mRNA_H-paniculata_contig28986.7896.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28986.7896.1
Unique NamemRNA_H-paniculata_contig28986.7896.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A438IJY3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IJY3_VITVI)

HSP 1 Score: 85.9 bits (211), Expect = 8.970e-17
Identity = 60/171 (35.09%), Postives = 91/171 (53.22%), Query Frame = 1
Query:    1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG--------EISLK---------------------SGETNLLVAVYVEDLVIAGRREKV-DEFKHKIIPRFRMKDLGFLSRVLGIEVRRD 423
            +P S ++V +SS++EKW  AM++E  ++ +NG W+  +   LP   K I  KWIFK K    G++ RYKA LVA+GF+Q EG         +S K                     SG   +++ +YV+D+++A     +  E K  +  +F MKDLG  S VLGI++ RD
Sbjct:  747 DPISVSQVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVE---LPKGVKLIGCKWIFKIKRDSKGNIVRYKAHLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALENTVDQCIYLKFSGTKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRD 914          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A182GDL1_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDL1_AEDAL)

HSP 1 Score: 83.6 bits (205), Expect = 1.410e-16
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG 246
            EP S  E ++SSE++ W+ AM+EE+ +L+ENGTW   +   LPA RKAI +KW+FK+K    G+V ++KA LVAQGFSQ  G
Sbjct:    8 EPSSYEEAVRSSESDLWKAAMQEEYDSLMENGTWVLAE---LPAGRKAIGSKWVFKKKEDSAGNVCKFKARLVAQGFSQQFG 86          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 78.2 bits (191), Expect = 1.340e-15
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG 246
            +P++  E L S +AEKW+ AMEEE   L  N TW   D    P  RK ++ KW+FKRKL + G V RYKA LVA+G++QVEG
Sbjct:   30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETW---DIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEG 108          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 81.3 bits (199), Expect = 3.270e-15
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   25 LKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG 246
            +K  EAE W+ AM++E  +L ENGTW+  D   LP  RKA+  KWIFKRKL E G+V RYKA LVAQGF+Q  G
Sbjct:    1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFG 71          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A1W7R6D9_AEDAL (Putative polyprotein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6D9_AEDAL)

HSP 1 Score: 80.9 bits (198), Expect = 4.840e-15
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG 246
            EPKS AE L S E++KW+ AM EE  +L+E  TW   D  +LPA RKAI ++W++KRK    G V R+KA LVAQGF Q  G
Sbjct:  643 EPKSYAEALASPESDKWKAAMAEEMASLMEKDTW---DVVQLPADRKAIGSRWVYKRKESANGDVVRFKARLVAQGFRQKFG 721          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A1Y1IGG8_KLENI (Integrase catalytic domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IGG8_KLENI)

HSP 1 Score: 79.7 bits (195), Expect = 1.260e-14
Identity = 51/112 (45.54%), Postives = 61/112 (54.46%), Query Frame = 1
Query:    1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG--------EISLKSGETNLLVAVYVEDLVI 312
            EPKS  E L S EAE WR AM+EE+G+L EN TWE  +P   P+  K I  KW FK K  E G + RYKA LV +GF Q +G         +S       LL    VEDL +
Sbjct:  560 EPKSLGEALNSPEAELWRKAMDEEFGSLQENQTWELAEP---PSGVKPIPCKWAFKLKRDENGQINRYKARLVIKGFRQKKGVDFEEVFAPVSRHVTLRTLLAVAAVEDLEV 668          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: UPI0011563080 (uncharacterized protein LOC115269925 n=1 Tax=Aedes albopictus TaxID=7160 RepID=UPI0011563080)

HSP 1 Score: 74.7 bits (182), Expect = 1.390e-14
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG 246
            EPK+  E +  SE+ KWR AM EE  +  E+GTW+  +   LP  RKAI  KW++KRK  E G VARYKA L AQGFSQ  G
Sbjct:   33 EPKTFDEAV--SESAKWRNAMHEEMASHREHGTWDITE---LPPGRKAIGCKWVYKRKQDETGQVARYKARLAAQGFSQKFG 109          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A1U8MDR4_GOSHI (uncharacterized protein LOC107936685 n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8MDR4_GOSHI)

HSP 1 Score: 79.3 bits (194), Expect = 1.540e-14
Identity = 56/156 (35.90%), Postives = 80/156 (51.28%), Query Frame = 1
Query:    4 PKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQ------------VEGEISLK------SGETNLLVAVYVEDLVIAGRREK-VDEFKHKIIPRFRMKDLGFLSRVLGIEV 414
            P S  E  +SS    W    + E+ AL+ N TW   D   LPA R+A+  KWIFK K    GSVARYK  LV +G+ Q            + G++  +       G   L V VY++D+++ G   + +D+F  ++  +F +KDL  LS  LGIEV
Sbjct:  284 PTSITEAFQSSG---WTATAQTEYNALLSNHTW---DLMPLPAGRRAVECKWIFKIKRNVDGSVARYKGRLVVKGYLQESLRQVDINNAFLNGDLHKEIYMVQPPGSQLLYVLVYIDDIIVTGTDSRAIDQFIKELDVQFSLKDLRKLSYFLGIEV 433          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A1X7S0N6_ZYMTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zymoseptoria tritici ST99CH_3D7 TaxID=1276538 RepID=A0A1X7S0N6_ZYMTR)

HSP 1 Score: 75.9 bits (185), Expect = 3.360e-14
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG 246
            EPKS  +V K+    +W TAM +E+ +L+EN TWE  D   LPA ++A+  KW+FK K  + G+V R+KA  V +GF Q EG
Sbjct:   33 EPKSYKDVEKNQYEAEWVTAMTDEYSSLIENATWEIVDEASLPAHKRALSGKWVFKVKRDDKGNVHRFKARWVVRGFEQEEG 114          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: UPI0010A455F4 (uncharacterized protein LOC114763092 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A455F4)

HSP 1 Score: 75.1 bits (183), Expect = 4.130e-14
Identity = 47/119 (39.50%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   61 MEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEGEISLKSGETNLLVAVYVEDLVIAGRRE-KVDEFKHKIIPRFRMKDLGFLSRVLGIEV 414
            M+EE  AL  NGTW  ++   LP  ++AI +KW++KRK K  G++ R KA LVA+G  +           T   + +YV+D++I    E K+ E K  +   F +KDLG L   LGIEV
Sbjct:    1 MKEEIEALERNGTWTLKE---LPKGKRAIDSKWVYKRKFKPNGTLERNKARLVAKGMQK-----------TFAAILIYVDDIIITRNDEGKIAEIKKHLHKNFSIKDLGPLKYFLGIEV 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438IJY3_VITVI8.970e-1735.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A182GDL1_AEDAL1.410e-1652.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0015A81C6A1.340e-1551.22uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A182GIT5_AEDAL3.270e-1558.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1W7R6D9_AEDAL4.840e-1553.66Putative polyprotein (Fragment) n=1 Tax=Aedes albo... [more]
A0A1Y1IGG8_KLENI1.260e-1445.54Integrase catalytic domain-containing protein n=1 ... [more]
UPI00115630801.390e-1453.66uncharacterized protein LOC115269925 n=1 Tax=Aedes... [more]
A0A1U8MDR4_GOSHI1.540e-1435.90uncharacterized protein LOC107936685 n=1 Tax=Gossy... [more]
A0A1X7S0N6_ZYMTR3.360e-1446.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0010A455F44.130e-1439.50uncharacterized protein LOC114763092 n=1 Tax=Proso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28986contigH-paniculata_contig28986:1625..2363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score83.2
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog161934.XP_010693675.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3G9AM@35493,COG2801@1,KOG0017@2759
COG Functional cat.K
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929882.6561446-CDS-H-paniculata_contig28986:1624..17831622929882.6561446-CDS-H-paniculata_contig28986:1624..1783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28986 1625..1783 -
1691481053.4444597-CDS-H-paniculata_contig28986:1624..17831691481053.4444597-CDS-H-paniculata_contig28986:1624..1783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28986 1625..1783 -
1622929882.6728778-CDS-H-paniculata_contig28986:2099..23631622929882.6728778-CDS-H-paniculata_contig28986:2099..2363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28986 2100..2363 -
1691481053.45434-CDS-H-paniculata_contig28986:2099..23631691481053.45434-CDS-H-paniculata_contig28986:2099..2363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28986 2100..2363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28986.7896.1prot_H-paniculata_contig28986.7896.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28986 1625..2363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28986.7896.1

>prot_H-paniculata_contig28986.7896.1 ID=prot_H-paniculata_contig28986.7896.1|Name=mRNA_H-paniculata_contig28986.7896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIR
TKWIFKRKLKEGGSVARYKAPLVAQGFSQVEGEISLKSGETNLLVAVYVE
DLVIAGRREKVDEFKHKIIPRFRMKDLGFLSRVLGIEVRRD
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mRNA from alignment at H-paniculata_contig28986:1625..2363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28986.7896.1 ID=mRNA_H-paniculata_contig28986.7896.1|Name=mRNA_H-paniculata_contig28986.7896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=739bp|location=Sequence derived from alignment at H-paniculata_contig28986:1625..2363- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCAAAATCCGCGGCAGAAGTATTAAAGAGTTCAGAGGCGGAAAAATG GCGCACGGCAATGGAGGAAGAATGGGGGGCGTTGGTGGAAAATGGGACAT GGGAAAGTGAAGACCCGGGGAGGTTACCGGCACGGCGGAAGGCGATTCGT ACGAAATGGATTTTCAAGCGGAAACTGAAGGAGGGTGGCAGCGTGGCACG CTACAAAGCGCCACTGGTGGCTCAAGGTTTTTCACAGGTGGAGGGTGAAA TTTCTTTGAAATCAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTACTG TTTTTAGCCTGGCCGCCGAACATGATTTCGAATTAGAAGGCATGGACGTA GATGCGGCGTATTTGAACGCCCGGGAAGAAGAAGAGCTGTTTGTTAAGCT ACCCCCCGAGGTTTTCCTTTTCTCCCGAGACATACCGTTTGTGCGCCACC TGGGTAAAAGCCTGCACGGCCTCAAGCAGAGCGGCCGAAACTGGAACAAC ACTATTGACGATTTTCTTGTTGGGATAGGACTCGACCGTTCCACTACCAA CTCATGCTTGTACTTTTCTGCGACGATGAGGGAGAAACAAACCTTCTGGT GGCCGTGTATGTTGAAGACCTTGTCATAGCTGGCCGTCGTGAGAAAGTAG ACGAGTTCAAGCATAAGATAATTCCGCGTTTTAGGATGAAAGACTTGGGC TTTCTCTCGCGCGTGTTGGGAATAGAAGTACGACGTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig28986:1625..2363-

>mRNA_H-paniculata_contig28986.7896.1 ID=mRNA_H-paniculata_contig28986.7896.1|Name=mRNA_H-paniculata_contig28986.7896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig28986:1625..2363- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCAAAATCCGCGGCAGAAGTATTAAAGAGTTCAGAGGCGGAAAAATG
GCGCACGGCAATGGAGGAAGAATGGGGGGCGTTGGTGGAAAATGGGACAT
GGGAAAGTGAAGACCCGGGGAGGTTACCGGCACGGCGGAAGGCGATTCGT
ACGAAATGGATTTTCAAGCGGAAACTGAAGGAGGGTGGCAGCGTGGCACG
CTACAAAGCGCCACTGGTGGCTCAAGGTTTTTCACAGGTGGAGGGTGAAA
TTTCTTTGAAATCAGAGCCAAAATCCGCGGCAGAAGTATTAAAGAGTTCA
GAGGCGGAAAAATGGCGCACGGCAATGGAGGAAGAATGGGGGGCGTTGGT
GGAAAATGGGACATGGGAAAGTGAAGACCCGGGGAGGTTACCGGCACGGC
GGAAGGCGATTCGTACGAAATGGATTTTCAAGCGGAAACTGAAGGAGGGT
GGCAGCGTGGCACGCTACAAAGCGCCACTGGTGGCTCAAGGTTTTTCACA
GGTGGAGGGTGAAATTTCTTTGAAATCAGGAGAAACAAACCTTCTGGTGG
CCGTGTATGTTGAAGACCTTGTCATAGCTGGCCGTCGTGAGAAAGTAGAC
GAGTTCAAGCATAAGATAATTCCGCGTTTTAGGATGAAAGACTTGGGCTT
TCTCTCGCGCGTGTTGGGAATAGAAGTACGACGTGACGGAGAAACAAACC
TTCTGGTGGCCGTGTATGTTGAAGACCTTGTCATAGCTGGCCGTCGTGAG
AAAGTAGACGAGTTCAAGCATAAGATAATTCCGCGTTTTAGGATGAAAGA
CTTGGGCTTTCTCTCGCGCGTGTTGGGAATAGAAGTACGACGTGAC
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