mRNA_H-paniculata_contig28846.7865.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28846.7865.1
Unique NamemRNA_H-paniculata_contig28846.7865.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 9.660e-51
Identity = 84/159 (52.83%), Postives = 111/159 (69.81%), Query Frame = 1
Query:   13 GVPVLWIPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHG-GCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 486
            G  VLWIP    ALQ RLMVCAHM+EAGHRG  AT+ RL+ YC W  ME +V +FV+QCLHC+ S++G +VPR +GE +HGT  GEV+HFD+L++GAS PL    +    G  Y+ +++DD+S +VWLEP   CTA +    +L WC + G P V+VSD
Sbjct: 1279 GRDVLWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSD 1437          
BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 3.520e-49
Identity = 81/159 (50.94%), Postives = 106/159 (66.67%), Query Frame = 1
Query:   13 GVPVLWIPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHG-GCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 486
            G  VLWIP     +Q RLM+CAHM+EAGHRG+ AT++RL  YC W  M+ +V EFV+QCLHC+ S+SG  VPR  GE +HG   GEVLHFD+LH+G S PL    +    G  YL +++DD+S + W+EP   CTA++    +L WC   G P V+VSD
Sbjct:  401 GRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSD 559          
BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.370e-48
Identity = 81/159 (50.94%), Postives = 106/159 (66.67%), Query Frame = 1
Query:   13 GVPVLWIPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHG-GCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 486
            G  VLWIP     +Q RLM+CAHM+EAGHRG+ AT++RL  YC W  M+ +V EFV+QCLHC+ S+SG  VPR  GE +HG   GEVLHFD+LH+G S PL    +    G  YL +++DD+S + W+EP   CTA++    +L WC   G P V+VSD
Sbjct: 1177 GRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSD 1335          
BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.620e-29
Identity = 54/112 (48.21%), Postives = 73/112 (65.18%), Query Frame = 1
Query:  154 MEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHG-GCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 486
            M+ +V EFV+QCLHC+ S+SG  VPR  GE +HG   GEVLHFD+LH+G S PL    +    G  YL +++DD+S + W+EP   CTA++    +L WC   G P V+VSD
Sbjct:    1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSD 112          
BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A329S5W2_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S5W2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.330e-23
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 1
Query:   25 LWIPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHGGCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 486
            +WIP    +LQ R+ +  H+  AGHRG+  T+  L     W+ + A+   FVR CLHC+    G  VPR +GE +H     E++H+D+L++GAS    K         Y+ ++  D S +VW     + TA      ++ W  VFG    +VSD
Sbjct:  374 VWIPPAAASLQLRICIVGHVSVAGHRGLETTLAALQQRFWWNDLPADATYFVRHCLHCMSVVGGPPVPRPLGEAMHADRPNELIHWDYLYMGASSTNDK---------YILVIKGDASKFVWFFAVPDATADTTYNCLMEWFAVFGVCLTWVSD 518          
BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A2P4WY00_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WY00_9STRA)

HSP 1 Score: 101 bits (251), Expect = 7.960e-22
Identity = 47/146 (32.19%), Postives = 74/146 (50.68%), Query Frame = 1
Query:   25 LWIPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHGGCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFG 462
            +WIP    +LQ R+ +  H   AGHRG+  T+  ++    W  +  +V  FVR+CLHC+    G  +PR +GE +H     E++H+D+L++GAS              Y+ ++ DD S YVW     + TA      ++ W   FG
Sbjct: 1279 IWIPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLYMGASTSDDM---------YILVIKDDASKYVWFFAVPDATADTTYTCLVEWFAAFG 1415          
BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A6A3N928_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N928_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.390e-21
Identity = 50/152 (32.89%), Postives = 77/152 (50.66%), Query Frame = 1
Query:   31 IPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHGGCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 486
            IP    +LQ R+ +  H   AGHRG+  T+  ++    W  +  +V  FVR+CLHC+    G  +PR +GE +H     E++H+D+L +GAS    K         Y+ ++ DD S YVW     + TA  +   ++ W   FG    +VSD
Sbjct:  612 IPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLFMGASTSDDK---------YILVIKDDASKYVWFFVVPDATADTSYTCLMYWFAAFGVSLSWVSD 754          
BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A6A4FJL8_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FJL8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.770e-21
Identity = 50/152 (32.89%), Postives = 76/152 (50.00%), Query Frame = 1
Query:   31 IPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHGGCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 486
            IP    +LQ R+ +  H   AGHRG+  T+  ++    W  +  +V  FVR+CLHC+    G  +PR +GE +H     E++H+D+L +GAS    K         Y+ ++ DD S YVW     + TA      ++ W   FG    +VSD
Sbjct:  334 IPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLFMGASTSDDK---------YILVIKDDASKYVWFFVVPDATADTTYTCLMYWFAAFGVSLSWVSD 476          
BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A0G4J8M9_PLABS (Integrase catalytic domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J8M9_PLABS)

HSP 1 Score: 96.7 bits (239), Expect = 3.010e-20
Identity = 49/146 (33.56%), Postives = 80/146 (54.79%), Query Frame = 1
Query:   49 ALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHGGCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 486
            +L+ R++V  H   AGHR    T   +     W  +  ++    +QCLHC+ +R G +VPR +GE LHG +  +VL  D+L++   +P++  +  +    Y+ +L DD SGYV L P+ E T++VA   + +W   F  P   V+D
Sbjct:  604 SLRLRILVIGHCASAGHRASEVTKQMITERFFWTKINQDIEAMCQQCLHCITTRGGKKVPRPLGEALHGHQPFDVLTMDYLYV---EPVRGADHKY---KYILLLKDDFSGYVRLIPSAEATSRVAAEALNQWIADFATPEYLVTD 743          
BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A6A3MFU3_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MFU3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.400e-18
Identity = 54/154 (35.06%), Postives = 74/154 (48.05%), Query Frame = 1
Query:   25 LWIPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHGGCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 486
            +W+P     L  RL + A     GHRG  A +N      V D ++  V +FV+ CL CL  R G  +PR  GE++      EVLHFDFL +GAS         +G   YL +  D  + Y  L  A    ++V    +L W + FG P  +VSD
Sbjct:  103 IWVPVEATELIQRLCIVADCGSQGHRGQKAMLNHHQRLFVIDHLKETVVKFVKDCLLCLHCRGGRIIPRPWGEVIDCNARNEVLHFDFLSMGAS---------YGDSKYLLVFKDHATHYCELVVADTADSRVTTEALLAWHSRFGIPPQWVSD 247          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE9.660e-5152.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE3.520e-4950.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE1.370e-4850.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS6_9PHAE3.620e-2948.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A329S5W2_9STRA1.330e-2333.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P4WY00_9STRA7.960e-2232.19Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6A3N928_9STRA1.390e-2132.89Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A4FJL8_9STRA1.770e-2132.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A0G4J8M9_PLABS3.010e-2033.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3MFU3_9STRA1.400e-1835.06Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28846contigH-paniculata_contig28846:2619..3104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue7.2e-22
Seed eggNOG ortholog653948.CCA22183
Hectar predicted targeting categoryother localisation
EggNOG OGs2EN9U@1,2SRS7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size486
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.500264-CDS-H-paniculata_contig28846:2618..31041622929878.500264-CDS-H-paniculata_contig28846:2618..3104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28846 2619..3104 +
1691481051.5430996-CDS-H-paniculata_contig28846:2618..31041691481051.5430996-CDS-H-paniculata_contig28846:2618..3104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28846 2619..3104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28846.7865.1prot_H-paniculata_contig28846.7865.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28846 2619..3104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28846.7865.1

>prot_H-paniculata_contig28846.7865.1 ID=prot_H-paniculata_contig28846.7865.1|Name=mRNA_H-paniculata_contig28846.7865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MTFRGVPVLWIPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWD
GMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLG
ASDPLKKHEVIHGGCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWC
TVFGAPGVFVSD
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mRNA from alignment at H-paniculata_contig28846:2619..3104+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28846.7865.1 ID=mRNA_H-paniculata_contig28846.7865.1|Name=mRNA_H-paniculata_contig28846.7865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at H-paniculata_contig28846:2619..3104+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTTTCGGGGGGTACCTGTGCTGTGGATTCCCCGCAACGAGTACGC GCTGCAGGCGCGGCTCATGGTATGCGCCCACATGCAGGAGGCGGGCCACC GGGGCATGTACGCTACGGTCAACCGCCTTGCGGCATACTGCGTGTGGGAC GGGATGGAGGCGAACGTGGCGGAGTTTGTCCGGCAGTGTTTGCACTGTTT GGGTTCCAGGTCAGGGTCGCGGGTGCCCCGCCGGGTAGGCGAGCTGTTGC ACGGCACGGAGGTGGGGGAGGTACTTCACTTCGACTTCCTGCATCTGGGC GCGAGCGACCCGCTCAAGAAGCACGAGGTGATCCACGGAGGCTGCCCGTA CCTTCATATTTTGCTGGATGACGTCAGCGGTTACGTGTGGCTAGAGCCGG CACTGGAATGCACGGCGAAAGTGGCTCCCGCCACCGTGTTGAGATGGTGC ACGGTGTTTGGAGCGCCTGGGGTGTTTGTCAGCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig28846:2619..3104+

>mRNA_H-paniculata_contig28846.7865.1 ID=mRNA_H-paniculata_contig28846.7865.1|Name=mRNA_H-paniculata_contig28846.7865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig28846:2619..3104+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTTTCGGGGGGTACCTGTGCTGTGGATTCCCCGCAACGAGTACGC
GCTGCAGGCGCGGCTCATGGTATGCGCCCACATGCAGGAGGCGGGCCACC
GGGGCATGTACGCTACGGTCAACCGCCTTGCGGCATACTGCGTGTGGGAC
GGGATGGAGGCGAACGTGGCGGAGTTTGTCCGGCAGTGTTTGCACTGTTT
GGGTTCCAGGTCAGGGTCGCGGGTGCCCCGCCGGGTAGGCGAGCTGTTGC
ACGGCACGGAGGTGGGGGAGGTACTTCACTTCGACTTCCTGCATCTGGGC
GCGAGCGACCCGCTCAAGAAGCACGAGGTGATCCACGGAGGCTGCCCGTA
CCTTCATATTTTGCTGGATGACGTCAGCGGTTACGTGTGGCTAGAGCCGG
CACTGGAATGCACGGCGAAAGTGGCTCCCGCCACCGTGTTGAGATGGTGC
ACGGTGTTTGGAGCGCCTGGGGTGTTTGTCAGCGACATGACTTTTCGGGG
GGTACCTGTGCTGTGGATTCCCCGCAACGAGTACGCGCTGCAGGCGCGGC
TCATGGTATGCGCCCACATGCAGGAGGCGGGCCACCGGGGCATGTACGCT
ACGGTCAACCGCCTTGCGGCATACTGCGTGTGGGACGGGATGGAGGCGAA
CGTGGCGGAGTTTGTCCGGCAGTGTTTGCACTGTTTGGGTTCCAGGTCAG
GGTCGCGGGTGCCCCGCCGGGTAGGCGAGCTGTTGCACGGCACGGAGGTG
GGGGAGGTACTTCACTTCGACTTCCTGCATCTGGGCGCGAGCGACCCGCT
CAAGAAGCACGAGGTGATCCACGGAGGCTGCCCGTACCTTCATATTTTGC
TGGATGACGTCAGCGGTTACGTGTGGCTAGAGCCGGCACTGGAATGCACG
GCGAAAGTGGCTCCCGCCACCGTGTTGAGATGGTGCACGGTGTTTGGAGC
GCCTGGGGTGTTTGTCAGCGAC
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