGTACCATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig29984:82..348-

>mRNA_H-paniculata_contig29984.8135.1 ID=mRNA_H-paniculata_contig29984.8135.1|Name=mRNA_H-paniculata_contig29984.8135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig29984:82..348- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTATCCTGGTGCCTGAGGCGACCGACCAGTGGTTATGGATCGTGATACT
TGGAGCTTTCGGCGCCTTTTTCGCCGCGTTCGGCATTGGCGCAAATGATG
TAGCTAACGCGTTCGCAACTTCGGTCGGCGCCAAGGCGATCACCCTGCGC
CAGGCTGTCGCCTTTGCTGCCATCTTCGAGTTTCTGGGAGCCTTGCTACT
GGGGAGTCATGTCACCGATACCATTCGCAGTAAGATCGCGGACGTGAGTG
CTGCAGTAGTACCATAGCGTATCCTGGTGCCTGAGGCGACCGACCAGTGG
TTATGGATCGTGATACTTGGAGCTTTCGGCGCCTTTTTCGCCGCGTTCGG
CATTGGCGCAAATGATGTAGCTAACGCGTTCGCAACTTCGGTCGGCGCCA
AGGCGATCACCCTGCGCCAGGCTGTCGCCTTTGCTGCCATCTTCGAGTTT
CTGGGAGCCTTGCTACTGGGGAGTCATGTCACCGATACCATTCGCAGTAA
GATCGCGGACGTGAGTGCTGCAGTAGTACCATAG
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