prot_H-paniculata_contig28846.7865.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig28846.7865.1
Unique Name	prot_H-paniculata_contig28846.7865.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	162

Homology

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BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 9.660e-51
Identity = 84/159 (52.83%), Postives = 111/159 (69.81%), Query Frame = 0

Query:    5 GVPVLWIPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHG-GCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 162
            G  VLWIP    ALQ RLMVCAHM+EAGHRG  AT+ RL+ YC W  ME +V +FV+QCLHC+ S++G +VPR +GE +HGT  GEV+HFD+L++GAS PL    +    G  Y+ +++DD+S +VWLEP   CTA +    +L WC + G P V+VSD
Sbjct: 1279 GRDVLWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSD 1437

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BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 3.520e-49
Identity = 81/159 (50.94%), Postives = 106/159 (66.67%), Query Frame = 0

Query:    5 GVPVLWIPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHG-GCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 162
            G  VLWIP     +Q RLM+CAHM+EAGHRG+ AT++RL  YC W  M+ +V EFV+QCLHC+ S+SG  VPR  GE +HG   GEVLHFD+LH+G S PL    +    G  YL +++DD+S + W+EP   CTA++    +L WC   G P V+VSD
Sbjct:  401 GRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSD 559

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BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.370e-48
Identity = 81/159 (50.94%), Postives = 106/159 (66.67%), Query Frame = 0

Query:    5 GVPVLWIPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHG-GCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 162
            G  VLWIP     +Q RLM+CAHM+EAGHRG+ AT++RL  YC W  M+ +V EFV+QCLHC+ S+SG  VPR  GE +HG   GEVLHFD+LH+G S PL    +    G  YL +++DD+S + W+EP   CTA++    +L WC   G P V+VSD
Sbjct: 1177 GRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSD 1335

[Close]

BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.620e-29
Identity = 54/112 (48.21%), Postives = 73/112 (65.18%), Query Frame = 0

Query:   52 MEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHG-GCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 162
            M+ +V EFV+QCLHC+ S+SG  VPR  GE +HG   GEVLHFD+LH+G S PL    +    G  YL +++DD+S + W+EP   CTA++    +L WC   G P V+VSD
Sbjct:    1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSD 112

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BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A329S5W2_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S5W2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.330e-23
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 0

Query:    9 LWIPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHGGCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 162
            +WIP    +LQ R+ +  H+  AGHRG+  T+  L     W+ + A+   FVR CLHC+    G  VPR +GE +H     E++H+D+L++GAS    K         Y+ ++  D S +VW     + TA      ++ W  VFG    +VSD
Sbjct:  374 VWIPPAAASLQLRICIVGHVSVAGHRGLETTLAALQQRFWWNDLPADATYFVRHCLHCMSVVGGPPVPRPLGEAMHADRPNELIHWDYLYMGASSTNDK---------YILVIKGDASKFVWFFAVPDATADTTYNCLMEWFAVFGVCLTWVSD 518

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BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A2P4WY00_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WY00_9STRA)

HSP 1 Score: 101 bits (251), Expect = 7.960e-22
Identity = 47/146 (32.19%), Postives = 74/146 (50.68%), Query Frame = 0

Query:    9 LWIPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHGGCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFG 154
            +WIP    +LQ R+ +  H   AGHRG+  T+  ++    W  +  +V  FVR+CLHC+    G  +PR +GE +H     E++H+D+L++GAS              Y+ ++ DD S YVW     + TA      ++ W   FG
Sbjct: 1279 IWIPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLYMGASTSDDM---------YILVIKDDASKYVWFFAVPDATADTTYTCLVEWFAAFG 1415

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BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A6A3N928_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N928_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.390e-21
Identity = 50/152 (32.89%), Postives = 77/152 (50.66%), Query Frame = 0

Query:   11 IPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHGGCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 162
            IP    +LQ R+ +  H   AGHRG+  T+  ++    W  +  +V  FVR+CLHC+    G  +PR +GE +H     E++H+D+L +GAS    K         Y+ ++ DD S YVW     + TA  +   ++ W   FG    +VSD
Sbjct:  612 IPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLFMGASTSDDK---------YILVIKDDASKYVWFFVVPDATADTSYTCLMYWFAAFGVSLSWVSD 754

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BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A6A4FJL8_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FJL8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.770e-21
Identity = 50/152 (32.89%), Postives = 76/152 (50.00%), Query Frame = 0

Query:   11 IPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHGGCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 162
            IP    +LQ R+ +  H   AGHRG+  T+  ++    W  +  +V  FVR+CLHC+    G  +PR +GE +H     E++H+D+L +GAS    K         Y+ ++ DD S YVW     + TA      ++ W   FG    +VSD
Sbjct:  334 IPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLFMGASTSDDK---------YILVIKDDASKYVWFFVVPDATADTTYTCLMYWFAAFGVSLSWVSD 476

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BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A0G4J8M9_PLABS (Integrase catalytic domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J8M9_PLABS)

HSP 1 Score: 96.7 bits (239), Expect = 3.010e-20
Identity = 49/146 (33.56%), Postives = 80/146 (54.79%), Query Frame = 0

Query:   17 ALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHGGCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 162
            +L+ R++V  H   AGHR    T   +     W  +  ++    +QCLHC+ +R G +VPR +GE LHG +  +VL  D+L++   +P++  +  +    Y+ +L DD SGYV L P+ E T++VA   + +W   F  P   V+D
Sbjct:  604 SLRLRILVIGHCASAGHRASEVTKQMITERFFWTKINQDIEAMCQQCLHCITTRGGKKVPRPLGEALHGHQPFDVLTMDYLYV---EPVRGADHKY---KYILLLKDDFSGYVRLIPSAEATSRVAAEALNQWIADFATPEYLVTD 743

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BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Match: A0A6A3MFU3_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MFU3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.400e-18
Identity = 54/154 (35.06%), Postives = 74/154 (48.05%), Query Frame = 0

Query:    9 LWIPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWDGMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLGASDPLKKHEVIHGGCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWCTVFGAPGVFVSD 162
            +W+P     L  RL + A     GHRG  A +N      V D ++  V +FV+ CL CL  R G  +PR  GE++      EVLHFDFL +GAS         +G   YL +  D  + Y  L  A    ++V    +L W + FG P  +VSD
Sbjct:  103 IWVPVEATELIQRLCIVADCGSQGHRGQKAMLNHHQRLFVIDHLKETVVKFVKDCLLCLHCRGGRIIPRPWGEVIDCNARNEVLHFDFLSMGAS---------YGDSKYLLVFKDHATHYCELVVADTADSRVTTEALLAWHSRFGIPPQWVSD 247

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig28846.7865.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16


Match Name	E-value	Identity	Description
A0A6H5K5A5_9PHAE	9.660e-51	52.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JCX8_9PHAE	3.520e-49	50.94	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L7F6_9PHAE	1.370e-48	50.94	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVS6_9PHAE	3.620e-29	48.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A329S5W2_9STRA	1.330e-23	33.77	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A2P4WY00_9STRA	7.960e-22	32.19	Uncharacterized protein n=1 Tax=Phytophthora palmi...	[more]
A0A6A3N928_9STRA	1.390e-21	32.89	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6A4FJL8_9STRA	1.770e-21	32.89	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A0G4J8M9_PLABS	3.010e-20	33.56	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6A3MFU3_9STRA	1.400e-18	35.06	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 18..67 e-value: 6.3E-11 score: 42.2
None	No IPR available	GENE3D	1.10.340.70		coord: 4..70 e-value: 7.7E-9 score: 37.6
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 82..162

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig28846	contig	H-paniculata_contig28846:2619..3104 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig28846.7865.1	mRNA_H-paniculata_contig28846.7865.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig28846 2619..3104 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig28846.7865.1 ID=prot_H-paniculata_contig28846.7865.1|Name=mRNA_H-paniculata_contig28846.7865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MTFRGVPVLWIPRNEYALQARLMVCAHMQEAGHRGMYATVNRLAAYCVWD
GMEANVAEFVRQCLHCLGSRSGSRVPRRVGELLHGTEVGEVLHFDFLHLG
ASDPLKKHEVIHGGCPYLHILLDDVSGYVWLEPALECTAKVAPATVLRWC
TVFGAPGVFVSD

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR041588	Integrase_H2C2
IPR012337	RNaseH-like_sf