prot_H-paniculata_contig2969.8068.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2969.8068.1
Unique Nameprot_H-paniculata_contig2969.8068.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length271
Homology
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: A0A6H5KKW4_9PHAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW4_9PHAE)

HSP 1 Score: 374 bits (959), Expect = 4.610e-128
Identity = 191/241 (79.25%), Postives = 205/241 (85.06%), Query Frame = 0
Query:    1 MEFPGAPEDPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDWAWQKEAKALQEAAESAXXXXXXXXXVVSEEDQNIASALKLSVDNILMGLVEKHIDGDGGG-------SRGVKRKA 234
            MEFPGA EDPE  SFIDPVWLQQWGLGP+NALDYFALSPFYDK+CNNEQCRMQ VDPREGL NLTGLEFML +LP EMSFL PGQP P GPQPRRLFVIKKQ+RKSPSSVEVQAIYYIMEG IYQAPTVQKLIKSRL+KFTHHLNNAFVELSKLA+L  SGGGYDWAWQKEAK LQE AE+A          V+EED++  +ALKLS+DNILMGLVEK+IDGDG G       +RG KRKA
Sbjct:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQSVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVG------VAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKA 235          
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: D7G6X0_ECTSI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X0_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 2.350e-92
Identity = 134/150 (89.33%), Postives = 139/150 (92.67%), Query Frame = 0
Query:    1 MEFPGAPEDPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVE 150
            M+FPGA EDPE  SFIDPVWLQQWGLGPENALDYFALSPFYDK+CNNEQCRMQGVDPREGL NLTGLEFML +LP EMSFL PGQP P GPQPRRLFVIKKQ+RKSPSSVEVQAIYYIMEG IYQAPTVQKLIKSRL+KFTHHLNNAF E
Sbjct:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFGE 150          
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: A0A835YVL9_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL9_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.580e-46
Identity = 105/221 (47.51%), Postives = 135/221 (61.09%), Query Frame = 0
Query:    8 EDPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGV-DPREGLKNLTGLEFMLEDLPQEMSFLA-PGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDWAWQKEAKALQEAAESAXXXXXXXXXVVSEEDQNIASALKLSVDNILMGLVEKHIDGDGGG 226
            ED   +SF D +WL+ + LGPE A+DYFALSPFYD++ NNE CRMQG+ D    ++ +TG+E+++E+LP E   L  PG P    PQPR L VIKKQ RKS +  EV+ +YYIM+G IYQAP+   LI SRL K    L+ +F  L  L   NA G  YDW W  EA          XXXXXXXXX    + Q   SA++   D IL+ LV ++   +G G
Sbjct:   16 EDQTQLSFQDTMWLRSFYLGPETAIDYFALSPFYDRTSNNELCRMQGLTDHVAAMQTMTGIEYVVEELPPETDELPEPGAP----PQPRHLMVIKKQYRKSKTQAEVRGVYYIMDGTIYQAPSALALITSRLQKAAFMLSESFAALRALPAHNARGA-YDWPWNAEAXXXX-----XXXXXXXXXXXXXXQSQAALSAVRAGADAILLQLVSRYARSEGEG 226          
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: M4C4K5_HYAAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K5_HYAAE)

HSP 1 Score: 126 bits (316), Expect = 2.060e-31
Identity = 81/219 (36.99%), Postives = 120/219 (54.79%), Query Frame = 0
Query:    6 APEDPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDWAWQKEAKALQEA---AESAXXXXXXXXXVVSEEDQNIASALKLSVDNILMGLVEKH 219
            A  D    SF D VWLQ + L P+  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L  LP     L           P++L+VI+KQ R S + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+     + + G   +AW   +K  +E    +E            + ++ +N A      VD+IL+ L++KH
Sbjct:    5 AHADDYNASFRDTVWLQSFPLNPQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGIEYEL--LPNAAKQL-----------PQQLYVIRKQRRSSRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSAR-----VDSILIQLMKKH 199          
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: A0A2R5GW25_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW25_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.520e-30
Identity = 75/172 (43.60%), Postives = 104/172 (60.47%), Query Frame = 0
Query:   13 ISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGVDPREGLKNLTGLEFMLEDLPQEMSF-LAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDWAWQKEA-KALQEAAESA 182
            +SF+D  W++ +GL   N LDYFA SPFYD SCNNE  RMQ +          GLE ML D+P  + + L P    PV      LF++ KQ R S + V  QA+YYI++  IYQAP++Q+LI +RL K T+HL NAF ++ K A   A   G+ W +  +A +A +++AE A
Sbjct:   64 VSFLDDNWIRAFGLSAHNVLDYFACSPFYDTSCNNEILRMQNL----------GLE-MLADMPPGIEYRLLPSGHEPV------LFIVVKQERASKTVVRRQALYYILDKVIYQAPSLQRLIATRLSKSTNHLQNAFDQMVKAARY-APSQGFTWHFDGDAHRAWRQSAEGA 217          
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: D0NQQ4_PHYIT (Mediator of RNA polymerase II transcription subunit 6 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NQQ4_PHYIT)

HSP 1 Score: 121 bits (303), Expect = 1.210e-29
Identity = 77/216 (35.65%), Postives = 115/216 (53.24%), Query Frame = 0
Query:    9 DPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDWAWQKEAKALQEA---AESAXXXXXXXXXVVSEEDQNIASALKLSVDNILMGLVEKH 219
            D    SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L              P      P++LF+I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+     + + G   +AW   +K  +E    +E            + ++ +N A      VD+IL+ L++KH
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYEL-------------LPNTAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG---YAWDFSSKDKKEPVIPSEQLQLKLKQKYEKMEKQRENSAR-----VDSILIQLMKKH 199          
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: A0A8K1CUM6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUM6_PYTOL)

HSP 1 Score: 120 bits (300), Expect = 4.660e-29
Identity = 77/214 (35.98%), Postives = 116/214 (54.21%), Query Frame = 0
Query:    9 DPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDWAWQKEA-KALQEAAESAXXXXXXXXXVVSEEDQNIASALKLSVDNILMGLVEKH 219
            D    SF D +WLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKN+ G+E+ L  LP     L           P++LF+I+KQ R   + V+  A+YY+++G +YQAP +  ++ SRL K +H +N AF  L+     + + G Y W +  E  KA    +E            + ++ +N A      VD+IL+ L++KH
Sbjct:    8 DDYNASFHDTIWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNMRGIEYEL--LPNAAKQL-----------PQQLFLIQKQRRLGRTQVKPLAVYYVLDGRVYQAPNIHAMLTSRLKKCSHRVNKAFHALAAGVRFSPTEG-YAWDFSSEDNKAPVIPSEQLQLKLKQKFEKMEKQRENSAR-----VDSILIRLMKKH 199          
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: A0A484EGT8_BRELC (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT8_BRELC)

HSP 1 Score: 115 bits (289), Expect = 2.700e-28
Identity = 64/158 (40.51%), Postives = 92/158 (58.23%), Query Frame = 0
Query:    9 DPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDW 166
            D    SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ +   E LKNL G+E+ L  LP     L           P++L++I+KQ R   + VE  A+YY+++G +YQAP +  ++ SRL K ++ +N AF  L+     + + G Y W
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LEQLKNLRGVEYEL--LPNAAKQL-----------PQQLYIIRKQRRNGRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAW 150          
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: K3WSB9_GLOUD (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB9_GLOUD)

HSP 1 Score: 117 bits (294), Expect = 4.060e-28
Identity = 75/216 (34.72%), Postives = 117/216 (54.17%), Query Frame = 0
Query:    9 DPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELSKLAELNASGGGYDWAWQKEAKALQEA---AESAXXXXXXXXXVVSEEDQNIASALKLSVDNILMGLVEKH 219
            D    SF D +WLQ + L  +  + YFALSPFYD+SCNNE+ +MQ  G+D    LKN+ G+E+  E LP     L           P++LF+I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+     + + G   +AW   +K  +E    +E            + ++ ++ A      VD+IL+ L++KH
Sbjct:    8 DDYNASFRDTMWLQSFPLNAQTVIHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNMRGIEY--EVLPNTAKQL-----------PQQLFLIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHTLAAGVRFSPTEG---YAWDFSSKDKKEPIIPSEQLQLKLKQKYEKIEKQREHSAR-----VDSILIQLMKKH 199          
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Match: A0A0N7L744_PLAHL (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L744_PLAHL)

HSP 1 Score: 114 bits (285), Expect = 6.430e-28
Identity = 66/154 (42.86%), Postives = 92/154 (59.74%), Query Frame = 0
Query:    1 MEFPGAPEDPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIKKQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVELS 152
            ME  G  +D    SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L  LP     L           P++L++I+KQ R   + VE  AIYY+++G +YQAP +  ++ SRL K ++ +N AF  L+
Sbjct:    1 MEVAGHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYEL--LPNAAKQL-----------PQQLYIIRKQRRNGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLA 137          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2969.8068.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKW4_9PHAE4.610e-12879.25Mediator of RNA polymerase II transcription subuni... [more]
D7G6X0_ECTSI2.350e-9289.33Mediator of RNA polymerase II transcription subuni... [more]
A0A835YVL9_9STRA1.580e-4647.51Mediator of RNA polymerase II transcription subuni... [more]
M4C4K5_HYAAE2.060e-3136.99Mediator of RNA polymerase II transcription subuni... [more]
A0A2R5GW25_9STRA2.520e-3043.60Mediator of RNA polymerase II transcription subuni... [more]
D0NQQ4_PHYIT1.210e-2935.65Mediator of RNA polymerase II transcription subuni... [more]
A0A8K1CUM6_PYTOL4.660e-2935.98Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484EGT8_BRELC2.700e-2840.51Mediator of RNA polymerase II transcription subuni... [more]
K3WSB9_GLOUD4.060e-2834.72Mediator of RNA polymerase II transcription subuni... [more]
A0A0N7L744_PLAHL6.430e-2842.86Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038566Med6 core domain superfamilyGENE3D3.10.450.580coord: 6..152
e-value: 1.9E-37
score: 129.9
IPR007018Mediator complex, subunit Med6PFAMPF04934Med6coord: 13..156
e-value: 3.5E-40
score: 136.9
IPR007018Mediator complex, subunit Med6PANTHERPTHR13104MED-6-RELATEDcoord: 8..231
NoneNo IPR availablePANTHERPTHR13104:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6coord: 8..231

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2969contigH-paniculata_contig2969:4718..8372 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2969.8068.1mRNA_H-paniculata_contig2969.8068.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2969 4629..8836 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2969.8068.1 ID=prot_H-paniculata_contig2969.8068.1|Name=mRNA_H-paniculata_contig2969.8068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp
MEFPGAPEDPETISFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQC
RMQGVDPREGLKNLTGLEFMLEDLPQEMSFLAPGQPTPVGPQPRRLFVIK
KQMRKSPSSVEVQAIYYIMEGNIYQAPTVQKLIKSRLDKFTHHLNNAFVE
LSKLAELNASGGGYDWAWQKEAKALQEAAESAAAVGGGAGGVVSEEDQNI
ASALKLSVDNILMGLVEKHIDGDGGGSRGVKRKAATPPSTTARAGGAVSA
ASDVPVANNVASGIPVPGTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038566Med6_sf
IPR007018Mediator_Med6