mRNA_H-paniculata_contig2884.7862.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2884.7862.1
Unique NamemRNA_H-paniculata_contig2884.7862.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2884.7862.1 vs. uniprot
Match: A0A6H5JTW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 7.960e-17
Identity = 51/125 (40.80%), Postives = 66/125 (52.80%), Query Frame = 3 
Query:    3 YKGMRAGRTSQNAVNHLRYNADMVMLAH-------NDPGDGAAFTYNKRVLVDDLNGNSS--SPVRAALPLMNNIPVESAKTDTPPRCCLFLVNRCSNMGDTVISLGAESNQIMETALDRARKFE 350
            Y    AGR +  A  HL+++ D VML H       N P DG  FT N++V  DDL GNS+  S       ++ +I       D P +  +FLVNR S  GDTV+  GAE N  +ETA+ R RK E
Sbjct:   14 YSSTGAGRPASAANGHLKFSQDAVMLVHLTSFSSSNSPTDG--FTVNEKVTTDDLYGNSTAASVTSQCSSILTDIQHPGKGVDWPTKALMFLVNRYSRQGDTVLLFGAEHNTGVETAISRGRKVE 136
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BLAST of mRNA_H-paniculata_contig2884.7862.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.700e-16
Identity = 50/110 (45.45%), Postives = 67/110 (60.91%), Query Frame = 3 
Query:   21 GRTSQNAVNHLRYNADMVMLAHNDPGDGAAFTYNKRVLVDDLNGNSSSPVRAALPLMNNIPVESAKTDTPPRCCLFLVNRCSNMGDTVISLGAESNQIMETALDRARKFE 350
            GR    A NHL+ + DMV+L HN+   GA FT NKRV VDD  G  S     ++ LM ++  E A TD   R   FL+NR ++ GDTV SL AE + ++E AL+R+R+ E
Sbjct:  437 GRPPIRAENHLKNHLDMVLLIHNE---GATFTCNKRVTVDDPFGFGSD-ASPSMQLMTDVEYEGAATDIVMRPLHFLINRYTHAGDTVASLSAERHNVVEAALERSRRVE 542
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BLAST of mRNA_H-paniculata_contig2884.7862.1 vs. uniprot
Match: A0A6H5JEK0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 9.410e-15
Identity = 52/125 (41.60%), Postives = 67/125 (53.60%), Query Frame = 3 
Query:    3 YKGMRAGRTSQNAVNHLRYNADMVMLAH-------NDPGDGAAFTYNKRVLVDDLNGNSS--SPVRAALPLMNNIPVESAKTDTPPRCCLFLVNRCSNMGDTVISLGAESNQIMETALDRARKFE 350
            Y   RAGR +  A  HL+++ D VML H       N P DG  FT N++V  DDL GNS+  S       ++ +I       D P +  +FLVNR S  GDTV+  GAE N  +ETA+ R RK E
Sbjct:  516 YSSPRAGRPASAANGHLKFSQDAVMLVHLTSFSSSNSPTDG--FTVNEKVTTDDLYGNSTAASVTSQCSSILTDIQHPGKGVDWP-KALMFLVNRYSRQGDTVLLFGAEHNTRVETAITRGRKVE 637
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2884.7862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JTW8_9PHAE7.960e-1740.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBJ9_9PHAE1.700e-1645.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEK0_9PHAE9.410e-1541.60Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2884contigH-paniculata_contig2884:1155..1858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2884.7862.1prot_H-paniculata_contig2884.7862.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2884 1155..1847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.183162-CDS-H-paniculata_contig2884:1154..12451622929878.183162-CDS-H-paniculata_contig2884:1154..1245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2884 1155..1245 -
1691481051.3788042-CDS-H-paniculata_contig2884:1154..12451691481051.3788042-CDS-H-paniculata_contig2884:1154..1245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2884 1155..1245 -
1622929878.197733-CDS-H-paniculata_contig2884:1599..18471622929878.197733-CDS-H-paniculata_contig2884:1599..1847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2884 1600..1847 -
1691481051.3911557-CDS-H-paniculata_contig2884:1599..18471691481051.3911557-CDS-H-paniculata_contig2884:1599..1847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2884 1600..1847 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.211656-UTR-H-paniculata_contig2884:1847..18581622929878.211656-UTR-H-paniculata_contig2884:1847..1858Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2884 1848..1858 -
1691481051.402539-UTR-H-paniculata_contig2884:1847..18581691481051.402539-UTR-H-paniculata_contig2884:1847..1858Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2884 1848..1858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2884.7862.1

>prot_H-paniculata_contig2884.7862.1 ID=prot_H-paniculata_contig2884.7862.1|Name=mRNA_H-paniculata_contig2884.7862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MRAGRTSQNAVNHLRYNADMVMLAHNDPGDGAAFTYNKRVLVDDLNGNSS
SPVRAALPLMNNIPVESAKTDTPPRCCLFLVNRCSNMGDTVISLGAESNQ
IMETALDRARKFE
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mRNA from alignment at H-paniculata_contig2884:1155..1858-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2884.7862.1 ID=mRNA_H-paniculata_contig2884.7862.1|Name=mRNA_H-paniculata_contig2884.7862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=704bp|location=Sequence derived from alignment at H-paniculata_contig2884:1155..1858- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTATAAGGGTATGAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCAT
CTACGTTACAATGCAGATATGGTGATGTTGGCACACAACGACCCGGGTGA
CGGGGCAGCCTTCACGTACAACAAGCGTGTACTGGTGGACGATCTCAACG
GCAACAGCAGTAGTCCCGTCAGAGCAGCCCTCCCATTGATGAACAACATA
CCTGTGGAAAGTGCCAAGACGGATACACCACCCAGGTGTTGCCTGTTCCT
CGTTAACAGGTGAAAATAGTTGTTACTTCTTGAGCAGGGTTGTGGTTCAT
GTTTGCACATTCCTCATTTGAAGGCTGCATGTTTTTCTCTTCTATGTGGT
TGTTGTTGTTATTAGAACGTTCTGCAACAATCACGACCATAATAGTAAGT
AACTAGAGAACTGATGTTGGGGCGTCATTGTGATCATCGAACAAAGTCTT
GTGTTGACACGCCATACAGACACCACCACGAGGTACCTGCTATATACAGA
CACCACCACGAGTACTGGTTAGGCCTTGGTCATGTACTTGGCAAAAATCC
CTTCTTTTTACCAACTTATCGTCAGTACTACTGATAATTCTTTGTTCATA
TTTGGTATGGCAGATGCTCCAACATGGGAGATACAGTCATATCGCTGGGC
GCTGAGAGTAATCAAATTATGGAGACGGCGCTTGATCGTGCGAGGAAGTT
TGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2884:1155..1858-

>mRNA_H-paniculata_contig2884.7862.1 ID=mRNA_H-paniculata_contig2884.7862.1|Name=mRNA_H-paniculata_contig2884.7862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig2884:1155..1858- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCATCTACGTTACAA
TGCAGATATGGTGATGTTGGCACACAACGACCCGGGTGACGGGGCAGCCT
TCACGTACAACAAGCGTGTACTGGTGGACGATCTCAACGGCAACAGCAGT
AGTCCCGTCAGAGCAGCCCTCCCATTGATGAACAACATACCTGTGGAAAG
TGCCAAGACGGATACACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGAT
GAGGGCCGGGCGCACATCGCAGAATGCTGTCAATCATCTACGTTACAATG
CAGATATGGTGATGTTGGCACACAACGACCCGGGTGACGGGGCAGCCTTC
ACGTACAACAAGCGTGTACTGGTGGACGATCTCAACGGCAACAGCAGTAG
TCCCGTCAGAGCAGCCCTCCCATTGATGAACAACATACCTGTGGAAAGTG
CCAAGACGGATACACCACCCAGGTGTTGCCTGTTCCTCGTTAACAGATGC
TCCAACATGGGAGATACAGTCATATCGCTGGGCGCTGAGAGTAATCAAAT
TATGGAGACGGCGCTTGATCGTGCGAGGAAGTTTGAGATGCTCCAACATG
GGAGATACAGTCATATCGCTGGGCGCTGAGAGTAATCAAATTATGGAGAC
GGCGCTTGATCGTGCGAGGAAGTTTGAG
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