mRNA_H-paniculata_contig29560.8039.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig29560.8039.1 vs. uniprot
Match: A0A6H5JAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAM1_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 4.530e-22 Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 13 CICFGQVGISQVFHHALTAALYPIGPLLDAKTNQLRPRFDRAIRRLFRIYDRDGDGLLGDQELNSFQYESFRLNLSDEDIVVLKQV 270
C +GI+Q F+H TAALYP PL +A+ +L PRFDRA+RRLFRIYD D DGLL D ELN+FQ+ +FRL LS D+ L+++
Sbjct: 154 CSAVSGMGINQAFYHGRTAALYPRAPLYNAEEGRLCPRFDRAMRRLFRIYDVDRDGLLCDDELNAFQFHAFRLLLSASDLESLRKI 239
BLAST of mRNA_H-paniculata_contig29560.8039.1 vs. uniprot
Match: D8LB08_ECTSI (Miro-related GTP-ase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB08_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 8.610e-22 Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 1
Query: 13 CICFGQVGISQVFHHALTAALYPIGPLLDAKTNQLRPRFDRAIRRLFRIYDRDGDGLLGDQELNSFQYESFRLNLSDEDIVVLKQV 270
C +GI+Q F+H TAALYP PL +A+ +L PRFDRA+RRLFRI+D D DGLL + ELN+FQ+ +FRL LSD D+ L+++
Sbjct: 154 CSSVSGMGINQAFYHGRTAALYPRAPLYNAEEGRLCPRFDRAMRRLFRIHDVDRDGLLRNDELNAFQFHAFRLLLSDSDLESLRKI 239
BLAST of mRNA_H-paniculata_contig29560.8039.1 vs. uniprot
Match: A0A7S3V0N8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V0N8_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 2.340e-18 Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 28 QVGISQVFHHALTAALYPIGPLLDAKTNQLRPRFDRAIRRLFRIYDRDGDGLLGDQELNSFQYESFRLNLSDEDIVVLKQV 270
+ +S++FH A + LYP+ PL D KT +LRP+F +A+ R+FRI+D D DGLL D ELN+FQ F + L+ DI +K V
Sbjct: 206 NMNVSEIFHMAQHSVLYPLAPLFDTKTKELRPKFKKALCRVFRIFDMDRDGLLSDSELNNFQERCFGVRLTPTDIEQVKSV 286
BLAST of mRNA_H-paniculata_contig29560.8039.1 vs. uniprot
Match: A0A5J4YMH2_PORPP (Mitochondrial Rho GTPase 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YMH2_PORPP) HSP 1 Score: 82.4 bits (202), Expect = 4.000e-16 Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 37 ISQVFHHALTAALYPIGPLLDAKTNQLRPRFDRAIRRLFRIYDRDGDGLLGDQELNSFQYESFRLNLSDEDIVVLKQV 270
+++VF+ A + L+P PL D T+ LRP+ A+ R+FR+ D+DGDGLL D+ELN FQY+ F + L DE++ +K V
Sbjct: 157 VAEVFYFAQKSVLHPTAPLYDVSTHALRPKTVAALTRVFRLCDKDGDGLLNDKELNDFQYQCFNVMLRDEELAGVKNV 234
BLAST of mRNA_H-paniculata_contig29560.8039.1 vs. uniprot
Match: A0A7S2SMD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SMD2_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 2.210e-15 Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 28 QVGISQVFHHALTAALYPIGPLLDAKTNQLRPRFDRAIRRLFRIYDRDGDGLLGDQELNSFQYESFRLNLSDEDIVVLKQV 270
+ +S+VF A A +YPI PL D +T +L+P+F A+RR+FRI+D+D DG+L D ELN FQ F L DI +K V
Sbjct: 171 NINVSEVFSLAQQAVVYPISPLFDTQTLELQPKFKTALRRVFRIFDQDRDGVLSDIELNDFQETCFGARLQPSDIEDVKAV 251
BLAST of mRNA_H-paniculata_contig29560.8039.1 vs. uniprot
Match: A0A7S2WS27_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WS27_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 2.590e-15 Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 28 QVGISQVFHHALTAALYPIGPLLDAKTNQLRPRFDRAIRRLFRIYDRDGDGLLGDQELNSFQYESFRLNLSDEDIVVLKQV 270
+ +S+VF A A +YPI PL D +T +L+P+F A+RR+FRI+D+D DG+L D ELN FQ F L DI +K V
Sbjct: 171 NINVSEVFSLAQQAVVYPISPLFDTQTLELQPKFKTALRRVFRIFDQDRDGVLSDIELNDFQETCFGARLQPSDIEDVKAV 251
BLAST of mRNA_H-paniculata_contig29560.8039.1 vs. uniprot
Match: R7QM49_CHOCR (Mitochondrial Rho GTPase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM49_CHOCR) HSP 1 Score: 79.3 bits (194), Expect = 4.760e-15 Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 37 ISQVFHHALTAALYPIGPLLDAKTNQLRPRFDRAIRRLFRIYDRDGDGLLGDQELNSFQYESFRLNLSDEDIVVLKQV 270
IS+VF+ A A LYP GP+ D +T L+P A+RR+F+I D+DGDG L D+ELN FQ+ F ++L ++ +K+V
Sbjct: 160 ISEVFYFAQKAVLYPTGPVYDVETQSLKPPASAALRRIFKICDKDGDGGLNDKELNDFQFTCFNVHLKPAELDGVKKV 237
BLAST of mRNA_H-paniculata_contig29560.8039.1 vs. uniprot
Match: A0A7S2EWI8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EWI8_TRICV) HSP 1 Score: 79.0 bits (193), Expect = 6.570e-15 Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 31 VGISQVFHHALTAALYPIGPLLDAKTNQLRPRFDRAIRRLFRIYDRDGDGLLGDQELNSFQYESFRLNLSDEDIVVLKQVGEFNS 285
+ + +VF A A LYPI PL D + Q+ P RA+ R+FR+YDRD DGLL + ELN+FQ +F++ L++ D+ K+V N+
Sbjct: 72 LNVDEVFLKARQAVLYPITPLYDLEEGQIAPNCRRALTRIFRMYDRDNDGLLSNAELNAFQKRAFQVPLAERDLTGWKKVVSKNN 156
BLAST of mRNA_H-paniculata_contig29560.8039.1 vs. uniprot
Match: A0A396HPX0_MEDTR (Mitochondrial Rho GTPase n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396HPX0_MEDTR) HSP 1 Score: 77.4 bits (189), Expect = 2.260e-14 Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 7 FSCICFGQVGISQVFHHALTAALYPIGPLLDAKTNQLRPRFDRAIRRLFRIYDRDGDGLLGDQELNSFQYESFRLNLSDEDIVVLKQV 270
F C + + + +VF+ A AALYP+ PL D K++ L+PR +RA++R+F + D D DG L D ELN+FQ F + +I +K+V
Sbjct: 120 FECSAYRLIQVLEVFYFAQKAALYPMAPLFDQKSHTLKPRCERALKRIFTLCDHDRDGALSDAELNNFQAVCFNAPMQPWEIANVKKV 207
BLAST of mRNA_H-paniculata_contig29560.8039.1 vs. uniprot
Match: G7KF84_MEDTR (Mitochondrial Rho GTPase n=2 Tax=Medicago truncatula TaxID=3880 RepID=G7KF84_MEDTR) HSP 1 Score: 77.4 bits (189), Expect = 2.260e-14 Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 7 FSCICFGQVGISQVFHHALTAALYPIGPLLDAKTNQLRPRFDRAIRRLFRIYDRDGDGLLGDQELNSFQYESFRLNLSDEDIVVLKQV 270
F C + + + +VF+ A AALYP+ PL D K++ L+PR +RA++R+F + D D DG L D ELN+FQ F + +I +K+V
Sbjct: 157 FECSAYRLIQVLEVFYFAQKAALYPMAPLFDQKSHTLKPRCERALKRIFTLCDHDRDGALSDAELNNFQAVCFNAPMQPWEIANVKKV 244 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29560.8039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig29560.8039.1 >prot_H-paniculata_contig29560.8039.1 ID=prot_H-paniculata_contig29560.8039.1|Name=mRNA_H-paniculata_contig29560.8039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp LLFSCICFGQVGISQVFHHALTAALYPIGPLLDAKTNQLRPRFDRAIRRLback to top mRNA from alignment at H-paniculata_contig29560:502..1682+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig29560.8039.1 ID=mRNA_H-paniculata_contig29560.8039.1|Name=mRNA_H-paniculata_contig29560.8039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1181bp|location=Sequence derived from alignment at H-paniculata_contig29560:502..1682+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig29560:502..1682+ >mRNA_H-paniculata_contig29560.8039.1 ID=mRNA_H-paniculata_contig29560.8039.1|Name=mRNA_H-paniculata_contig29560.8039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig29560:502..1682+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |