prot_H-paniculata_contig28986.7896.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig28986.7896.1
Unique Nameprot_H-paniculata_contig28986.7896.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length141
Homology
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A6L2JRP5_TANCI (Putative polyprotein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JRP5_TANCI)

HSP 1 Score: 88.6 bits (218), Expect = 1.000e-17
Identity = 59/149 (39.60%), Postives = 88/149 (59.06%), Query Frame = 0
Query:    1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGS-VARYKAPLVAQGFSQVEG----EISLKSGETNLLV--AVYVEDLVIAGR-REKVDEFKHKIIPRFRMKDLGFLSRVLGIEVRRD 141
            EP +  E + S E++KW  AM EE  +L +N TWE      LP RRK +  KW+FK K    GS + R+KA LVA+G+SQ EG    EI      +  L+   +YV+D+++A +  E+V++ K  +   F MKDLG   ++LG+E+ +D
Sbjct:  546 EPDTYREAITSKESDKWIAAMGEEIESLHKNKTWELVQ---LPERRKVVGCKWVFKMKTGLPGSDIIRFKARLVAKGYSQKEGIDYNEIFSPVAPSGSLIYLLLYVDDMLVAAKGMEEVNKLKILLNTEFDMKDLGAARKILGMEIIQD 691          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A5A7U0H6_CUCME (Reverse transcriptase n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7U0H6_CUCME)

HSP 1 Score: 84.0 bits (206), Expect = 5.300e-17
Identity = 57/168 (33.93%), Postives = 83/168 (49.40%), Query Frame = 0
Query:    1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG----------------------------EISLKSGETNLLVAVYVEDLVIAGRREKV-DEFKHKIIPRFRMKDLGFLSRVLGIEVR 139
            EP +  E L++   +KW+ AM+EE  A+ +N TWE       P  +KA+  KW+FK K  E G V RYKA LVA+G+SQ +G                            E  +   E  L+V +YV+DL+  G    + ++ K  +   F M D+G +S  LGIEV+
Sbjct:   25 EPLNFEEALQN---DKWKIAMDEEIKAIKKNDTWELST---FPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFAPVVHEEVYLEQPPGYSVKGQEDKVNGHEDILVVCLYVDDLIFTGNCASIFEDLKKAMTQEFEMTDIGLMSYYLGIEVK 186          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A438IJY3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IJY3_VITVI)

HSP 1 Score: 85.9 bits (211), Expect = 8.970e-17
Identity = 60/171 (35.09%), Postives = 91/171 (53.22%), Query Frame = 0
Query:    1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG--------EISLK---------------------SGETNLLVAVYVEDLVIAGRREKV-DEFKHKIIPRFRMKDLGFLSRVLGIEVRRD 141
            +P S ++V +SS++EKW  AM++E  ++ +NG W+  +   LP   K I  KWIFK K    G++ RYKA LVA+GF+Q EG         +S K                     SG   +++ +YV+D+++A     +  E K  +  +F MKDLG  S VLGI++ RD
Sbjct:  747 DPISVSQVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVE---LPKGVKLIGCKWIFKIKRDSKGNIVRYKAHLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALENTVDQCIYLKFSGTKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRD 914          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A182GDL1_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDL1_AEDAL)

HSP 1 Score: 83.6 bits (205), Expect = 1.410e-16
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 0
Query:    1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG 82
            EP S  E ++SSE++ W+ AM+EE+ +L+ENGTW   +   LPA RKAI +KW+FK+K    G+V ++KA LVAQGFSQ  G
Sbjct:    8 EPSSYEEAVRSSESDLWKAAMQEEYDSLMENGTWVLAE---LPAGRKAIGSKWVFKKKEDSAGNVCKFKARLVAQGFSQQFG 86          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A2N9HTH1_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HTH1_FAGSY)

HSP 1 Score: 84.3 bits (207), Expect = 2.990e-16
Identity = 54/153 (35.29%), Postives = 86/153 (56.21%), Query Frame = 0
Query:    1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEGE----------------ISLKSGETNLLV-AVYVEDLVIAGR-REKVDEFKHKIIPRFRMKDLG-FLSRVL 134
            EP S +E L S + ++W TAM+EE  ++ +N  WE  D   LP  RK I  KW+ K K K  GS+ RYKA LVA+G++Q EG                 + LK  + ++L+ ++YV+D+++AG   + +   K  +   F MKD+G ++ ++L
Sbjct:  419 EPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVD---LPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVMIEEDHCVYLKRSKRSILILSLYVDDILLAGNDMDSIVTTKKWLSSTFEMKDMGTYIKKIL 568          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A438GZE5_VITVI (Putative mitochondrial protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GZE5_VITVI)

HSP 1 Score: 82.4 bits (202), Expect = 3.070e-16
Identity = 52/135 (38.52%), Postives = 77/135 (57.04%), Query Frame = 0
Query:   16 KWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEGE---------ISLKSGETNLLVAVYVEDLVIAGR-REKVDEFKHKIIPRFRMKDLGFLSRVLGIEVRR 140
            +W  AM+EE  AL++N TW   +   LP  +K +  KW+F  K K  G++ RYKA LVA+GF+Q  G            L +G+   L+ VYV+D++I G   E++   + ++  +F MK+LG L   LGIEV R
Sbjct:    5 RWVQAMKEEMEALLKNKTWILVN---LPKGQKTVGCKWVFSIKYKVDGTIERYKARLVAKGFTQTYGVDYQETFSPVAKLNTGKLTALI-VYVDDMIIIGDDSEEIARLQEQLASKFEMKNLGGLKYFLGIEVAR 135          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: Q53MQ5_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53MQ5_ORYSJ)

HSP 1 Score: 84.3 bits (207), Expect = 3.100e-16
Identity = 52/166 (31.33%), Postives = 85/166 (51.20%), Query Frame = 0
Query:    2 PKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEGEISLKS--------------------------GETNLLVAVYVEDLVIAGRR-EKVDEFKHKIIPRFRMKDLGFLSRVLGIEVRR 140
            PKS +E   S +A+ W+ A+  E  +++ NGTWE  +    P   K +  KW+FK+KL+  G++ +YKA LVA+G++Q EGE    +                          G   +++ +YV+D++I G   E ++E K  +   F MKDLG    +L I++ R
Sbjct:  776 PKSISEAYASPDADYWKEAVHSEMDSIIANGTWEVTE---RPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLFQNFDMKDLGVADVILNIKLIR 938          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 78.2 bits (191), Expect = 1.340e-15
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 0
Query:    1 EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG 82
            +P++  E L S +AEKW+ AMEEE   L  N TW   D    P  RK ++ KW+FKRKL + G V RYKA LVA+G++QVEG
Sbjct:   30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETW---DIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEG 108          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A2I0JLE5_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JLE5_PUNGR)

HSP 1 Score: 81.6 bits (200), Expect = 1.430e-15
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 0
Query:   17 WRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEGE--ISLKSGETNLLVAVYVEDLVIAGRR-EKVDEFKHKIIPRFRMKDLGFLSRVLGIEVRRD 141
            WR AMEEE+ AL+ N TW   D    P  R  I  KW+++ K K  G++ RYKA LVA+GFSQ E      L+S    +L+ VYV+D+++ G      D     +   F MKDLG L+  L +E   D
Sbjct:  125 WRAAMEEEFQALINNHTW---DLVPAPPSRNIIGCKWVYRIKQKADGTIDRYKARLVAKGFSQREDSSLFILRSRTYAILILVYVDDIILTGTPGAPFDSLMTALHLEFAMKDLGPLNYFLSMEATFD 249          
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Match: A0A2N9ENK0_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9ENK0_FAGSY)

HSP 1 Score: 81.6 bits (200), Expect = 2.620e-15
Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = 0
Query:   17 WRTAMEEEWGALVENGTWESEDPGRLPARRKAIRTKWIFKRKLKEGGSVARYKAPLVAQGFSQVEG--------------------EISL---KSGETNLLVAVYVEDLVIAGRR-EKVDEFKHKIIPRFRMKDLGFLSRVLGIEV 138
            W+ AM+EE+ AL++ GTW+  D   LP  + AI  KW++K K +  G+V RYKA LVA+GF+Q  G                    + +L   +S  +  L+ +YV+D++I G   + + + KH     F MKDLG LS  LG+EV
Sbjct:  449 WQQAMKEEFDALLKIGTWDLVD---LPLGKSAIGCKWVYKIKTRSDGTVDRYKARLVAKGFTQEYGIDYEETFDLVARLSSVPSSYDSALFFRRSDHSITLLLLYVDDMIITGDDVQGIQDLKHFFGQHFEMKDLGPLSYFLGLEV 591          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28986.7896.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L2JRP5_TANCI1.000e-1739.60Putative polyprotein n=1 Tax=Tanacetum cinerariifo... [more]
A0A5A7U0H6_CUCME5.300e-1733.93Reverse transcriptase n=1 Tax=Cucumis melo var. ma... [more]
A0A438IJY3_VITVI8.970e-1735.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A182GDL1_AEDAL1.410e-1652.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HTH1_FAGSY2.990e-1635.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A438GZE5_VITVI3.070e-1638.52Putative mitochondrial protein n=1 Tax=Vitis vinif... [more]
Q53MQ5_ORYSJ3.100e-1631.33Retrotransposon protein, putative, Ty1-copia subcl... [more]
UPI0015A81C6A1.340e-1551.22uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A2I0JLE5_PUNGR1.430e-1540.63Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]
A0A2N9ENK0_FAGSY2.620e-1536.99Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 42..83
e-value: 6.7E-8
score: 32.5
coord: 88..139
e-value: 2.8E-10
score: 40.3
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 13..82
NoneNo IPR availablePANTHERPTHR11439:SF264coord: 13..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28986contigH-paniculata_contig28986:1625..2363 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28986.7896.1mRNA_H-paniculata_contig28986.7896.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig28986 1625..2363 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig28986.7896.1 ID=prot_H-paniculata_contig28986.7896.1|Name=mRNA_H-paniculata_contig28986.7896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
EPKSAAEVLKSSEAEKWRTAMEEEWGALVENGTWESEDPGRLPARRKAIR
TKWIFKRKLKEGGSVARYKAPLVAQGFSQVEGEISLKSGETNLLVAVYVE
DLVIAGRREKVDEFKHKIIPRFRMKDLGFLSRVLGIEVRRD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like