mRNA_H-paniculata_contig29650.8055.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig29650.8055.1
Unique NamemRNA_H-paniculata_contig29650.8055.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig29650.8055.1 vs. uniprot
Match: A0A6H5KPS7_9PHAE (HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPS7_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 2.190e-63
Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 1
Query:    1 GNRTTPSYVAFTDTERLIGDAAKNQVAMNATNTVFDAKRLIGRRFSDPAVTSDMKHWPFDVVEGSGGKPIIEVSFKGERKQFAPEEVSSMVLVKMKEIAEAYLGKE 318
            GNRTTPSYVAFT+TERLIGDAAKNQVAMNATNTVFDAKRLIGRR++DPAV SD KHWPF VVEG GGKP IEVSFKGE+KQFAPEE+SSMVLVKMKEIAEAYLGKE
Sbjct:   36 GNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYTDPAVASDKKHWPFHVVEGPGGKPTIEVSFKGEKKQFAPEEISSMVLVKMKEIAEAYLGKE 141          
BLAST of mRNA_H-paniculata_contig29650.8055.1 vs. uniprot
Match: A0A6H5JJT8_9PHAE (HSP70 protein n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5JJT8_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 4.110e-59
Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = 1
Query:    1 GNRTTPSYVAFTDTERLIGDAAKNQVAMNATNTVFDAKRLIGRRFSDPAVTSDMKHWPFDVVEGSGGKPIIEVSFKGERKQFAPEEVSSMVLVKMKEIAEAYLGKEVRGVI 333
            GNRTTPSYVAFT+TERLIGDAAKNQVAMNATNTVFDAKRLIGRR++DPAV SD KHWPF VVEG GGKP IEVSFKGE+KQFAPEE+SSMVLVKMKEIAEAYLGKEV+  +
Sbjct:   36 GNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYTDPAVASDKKHWPFHVVEGPGGKPTIEVSFKGEKKQFAPEEISSMVLVKMKEIAEAYLGKEVKNAV 146          
BLAST of mRNA_H-paniculata_contig29650.8055.1 vs. uniprot
Match: Q2TTE3_9STRA (HSP70 (Fragment) n=1 Tax=Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 TaxID=289359 RepID=Q2TTE3_9STRA)

HSP 1 Score: 191 bits (484), Expect = 5.640e-58
Identity = 91/111 (81.98%), Postives = 100/111 (90.09%), Query Frame = 1
Query:    1 GNRTTPSYVAFTDTERLIGDAAKNQVAMNATNTVFDAKRLIGRRFSDPAVTSDMKHWPFDVVEGSGGKPIIEVSFKGERKQFAPEEVSSMVLVKMKEIAEAYLGKEVRGVI 333
            GNRTTPSYVAF DTERLIGDAAKNQVAMNA NTVFDAKRLIGRRF+DP V +DMKHWPF V EG+GGKP I+V+FKGE KQFAPEEVSSMVL KMKEI+EAYLG+EV+  +
Sbjct:    4 GNRTTPSYVAFNDTERLIGDAAKNQVAMNAANTVFDAKRLIGRRFNDPVVQADMKHWPFKVTEGAGGKPTIQVAFKGEVKQFAPEEVSSMVLTKMKEISEAYLGREVKNAV 114          
BLAST of mRNA_H-paniculata_contig29650.8055.1 vs. uniprot
Match: A0A6H5KQY2_9PHAE (HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY2_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 5.910e-58
Identity = 96/111 (86.49%), Postives = 103/111 (92.79%), Query Frame = 1
Query:    1 GNRTTPSYVAFTDTERLIGDAAKNQVAMNATNTVFDAKRLIGRRFSDPAVTSDMKHWPFDVVEGSGGKPIIEVSFKGERKQFAPEEVSSMVLVKMKEIAEAYLGKEVRGVI 333
            GNRTTPSYVAFT+TERLIGDAAKNQVAMNATNTVFDAKRLIGR+F+DPAV SD KHWPF VV G GGKP IEVSFKGE+KQFAPEE+SSMVLVKMKEIAEAYLGKEV+  +
Sbjct:   36 GNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRKFTDPAVASDKKHWPFSVVAGPGGKPTIEVSFKGEKKQFAPEEISSMVLVKMKEIAEAYLGKEVKNAV 146          
BLAST of mRNA_H-paniculata_contig29650.8055.1 vs. uniprot
Match: A0A7S2MA59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2MA59_9STRA)

HSP 1 Score: 183 bits (465), Expect = 4.380e-57
Identity = 88/111 (79.28%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 GNRTTPSYVAFTDTERLIGDAAKNQVAMNATNTVFDAKRLIGRRFSDPAVTSDMKHWPFDVVEGSGGKPIIEVSFKGERKQFAPEEVSSMVLVKMKEIAEAYLGKEVRGVI 333
            GNRTTPSYVAFT+TERLIGDAAK+Q AMNATNTVFDAKRLIGR+FSDP V SDMKHWPF V  G GG PIIEV +KGE KQF  EE+SSMVL KM+EIAEAYLGKEV+  +
Sbjct:   36 GNRTTPSYVAFTETERLIGDAAKSQAAMNATNTVFDAKRLIGRKFSDPGVQSDMKHWPFKVTPGPGGTPIIEVEYKGETKQFKAEEISSMVLTKMREIAEAYLGKEVKNAV 146          
BLAST of mRNA_H-paniculata_contig29650.8055.1 vs. uniprot
Match: A0A196SJW9_BLAHN (Heat shock protein (Fragment) n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SJW9_BLAHN)

HSP 1 Score: 182 bits (461), Expect = 1.180e-56
Identity = 86/111 (77.48%), Postives = 97/111 (87.39%), Query Frame = 1
Query:    1 GNRTTPSYVAFTDTERLIGDAAKNQVAMNATNTVFDAKRLIGRRFSDPAVTSDMKHWPFDVVEGSGGKPIIEVSFKGERKQFAPEEVSSMVLVKMKEIAEAYLGKEVRGVI 333
            G RTTPSYVAFTDTERLIGDAAKNQVAMN TNTVFDAKRLIGR+F DP+V SDMKHWPF +  G  GKP+IEV +KGE+K F+PEE+SSMVL KMK+IAEAYLGKEV+  +
Sbjct:   37 GQRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRKFDDPSVQSDMKHWPFTLKAGPDGKPLIEVEYKGEKKTFSPEEISSMVLSKMKQIAEAYLGKEVKNAV 147          
BLAST of mRNA_H-paniculata_contig29650.8055.1 vs. uniprot
Match: A0A7S2Y2B3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2B3_9STRA)

HSP 1 Score: 179 bits (455), Expect = 3.060e-56
Identity = 87/111 (78.38%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 GNRTTPSYVAFTDTERLIGDAAKNQVAMNATNTVFDAKRLIGRRFSDPAVTSDMKHWPFDVVEGSGGKPIIEVSFKGERKQFAPEEVSSMVLVKMKEIAEAYLGKEVRGVI 333
            GNRTTPSYVAFTDTERLIGDAAKNQVAMNA NTVFDAKRLIGRRF DP +  D+KH PF VV+G+GGKP+I+V FK E K FA EE+SSMVL KMKEIAEAYLGKEV+  +
Sbjct:   14 GNRTTPSYVAFTDTERLIGDAAKNQVAMNAANTVFDAKRLIGRRFDDPCLQDDLKHLPFKVVQGTGGKPMIQVEFKSEAKTFAAEEISSMVLSKMKEIAEAYLGKEVKNAV 124          
BLAST of mRNA_H-paniculata_contig29650.8055.1 vs. uniprot
Match: H6WB83_VAULI (Heat shock protein 70 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB83_VAULI)

HSP 1 Score: 193 bits (490), Expect = 4.490e-56
Identity = 92/111 (82.88%), Postives = 102/111 (91.89%), Query Frame = 1
Query:    1 GNRTTPSYVAFTDTERLIGDAAKNQVAMNATNTVFDAKRLIGRRFSDPAVTSDMKHWPFDVVEGSGGKPIIEVSFKGERKQFAPEEVSSMVLVKMKEIAEAYLGKEVRGVI 333
            GNRTTPSYVAFT+TERLIGDAAKNQVAMNATNTVFDAKRLIGRRF+D AV  DMKHWPF V++G GGKPII+V+FKGE K FAPEE+SSMVL+KMKEIAEAYLGKEV+  +
Sbjct:   36 GNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRFTDTAVQQDMKHWPFTVIQGPGGKPIIKVNFKGEEKTFAPEEISSMVLLKMKEIAEAYLGKEVKNAV 146          
BLAST of mRNA_H-paniculata_contig29650.8055.1 vs. uniprot
Match: A0A7S0Q9V9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q9V9_9EUKA)

HSP 1 Score: 181 bits (459), Expect = 1.090e-55
Identity = 85/111 (76.58%), Postives = 97/111 (87.39%), Query Frame = 1
Query:    1 GNRTTPSYVAFTDTERLIGDAAKNQVAMNATNTVFDAKRLIGRRFSDPAVTSDMKHWPFDVVEGSGGKPIIEVSFKGERKQFAPEEVSSMVLVKMKEIAEAYLGKEVRGVI 333
            GNRTTPSYVAF DTERLIGDAAKNQVAMNA+NTVFDAKRLIGR+F D  V +DMKHWPF V  G+ GKP+I V+FKGE KQF+ EE+SSMVL+KMKEIAEAYLG+EV+  +
Sbjct:   35 GNRTTPSYVAFNDTERLIGDAAKNQVAMNASNTVFDAKRLIGRKFEDAVVQADMKHWPFKVTTGTAGKPVINVTFKGEAKQFSSEEISSMVLIKMKEIAEAYLGREVKNAV 145          
BLAST of mRNA_H-paniculata_contig29650.8055.1 vs. uniprot
Match: W7TRP6_9STRA (Heat shock protein 70 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRP6_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.760e-55
Identity = 90/111 (81.08%), Postives = 103/111 (92.79%), Query Frame = 1
Query:    1 GNRTTPSYVAFTDTERLIGDAAKNQVAMNATNTVFDAKRLIGRRFSDPAVTSDMKHWPFDVVEGSGGKPIIEVSFKGERKQFAPEEVSSMVLVKMKEIAEAYLGKEVRGVI 333
            GNRTTPSYVAFT++ERLIGDAAKNQVAMNA+NTVFDAKRLIGRRFSDP V +DMKHWPF VV+G GGKP+I+V+FKGE K FAPEE+SSMVL+KM+EIAEAYLGKEV+  +
Sbjct:   37 GNRTTPSYVAFTESERLIGDAAKNQVAMNASNTVFDAKRLIGRRFSDPVVQADMKHWPFTVVQGPGGKPLIQVTFKGESKTFAPEEISSMVLIKMREIAEAYLGKEVKNAV 147          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29650.8055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPS7_9PHAE2.190e-6390.57HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JJT8_9PHAE4.110e-5987.39HSP70 protein n=10 Tax=Phaeophyceae TaxID=2870 Rep... [more]
Q2TTE3_9STRA5.640e-5881.98HSP70 (Fragment) n=1 Tax=Stramenopile sp. ex Nucle... [more]
A0A6H5KQY2_9PHAE5.910e-5886.49HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A7S2MA59_9STRA4.380e-5779.28Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A196SJW9_BLAHN1.180e-5677.48Heat shock protein (Fragment) n=1 Tax=Blastocystis... [more]
A0A7S2Y2B3_9STRA3.060e-5678.38Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
H6WB83_VAULI4.490e-5682.88Heat shock protein 70 n=1 Tax=Vaucheria litorea Ta... [more]
A0A7S0Q9V9_9EUKA1.090e-5576.58Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
W7TRP6_9STRA1.760e-5581.08Heat shock protein 70 n=2 Tax=Monodopsidaceae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29650contigH-paniculata_contig29650:2031..2366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.2
Seed ortholog evalue4.1e-48
Seed eggNOG ortholog2880.D8LI58
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0015630,GO:0031982,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.ATP binding
EggNOG OGsCOG0443@1,KOG0101@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929904.430346-CDS-H-paniculata_contig29650:2030..23661622929904.430346-CDS-H-paniculata_contig29650:2030..2366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29650 2031..2366 -
1691481062.9824758-CDS-H-paniculata_contig29650:2030..23661691481062.9824758-CDS-H-paniculata_contig29650:2030..2366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig29650 2031..2366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29650.8055.1prot_H-paniculata_contig29650.8055.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig29650 2031..2366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig29650.8055.1

>prot_H-paniculata_contig29650.8055.1 ID=prot_H-paniculata_contig29650.8055.1|Name=mRNA_H-paniculata_contig29650.8055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
GNRTTPSYVAFTDTERLIGDAAKNQVAMNATNTVFDAKRLIGRRFSDPAV
TSDMKHWPFDVVEGSGGKPIIEVSFKGERKQFAPEEVSSMVLVKMKEIAE
AYLGKEVRGVI*
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mRNA from alignment at H-paniculata_contig29650:2031..2366-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig29650.8055.1 ID=mRNA_H-paniculata_contig29650.8055.1|Name=mRNA_H-paniculata_contig29650.8055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at H-paniculata_contig29650:2031..2366- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAACCGAACCACACCTTCCTACGTGGCCTTCACCGACACTGAGCGTCT GATTGGCGATGCCGCTAAGAACCAGGTCGCGATGAACGCCACCAACACCG TCTTCGACGCCAAGCGGCTTATCGGGCGTCGTTTTAGCGACCCTGCGGTG ACGTCGGACATGAAGCATTGGCCTTTCGACGTTGTGGAGGGCTCAGGTGG AAAGCCCATCATCGAGGTGTCATTCAAGGGAGAGCGGAAGCAGTTTGCCC CAGAGGAGGTTTCTTCTATGGTGCTTGTGAAGATGAAGGAGATCGCCGAG GCTTACTTGGGCAAGGAGGTCAGAGGTGTCATCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig29650:2031..2366-

>mRNA_H-paniculata_contig29650.8055.1 ID=mRNA_H-paniculata_contig29650.8055.1|Name=mRNA_H-paniculata_contig29650.8055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig29650:2031..2366- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAACCGAACCACACCTTCCTACGTGGCCTTCACCGACACTGAGCGTCT
GATTGGCGATGCCGCTAAGAACCAGGTCGCGATGAACGCCACCAACACCG
TCTTCGACGCCAAGCGGCTTATCGGGCGTCGTTTTAGCGACCCTGCGGTG
ACGTCGGACATGAAGCATTGGCCTTTCGACGTTGTGGAGGGCTCAGGTGG
AAAGCCCATCATCGAGGTGTCATTCAAGGGAGAGCGGAAGCAGTTTGCCC
CAGAGGAGGTTTCTTCTATGGTGCTTGTGAAGATGAAGGAGATCGCCGAG
GCTTACTTGGGCAAGGAGGTCAGAGGTGTCATCTAGGGGAACCGAACCAC
ACCTTCCTACGTGGCCTTCACCGACACTGAGCGTCTGATTGGCGATGCCG
CTAAGAACCAGGTCGCGATGAACGCCACCAACACCGTCTTCGACGCCAAG
CGGCTTATCGGGCGTCGTTTTAGCGACCCTGCGGTGACGTCGGACATGAA
GCATTGGCCTTTCGACGTTGTGGAGGGCTCAGGTGGAAAGCCCATCATCG
AGGTGTCATTCAAGGGAGAGCGGAAGCAGTTTGCCCCAGAGGAGGTTTCT
TCTATGGTGCTTGTGAAGATGAAGGAGATCGCCGAGGCTTACTTGGGCAA
GGAGGTCAGAGGTGTCATCTAG
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