mRNA_H-paniculata_contig2933.7997.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2933.7997.1 vs. uniprot
Match: D8LCD1_ECTSI (Ribosomal protein L34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCD1_ECTSI) HSP 1 Score: 193 bits (490), Expect = 1.810e-61 Identity = 97/119 (81.51%), Postives = 107/119 (89.92%), Query Frame = 1
Query: 1 MVRGDGRVTYSRRHAYHTKSNKMKVVKTPGGKLVAHFHKKSAKGARCGD--CGITLPGIKHLRPKQYKNLKKREKTVSRSYGGSRCAGCVRQRVVRAFLIEEQKIVKQVLLEKQKKKKS 351
MVRGDGR+TY+RRHAYHTKSNK K VKTPGGKLVAH+ KKSAKG C D C + LPGIKH+RPK+YKNLKKR+KTVSR+YGGS CA CVRQRVVRAFLIEEQKIVK+VLLEKQKKKK+
Sbjct: 19 MVRGDGRITYTRRHAYHTKSNKAKAVKTPGGKLVAHYLKKSAKGVHCADASCSVALPGIKHMRPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA 137
BLAST of mRNA_H-paniculata_contig2933.7997.1 vs. uniprot
Match: A0A6V2RVW8_HETAK (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A6V2RVW8_HETAK) HSP 1 Score: 176 bits (445), Expect = 7.110e-55 Identity = 85/113 (75.22%), Postives = 98/113 (86.73%), Query Frame = 1
Query: 13 DGRVTYSRRHAYHTKSNKMKVVKTPGGKLVAHFHKKSAKGARCGDCGITLPGIKHLRPKQYKNLKKREKTVSRSYGGSRCAGCVRQRVVRAFLIEEQKIVKQVLLEKQKKKKS 351
D RV Y+RRH Y TKSNK+K+ KTPGG+LVAH+HKK A G +C DCG L GIKHLRPKQYKNLKKREKTVSR+YGGS CAGCVRQR+VRAFLIEEQKIVK++++EK KK K+
Sbjct: 4 DIRVQYTRRHCYATKSNKVKITKTPGGRLVAHYHKKKAAGPKCSDCGTVLAGIKHLRPKQYKNLKKREKTVSRAYGGSACAGCVRQRIVRAFLIEEQKIVKKMIMEKMKKAKA 116
BLAST of mRNA_H-paniculata_contig2933.7997.1 vs. uniprot
Match: A0A835ZPJ0_9STRA (Ribosomal protein L34e-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPJ0_9STRA) HSP 1 Score: 169 bits (427), Expect = 3.690e-52 Identity = 86/112 (76.79%), Postives = 96/112 (85.71%), Query Frame = 1
Query: 10 GDGRVTYSRRHAYHTKSNKMKVVKTPGGKLVAHFHKKSAKGARCGDCGITLPGIKHLRPKQYKNLKKREKTVSRSYGGSRCAGCVRQRVVRAFLIEEQKIVKQVLLEKQKKK 345
GD RVTY+RRHAY T SNK+KVV+TPGGK VAH+ KK A G +CGDC I LPGI LRPK+YKNLK+REKTVSR+YGGSRCA CVRQRVVRAFLIEEQKIVK++L EK K K
Sbjct: 3 GDKRVTYTRRHAYATASNKIKVVRTPGGKHVAHYRKKKANGPKCGDCKIALPGIACLRPKEYKNLKRREKTVSRAYGGSRCAACVRQRVVRAFLIEEQKIVKKLLAEKIKGK 114
BLAST of mRNA_H-paniculata_contig2933.7997.1 vs. uniprot
Match: A0A7S2UXI2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXI2_9STRA) HSP 1 Score: 165 bits (418), Expect = 9.240e-51 Identity = 79/112 (70.54%), Postives = 97/112 (86.61%), Query Frame = 1
Query: 13 DGRVTYSRRHAYHTKSNKMKVVKTPGGKLVAHFHKKSAKGARCGDCGITLPGIKHLRPKQYKNLKKREKTVSRSYGGSRCAGCVRQRVVRAFLIEEQKIVKQVLLEKQKKKK 348
D RV Y RRH+Y TKSNK+K+VKTPGG+LVAH+H K AKG +C +CGI+LPGIKH+RP +YKN+KKREKTV+R+YGGS C CV+ R+VRAFLIEEQKIVK+++ EK KKKK
Sbjct: 4 DIRVQYRRRHSYATKSNKIKIVKTPGGRLVAHYHTKKAKGPKCAECGISLPGIKHVRPIKYKNMKKREKTVTRAYGGSECGKCVKDRIVRAFLIEEQKIVKKMVAEKLKKKK 115
BLAST of mRNA_H-paniculata_contig2933.7997.1 vs. uniprot
Match: A0A485KJ51_9STRA (Aste57867_7967 protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KJ51_9STRA) HSP 1 Score: 160 bits (404), Expect = 1.340e-48 Identity = 80/111 (72.07%), Postives = 94/111 (84.68%), Query Frame = 1
Query: 19 RVTYSRRHAYHTKSNKMKVVKTPGGKLVAHFHKKSAKGARCGDCGITLPGIKHLRPKQYKNLKKREKTVSRSYGGSRCAGCVRQRVVRAFLIEEQKIVKQVLLEKQKKKKS 351
R+TY RRH+Y TKSN++ VKTPGGKLVAH+ KK++ G +CGDC +L GIKHL K YKN+ K EKTVSR+YGGSRCAGCVRQR+VRAFLIEEQKIVK+VLLEK KKK+
Sbjct: 6 RITYRRRHSYATKSNRIVPVKTPGGKLVAHYRKKTSHGPKCGDCKQSLKGIKHLATKAYKNIAKSEKTVSRAYGGSRCAGCVRQRIVRAFLIEEQKIVKKVLLEKLSKKKT 116
BLAST of mRNA_H-paniculata_contig2933.7997.1 vs. uniprot
Match: A0A7S2TCS5_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TCS5_PROMC) HSP 1 Score: 159 bits (402), Expect = 2.380e-48 Identity = 76/110 (69.09%), Postives = 93/110 (84.55%), Query Frame = 1
Query: 19 RVTYSRRHAYHTKSNKMKVVKTPGGKLVAHFHKKSAKGARCGDCGITLPGIKHLRPKQYKNLKKREKTVSRSYGGSRCAGCVRQRVVRAFLIEEQKIVKQVLLEKQKKKK 348
R+TY RRH+Y TKSNK++ VKTPGG+L A + KK A G +CGDC + LPGI LRPKQYKNL KREK+VSR+YGG+RCAGCVR+R+VRAFLIEEQK+VK++L +K KK K
Sbjct: 6 RITYKRRHSYATKSNKIRAVKTPGGRLTAQYIKKKAAGPKCGDCAVRLPGIPALRPKQYKNLHKREKSVSRAYGGNRCAGCVRERIVRAFLIEEQKVVKRLLAQKAKKSK 115
BLAST of mRNA_H-paniculata_contig2933.7997.1 vs. uniprot
Match: F0YE62_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE62_AURAN) HSP 1 Score: 159 bits (402), Expect = 2.380e-48 Identity = 78/110 (70.91%), Postives = 91/110 (82.73%), Query Frame = 1
Query: 13 DGRVTYSRRHAYHTKSNKMKVVKTPGGKLVAHFHKKSAKGARCGDCGITLPGIKHLRPKQYKNLKKREKTVSRSYGGSRCAGCVRQRVVRAFLIEEQKIVKQVLLEKQKK 342
D RVT+ RRHAY+TKSN +K VKTPGG+LV H+ K +G +CGDC +LPGIKHL YKN KRE+TVSR+YGGSRCAGCVRQRVVRAFLIEEQKIVKQ+++EK KK
Sbjct: 3 DTRVTFKRRHAYNTKSNVLKAVKTPGGRLVGHYASKKRQGPKCGDCKCSLPGIKHLSSFSYKNTHKRERTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKQMMMEKSKK 112
BLAST of mRNA_H-paniculata_contig2933.7997.1 vs. uniprot
Match: A0A7S3K4R2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4R2_9STRA) HSP 1 Score: 159 bits (402), Expect = 2.450e-48 Identity = 78/107 (72.90%), Postives = 90/107 (84.11%), Query Frame = 1
Query: 13 DGRVTYSRRHAYHTKSNKMKVVKTPGGKLVAHFHKKSAKGARCGDCGITLPGIKHLRPKQYKNLKKREKTVSRSYGGSRCAGCVRQRVVRAFLIEEQKIVKQVLLEK 333
DGRVTYSRRH+Y TKSN +KV+KTPGGKLV H+ K G +CGDC LPGIK L P QYKN+ KRE+TVSR+YGGSRCA CVRQR++RAFLIEEQKIVKQ++LEK
Sbjct: 4 DGRVTYSRRHSYATKSNVLKVIKTPGGKLVGHYANKKRNGPKCGDCKNPLPGIKCLSPFQYKNVHKRERTVSRAYGGSRCAKCVRQRIIRAFLIEEQKIVKQMMLEK 110
BLAST of mRNA_H-paniculata_contig2933.7997.1 vs. uniprot
Match: K3WQZ0_GLOUD (Uncharacterized protein n=4 Tax=Pythiaceae TaxID=4782 RepID=K3WQZ0_GLOUD) HSP 1 Score: 155 bits (393), Expect = 5.580e-47 Identity = 78/109 (71.56%), Postives = 90/109 (82.57%), Query Frame = 1
Query: 19 RVTYSRRHAYHTKSNKMKVVKTPGGKLVAHFHKKSAKGARCGDCGITLPGIKHLRPKQYKNLKKREKTVSRSYGGSRCAGCVRQRVVRAFLIEEQKIVKQVLLEKQKKK 345
RVTY RRH+Y TKSN +K VKTPGG LVA + KK G +CGDC +L GIKHL PK+YKN+ K ++TVSR+YGGSRCA CVRQR+VRAFLIEEQKIVK+VLLEK KKK
Sbjct: 6 RVTYRRRHSYATKSNGIKAVKTPGGVLVAQYRKKRCAGPKCGDCKQSLKGIKHLSPKEYKNVSKTQRTVSRAYGGSRCANCVRQRIVRAFLIEEQKIVKKVLLEKMKKK 114
BLAST of mRNA_H-paniculata_contig2933.7997.1 vs. uniprot
Match: K8YVG6_NANGC (Large subunit ribosomal protein L34e n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVG6_NANGC) HSP 1 Score: 155 bits (392), Expect = 7.450e-47 Identity = 78/111 (70.27%), Postives = 89/111 (80.18%), Query Frame = 1
Query: 13 DGRVTYSRRHAYHTKSNKMKVVKTPGGKLVAHFHKKSAKGARCGDCGITLPGIKHLRPKQYKNLKKREKTVSRSYGGSRCAGCVRQRVVRAFLIEEQKIVKQVLLEKQKKK 345
D RVTY RRHAY T+SN +VKTPGG+L H KK +G CGDC I LPGIKHL+ K+YKNL KRE+TVSR+YGGSRCA CVR R+VRAFLIEEQKIVK+VL EK+ KK
Sbjct: 4 DTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2933.7997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2933.7997.1 >prot_H-paniculata_contig2933.7997.1 ID=prot_H-paniculata_contig2933.7997.1|Name=mRNA_H-paniculata_contig2933.7997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp MVRGDGRVTYSRRHAYHTKSNKMKVVKTPGGKLVAHFHKKSAKGARCGDCback to top mRNA from alignment at H-paniculata_contig2933:1610..2908- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2933.7997.1 ID=mRNA_H-paniculata_contig2933.7997.1|Name=mRNA_H-paniculata_contig2933.7997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1299bp|location=Sequence derived from alignment at H-paniculata_contig2933:1610..2908- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2933:1610..2908- >mRNA_H-paniculata_contig2933.7997.1 ID=mRNA_H-paniculata_contig2933.7997.1|Name=mRNA_H-paniculata_contig2933.7997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig2933:1610..2908- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |