mRNA_H-paniculata_contig28863.7869.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig28863.7869.1 vs. uniprot
Match: C0SQ79_NEOYE (Polyprotein n=2 Tax=Neopyropia yezoensis TaxID=2788 RepID=C0SQ79_NEOYE) HSP 1 Score: 167 bits (423), Expect = 2.750e-44 Identity = 93/204 (45.59%), Postives = 126/204 (61.76%), Query Frame = 1
Query: 1 GSLMYASTGPTPDIAYAVHQAARRMEDPCREDFRTYKRIFRYLSTVPDLGITFGDKSNCTGLEGLVDADWVEDVEDRKSTTRYIFKLNGGAISWCSREQQLVTWSSTEAQYVAAGEAGKKTVYLRDLRGSIGFG*KGSTTLFEDNTSTINLRKGSGPPCRIKHIGVCWHGIREWILEEILALKYVQTGDQFSDILTKGLSRVKF 612
GSLMY S PD+AYAV + ARRM P D+R K + RYL ++GIT+G ++N LEG VD+D+ D + RKSTT ++ L+GGAISW SR Q+LV S+ A+YVAA EA K +++LR L G +G G TL EDN + I + G R KH+ VC+H IR+ + + + + YV TG+Q +D TK L R F
Sbjct: 1185 GSLMYLSNQTRPDLAYAVGKLARRMSAPTEGDWRLAKGVLRYLQGTRNMGITYGKEAN---LEGWVDSDFAGDTQSRKSTTGFVVTLHGGAISWRSRMQRLVATSTAIAEYVAAAEAVKDSLWLRRLAGDLGEY-AGPVTLKEDNQACIAMANNEGMSPRTKHVDVCYHLIRDCVATQQVVVVYVPTGEQLADGFTKPLPRDAF 1384
BLAST of mRNA_H-paniculata_contig28863.7869.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F) HSP 1 Score: 157 bits (396), Expect = 2.100e-43 Identity = 89/204 (43.63%), Postives = 125/204 (61.27%), Query Frame = 1
Query: 1 GSLMYASTGPTPDIAYAVHQAARRMEDPCREDFRTYKRIFRYLSTVPDLGITFGDKSNCTGLEGLVDADWVEDVEDRKSTTRYIFKLNGGAISWCSREQQLVTWSSTEAQYVAAGEAGKKTVYLRDLRGSIGFG*KGSTTLFEDNTSTINLRKGSGPPCRIKHIGVCWHGIREWILEEILALKYVQTGDQFSDILTKGLSRVKF 612
GSLMY T PDI YAV +R ME P KRI RY+ D G+ F + + +G G D+D+ D++DRKST+ +IF LN GAISW S++QQ+VT SSTEA+YVAA + + ++LR + +G KG TT++ DN STI L + R KHI V +H +R+ +E + L+Y ++G+Q +DILTK L + F
Sbjct: 105 GSLMYL-TYTRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGV-FYKREDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDEKIVLEYCKSGEQVADILTKPLKQPAF 306
BLAST of mRNA_H-paniculata_contig28863.7869.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS) HSP 1 Score: 155 bits (393), Expect = 1.670e-42 Identity = 87/203 (42.86%), Postives = 126/203 (62.07%), Query Frame = 1
Query: 1 GSLMYASTGPTPDIAYAVHQAARRMEDPCREDFRTYKRIFRYLSTVPDLGITF----GDKSNCTGLEGLVDADWVEDVEDRKSTTRYIFKLNGGAISWCSREQQLVTWSSTEAQYVAAGEAGKKTVYLRDLRGSIGFG*KGSTTLFEDNTSTINLRKGSGPPCRIKHIGVCWHGIREWILEEILALKYVQTGDQFSDILTKGL 597
GSL Y T PD+ Y+V+ +R ME+P + KRI RY+ GI + G+K L G VD+D+ DV+DRKST+ Y+F L GGA+SW S++Q +VT S+TEA++VAA + ++LR++ G IG+ + TTLF DN+STI L K R KHI V ++ +R+ + EE++ LK+ T DQ SDI+TK +
Sbjct: 161 GSLRYL-TATRPDLIYSVNLVSRYMENPNEQHLLAAKRILRYVQGTCGFGIRYKQGEGEK-----LVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDIMTKAV 357
BLAST of mRNA_H-paniculata_contig28863.7869.1 vs. uniprot
Match: A0A182G509_AEDAL (Uncharacterized protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G509_AEDAL) HSP 1 Score: 150 bits (380), Expect = 5.500e-42 Identity = 79/204 (38.73%), Postives = 119/204 (58.33%), Query Frame = 1
Query: 1 GSLMYASTGPTPDIAYAVHQAARRMEDPCREDFRTYKRIFRYLSTVPDLGITFGDKSNCTGLEGLVDADWVEDVEDRKSTTRYIFKLNGGAISWCSREQQLVTWSSTEAQYVAAGEAGKKTVYLRDLRGSIGFG*KGSTTLFEDNTSTINLRKGSGPPCRIKHIGVCWHGIREWILEEILALKYVQTGDQFSDILTKGLSRVKF 612
GSLM+ +G PDI +A+ AR E+P +E ++ KR+ RYLS D+G+ F + + L VDADW D+ DRKSTT + K+ G + WCSR+Q +V SS EA+YVA +A K+ ++L + + + T+ EDN+ I++ + R KH V +H +RE + E+IL LK + + Q +D LTK L +V F
Sbjct: 18 GSLMFLMSGTRPDICFALTYLARFQENPTQEHWQCLKRVLRYLSGTIDVGLQFSKRDDEPALSCYVDADWANDLVDRKSTTGFFIKVYGNVVQWCSRKQAIVALSSCEAEYVAVCDAAKEVLWLLKVMNDLNLQVQLPVTMLEDNSGCISVSENPETR-RSKHYDVRYHFLREKVREKILKLKRIPSESQVADTLTKALGKVLF 220
BLAST of mRNA_H-paniculata_contig28863.7869.1 vs. uniprot
Match: A0A151SR20_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SR20_CAJCA) HSP 1 Score: 152 bits (383), Expect = 9.900e-42 Identity = 84/204 (41.18%), Postives = 127/204 (62.25%), Query Frame = 1
Query: 1 GSLMYASTGPTPDIAYAVHQAARRMEDPCREDFRTYKRIFRYLSTVPDLGITFGDKSNCTGLEGLVDADWVEDVEDRKSTTRYIFKLNGGAISWCSREQQLVTWSSTEAQYVAAGEAGKKTVYLRDLRGSIGFG*KGSTTLFEDNTSTINLRKGSGPPCRIKHIGVCWHGIREWILEEILALKYVQTGDQFSDILTKGLSRVKF 612
GSLMY +T PDI YAV +R ME P + KR+FRYL DLG+ F K N + L G D+++ D++DR+ST+ ++F + GAISW S++QQ+VT S+TEA+++AA + + ++LR + + F +G T + DN+STI L + R KHI V +H +R+ ++E+I+ L Y ++ DQ +DILTK L F
Sbjct: 88 GSLMYLTTT-RPDIMYAVCLISRYMERPTELHLKAAKRVFRYLKGTTDLGV-FYKKINGSILTGFTDSNYAGDMDDRRSTSGHVFMIGSGAISWASKKQQVVTLSTTEAEFIAAATSACQAIWLRRILEELHFYQQGPTVIHCDNSSTIKLSRNPILHGRSKHIDVRYHFLRDLVIEKIIDLVYCRSEDQVADILTKPLKLEAF 289
BLAST of mRNA_H-paniculata_contig28863.7869.1 vs. uniprot
Match: A0A2P4XPH2_9STRA (RxLR effector candidate protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPH2_9STRA) HSP 1 Score: 150 bits (378), Expect = 1.010e-41 Identity = 84/205 (40.98%), Postives = 121/205 (59.02%), Query Frame = 1
Query: 1 GSLMYASTGPTPDIAYAVHQAARRMEDPCREDFRTYKRIFRYLSTVPDLGITF--GDKSNCTGLEGLVDADWVEDVEDRKSTTRYIFKLNGGAISWCSREQQLVTWSSTEAQYVAAGEAGKKTVYLRDLRGSIGFG*KGSTTLFEDNTSTINLRKGSGPPCRIKHIGVCWHGIREWILEEILALKYVQTGDQFSDILTKGLSRVK 609
G+LMY +T P+IAYAV + A+ E + + KRI +YL T D+G+ F G K L G DA+W D++ R+STT Y+F LNG AISW S+ Q V SSTEA+Y+A A ++ V+LR L +G+ KG+TT+++DN I L K R KHI + +H +RE + + + L+Y T + +D TK L+R K
Sbjct: 27 GALMYLATSTRPNIAYAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDVGLVFNGGIKGE---LVGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGATTIYQDNQGCIALAKNPAYHTRTKHIDIKFHFLREKVESKTVELEYKPTDEMIADGFTKALARDK 228
BLAST of mRNA_H-paniculata_contig28863.7869.1 vs. uniprot
Match: UPI001C093D0F (LOW QUALITY PROTEIN: secreted RxLR effector protein 161-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C093D0F) HSP 1 Score: 150 bits (378), Expect = 1.230e-41 Identity = 79/204 (38.73%), Postives = 120/204 (58.82%), Query Frame = 1
Query: 1 GSLMYASTGPTPDIAYAVHQAARRMEDPCREDFRTYKRIFRYLSTVPDLGITFGDKSNCTGLEGLVDADWVEDVEDRKSTTRYIFKLNGGAISWCSREQQLVTWSSTEAQYVAAGEAGKKTVYLRDLRGSIGFG*KGSTTLFEDNTSTINLRKGSGPPCRIKHIGVCWHGIREWILEEILALKYVQTGDQFSDILTKGLSRVKF 612
GSL+Y ST PDIA+AV A DP ++ + KRI RYL+ LG+ + + + G DADW D++DRKS + Y+FK++G A+SW S++Q V S+ EA+Y+A A ++ V++R L + G+T ++EDN S I + + R KHI + H IR+ + + LK +T D +D+LTKGL++VKF
Sbjct: 32 GSLLYLSTRTRPDIAFAVSNVASFCSDPTKQHWTAVKRILRYLNGTQPLGLLYSKNTEKECI-GYSDADWAGDLDDRKSVSGYMFKMSGAAVSWKSKKQSXVLLSTAEAEYMALASAAQEAVWMRQLLSDLKNCPAGATVIYEDNQSAICMARNPQFHGRAKHIDIKHHFIRDQVASGAVDLKDCKTDDMIADMLTKGLTQVKF 234
BLAST of mRNA_H-paniculata_contig28863.7869.1 vs. uniprot
Match: UPI001AE8F203 (secreted RxLR effector protein 161-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AE8F203) HSP 1 Score: 149 bits (376), Expect = 3.470e-41 Identity = 85/204 (41.67%), Postives = 121/204 (59.31%), Query Frame = 1
Query: 1 GSLMYASTGPTPDIAYAVHQAARRMEDPCREDFRTYKRIFRYLSTVPDLGITFGDKSNCTGLEGLVDADWVEDVEDRKSTTRYIFKLNGGAISWCSREQQLVTWSSTEAQYVAAGEAGKKTVYLRDLRGSIGFG*KGSTTLFEDNTSTINLRKGSGPPCRIKHIGVCWHGIREWILEEILALKYVQTGDQFSDILTKGLSRVKF 612
GSL+ ST PD+A+AV + AR + P E + K I RYL +LG+ + KSN L G D+DW D +DRKST+ YIF N G ISW S++Q+ V S+ +A+Y+A A ++ +++R+L +I T +FEDN STI+L K R KHI + +H RE + + L Y Q+ D +D+LTKGLS+VKF
Sbjct: 42 GSLINLSTRTRPDLAFAVGELARYCDAPGSEHWVALKIILRYLKNTKNLGLCYR-KSNKGELVGFSDSDWAGDHDDRKSTSGYIFLYNEGPISWKSQKQRSVALSTVKAEYMALSAASQECIWIRNLLCNIERSCDSPTVIFEDNQSTISLTKNPQYHGRAKHIDIRYHFTRELVEANKITLVYCQSEDMVADMLTKGLSKVKF 244
BLAST of mRNA_H-paniculata_contig28863.7869.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH) HSP 1 Score: 157 bits (398), Expect = 6.190e-41 Identity = 87/204 (42.65%), Postives = 125/204 (61.27%), Query Frame = 1
Query: 1 GSLMYASTGPTPDIAYAVHQAARRMEDPCREDFRTYKRIFRYLSTVPDLGITFGDKSNCTGLEGLVDADWVEDVEDRKSTTRYIFKLNGGAISWCSREQQLVTWSSTEAQYVAAGEAGKKTVYLRDLRGSIGFG*KGSTTLFEDNTSTINLRKGSGPPCRIKHIGVCWHGIREWILEEILALKYVQTGDQFSDILTKGLSRVKF 612
GSL Y +T PD+ ++V+ +R ME P + KRI RY+ DLGI + ++ T L G VD+D+ DV+DRKST+ Y+F L GGAI+W S++Q +VT S+TEA++V+A + V+LR++ IG +G T +F DN+STI L K R KHI V +H +RE + E + L Y T DQ +DI+TK + R F
Sbjct: 1119 GSLRYLTTT-RPDLIFSVNLVSRYMESPNEQHLLAVKRILRYVQGTLDLGIQY-ERGGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEGTIRLDYCTTTDQVADIMTKAVKREVF 1320
BLAST of mRNA_H-paniculata_contig28863.7869.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI) HSP 1 Score: 149 bits (376), Expect = 6.490e-41 Identity = 93/215 (43.26%), Postives = 120/215 (55.81%), Query Frame = 1
Query: 1 GSLMYASTGPTPDIAYAVHQAARRMEDPCREDFRTYKRIFRYLSTVPDLGITFGD--KSNCT-GLE--GLVDADWVEDVEDRKSTTRYIFKLNGGAISWCSREQQLVTWSSTEAQYVAAGEAGKKTVYLRDLRGSIG---FG*KGSTT----LFEDNTSTINLRKGSGPPCRIKHIGVCWHGIREWILEEILALKYVQTGDQFSDILTKGLSRVK 609
G+LMYA G PDIA+AV ++ P E + R+FRYL L +T+G K C GL G DADW D DR+ST+ Y+FKL GGAISWCSR+QQ + SSTEA+YVA A K+ ++L L + F S + DN S + L K S R KHI V H IR+ + L ++YV TGDQ +D+LTK L+R K
Sbjct: 59 GALMYAMLGSRPDIAFAVGTLSKHASTPGTEHWNALMRVFRYLRGTSGLRLTYGKDLKPLCEHGLTVVGYSDADWAGDRNDRRSTSAYVFKLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWLSTLLSDLDSPVFHALSSRLQVPLILVDNQSAMALAKNSSFHDRTKHIAVRHHFIRDELERGTLTVEYVPTGDQVADVLTKSLAREK 273 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28863.7869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig28863.7869.1 >prot_H-paniculata_contig28863.7869.1 ID=prot_H-paniculata_contig28863.7869.1|Name=mRNA_H-paniculata_contig28863.7869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp MYASTGPTPDIAYAVHQAARRMEDPCREDFRTYKRIFRYLSTVPDLGITFback to top mRNA from alignment at H-paniculata_contig28863:1615..2226+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig28863.7869.1 ID=mRNA_H-paniculata_contig28863.7869.1|Name=mRNA_H-paniculata_contig28863.7869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at H-paniculata_contig28863:1615..2226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig28863:1615..2226+ >mRNA_H-paniculata_contig28863.7869.1 ID=mRNA_H-paniculata_contig28863.7869.1|Name=mRNA_H-paniculata_contig28863.7869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig28863:1615..2226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |