mRNA_H-paniculata_contig28724.7829.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28724.7829.1
Unique NamemRNA_H-paniculata_contig28724.7829.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28724.7829.1 vs. uniprot
Match: D7FKW8_ECTSI (SAS-6_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKW8_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 9.130e-68
Identity = 109/116 (93.97%), Postives = 111/116 (95.69%), Query Frame = 1
Query:    1 VMQEDQKLMVEFRDYPNVLIRMLNNCAKEPHSHLAVFVMQHDVNARLDFIQNMEYKFVELMSLQYARSPEDTVQHQITYRYNAMKSRLALMQARLQEVNNLVKLKNPSLLLQLQSR 348
            VMQE+QKLMVEF+DYPNVLIRMLNNC KEPHSHL VFVMQHDVNARLDFIQNMEYKFVELMSLQY RS ED VQHQITYRYNAMKSRLALMQARLQEVNNLVKLKNPSLLLQLQSR
Sbjct:   95 VMQEEQKLMVEFQDYPNVLIRMLNNCIKEPHSHLVVFVMQHDVNARLDFIQNMEYKFVELMSLQYTRSAEDIVQHQITYRYNAMKSRLALMQARLQEVNNLVKLKNPSLLLQLQSR 210          
BLAST of mRNA_H-paniculata_contig28724.7829.1 vs. uniprot
Match: A0A835YXQ7_9STRA (SAS-6_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXQ7_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.900e-57
Identity = 92/113 (81.42%), Postives = 104/113 (92.04%), Query Frame = 1
Query:    4 MQEDQKLMVEFRDYPNVLIRMLNNCAKEPHSHLAVFVMQHDVNARLDFIQNMEYKFVELMSLQYARSPEDTVQHQITYRYNAMKSRLALMQARLQEVNNLVKLKNPSLLLQLQ 342
            MQE Q+L ++F DYP VLIRMLN C +EPHSHLAV+VMQH+++ARLDFIQNMEYKF+EL+SL + RSPED VQHQITYRYNAMKSRLALMQARLQ+VNNLVKLKNPSLLLQLQ
Sbjct:   92 MQEQQRLTLDFADYPAVLIRMLNQCIREPHSHLAVYVMQHELDARLDFIQNMEYKFIELLSLHFTRSPEDVVQHQITYRYNAMKSRLALMQARLQDVNNLVKLKNPSLLLQLQ 204          
BLAST of mRNA_H-paniculata_contig28724.7829.1 vs. uniprot
Match: A0A7S1XUL9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUL9_9STRA)

HSP 1 Score: 182 bits (462), Expect = 7.160e-56
Identity = 93/114 (81.58%), Postives = 102/114 (89.47%), Query Frame = 1
Query:    1 VMQEDQKLMVEFRDYPNVLIRMLNNCAKEPHSHLAVFVMQHDVNARLDFIQNMEYKFVELMSLQYARSPEDTVQHQITYRYNAMKSRLALMQARLQEVNNLVKLKNPSLLLQLQ 342
            V+QE QKLMVEF DYPNVLIRMLNNC +EPH+HLAVFVMQ D  ARLDFIQNMEYKFVELMS  +ARS E++VQH ITYRYNAMK+RLALMQARL EV N++KLKNPSLLLQLQ
Sbjct:  102 VVQEQQKLMVEFADYPNVLIRMLNNCIREPHNHLAVFVMQQDGTARLDFIQNMEYKFVELMSCHFARSSEESVQHHITYRYNAMKTRLALMQARLTEVQNVIKLKNPSLLLQLQ 215          
BLAST of mRNA_H-paniculata_contig28724.7829.1 vs. uniprot
Match: A0A6V2Z9A0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2Z9A0_HETAK)

HSP 1 Score: 181 bits (458), Expect = 2.810e-55
Identity = 92/114 (80.70%), Postives = 104/114 (91.23%), Query Frame = 1
Query:    1 VMQEDQKLMVEFRDYPNVLIRMLNNCAKEPHSHLAVFVMQHDVNARLDFIQNMEYKFVELMSLQYARSPEDTVQHQITYRYNAMKSRLALMQARLQEVNNLVKLKNPSLLLQLQ 342
            V+QE Q+LMVEF DYPNVLIRMLN C +EPH+HLAVFVMQ DV ARLDFIQNMEYKFVELM+  +ARS E+ VQ+QITYRYNAMKS+LALMQ+R+QEVNNLVK+KNPSLLLQLQ
Sbjct:  117 VVQEQQRLMVEFPDYPNVLIRMLNACIQEPHAHLAVFVMQRDVAARLDFIQNMEYKFVELMTCHFARSTEEVVQYQITYRYNAMKSKLALMQSRMQEVNNLVKMKNPSLLLQLQ 230          
BLAST of mRNA_H-paniculata_contig28724.7829.1 vs. uniprot
Match: A0A7S2UUP1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUP1_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.040e-53
Identity = 91/112 (81.25%), Postives = 99/112 (88.39%), Query Frame = 1
Query:    7 QEDQKLMVEFRDYPNVLIRMLNNCAKEPHSHLAVFVMQHDVNARLDFIQNMEYKFVELMSLQYARSPEDTVQHQITYRYNAMKSRLALMQARLQEVNNLVKLKNPSLLLQLQ 342
            Q+ Q+LMVEF DYPNVLIRMLNNC KEPHS LAVFVMQ DV+ARLDFIQNMEYKFVELM+  +  SPED+VQ  ITYRY +MKSRLALMQ RLQEVNNLVK+KNPSLLLQLQ
Sbjct:  116 QDQQRLMVEFPDYPNVLIRMLNNCIKEPHSCLAVFVMQQDVHARLDFIQNMEYKFVELMTCHFVHSPEDSVQRHITYRYKSMKSRLALMQNRLQEVNNLVKMKNPSLLLQLQ 227          
BLAST of mRNA_H-paniculata_contig28724.7829.1 vs. uniprot
Match: A0A7S2CBS5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CBS5_9STRA)

HSP 1 Score: 169 bits (427), Expect = 7.820e-52
Identity = 88/115 (76.52%), Postives = 99/115 (86.09%), Query Frame = 1
Query:    7 QEDQKLMVEFRDYPNVLIRMLNNCAKEPHSHLAVFVMQHDVN---ARLDFIQNMEYKFVELMSLQYARSPEDTVQHQITYRYNAMKSRLALMQARLQEVNNLVKLKNPSLLLQLQ 342
            QE QKLMVEF +YPNVLIRMLN+C KEPHSHLAVFVMQH+     ARLDFIQNMEYKFVELMS Q+  + ++ VQ  I+YRYNAMKSRL+L+Q RLQEVNNLV+LKNPSLLLQLQ
Sbjct:   16 QEQQKLMVEFPEYPNVLIRMLNSCIKEPHSHLAVFVMQHNAEERAARLDFIQNMEYKFVELMSCQFEHTADEAVQQHISYRYNAMKSRLSLVQTRLQEVNNLVRLKNPSLLLQLQ 130          
BLAST of mRNA_H-paniculata_contig28724.7829.1 vs. uniprot
Match: A0A7S3JM65_9SPIT (Hypothetical protein n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JM65_9SPIT)

HSP 1 Score: 164 bits (414), Expect = 1.300e-48
Identity = 78/116 (67.24%), Postives = 102/116 (87.93%), Query Frame = 1
Query:    1 VMQEDQKLMVEFRDYPNVLIRMLNNCAKEPHSHLAVFVMQHDVNARLDFIQNMEYKFVELMSLQYARSPEDTVQHQITYRYNAMKSRLALMQARLQEVNNLVKLKNPSLLLQLQSR 348
            ++QEDQKLM+EF DY N+LI+MLN+C KEPHS LAVF+MQ D +ARLDFIQNMEYKFVEL+S+ +  S E+ ++ QIT+RYN++KS+LA+MQARLQ++N +VK+KNPSLLLQLQ +
Sbjct:  102 IVQEDQKLMIEFNDYSNILIKMLNSCIKEPHSFLAVFIMQRDGSARLDFIQNMEYKFVELLSMDFNASSEEVIRQQITFRYNSVKSKLAIMQARLQDINAIVKIKNPSLLLQLQKQ 217          
BLAST of mRNA_H-paniculata_contig28724.7829.1 vs. uniprot
Match: A0A7S0XE79_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XE79_9CHLO)

HSP 1 Score: 163 bits (413), Expect = 1.420e-48
Identity = 82/113 (72.57%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    4 MQEDQKLMVEFRDYPNVLIRMLNNCAKEPHSHLAVFVMQHDVNARLDFIQNMEYKFVELMSLQYARSPEDTVQHQITYRYNAMKSRLALMQARLQEVNNLVKLKNPSLLLQLQ 342
            +QE QKLMV+F +YP+V++R LN+C KEPHSHLAVFVM  D +ARLDFIQNMEYKFVEL+SL +  SPED V+ QI YRYN++KSRLALMQARL +VN LVK+KNP+LLLQLQ
Sbjct:  103 LQEGQKLMVDFAEYPSVIVRNLNHCIKEPHSHLAVFVMMRDGSARLDFIQNMEYKFVELLSLNFLSSPEDMVRQQIAYRYNSLKSRLALMQARLADVNALVKIKNPNLLLQLQ 215          
BLAST of mRNA_H-paniculata_contig28724.7829.1 vs. uniprot
Match: A0A067CJZ3_SAPPC (SAS-6_N domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CJZ3_SAPPC)

HSP 1 Score: 164 bits (414), Expect = 4.110e-48
Identity = 78/114 (68.42%), Postives = 100/114 (87.72%), Query Frame = 1
Query:    1 VMQEDQKLMVEFRDYPNVLIRMLNNCAKEPHSHLAVFVMQHDVNARLDFIQNMEYKFVELMSLQYARSPEDTVQHQITYRYNAMKSRLALMQARLQEVNNLVKLKNPSLLLQLQ 342
            ++QE QKLMV+F DY NVL+RMLNNC KEPH+H+AV++MQ D  ARLDFIQNMEYKFVEL+S+ +AR+PE+ V+  IT+RYN +KSR++ +Q+RL EVNN+VK+KNPSLLLQLQ
Sbjct:  136 IVQEQQKLMVDFADYANVLVRMLNNCIKEPHNHIAVYLMQSDGRARLDFIQNMEYKFVELLSVDFARAPEEVVRQHITFRYNTVKSRVSALQSRLHEVNNIVKVKNPSLLLQLQ 249          
BLAST of mRNA_H-paniculata_contig28724.7829.1 vs. uniprot
Match: A0A080Z976_PHYPR (SAS-6_N domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080Z976_PHYPR)

HSP 1 Score: 159 bits (401), Expect = 4.720e-48
Identity = 78/113 (69.03%), Postives = 96/113 (84.96%), Query Frame = 1
Query:    4 MQEDQKLMVEFRDYPNVLIRMLNNCAKEPHSHLAVFVMQHDVNARLDFIQNMEYKFVELMSLQYARSPEDTVQHQITYRYNAMKSRLALMQARLQEVNNLVKLKNPSLLLQLQ 342
            MQE Q+LMV+F DY NVLIRMLNNC KEPH+HLAV++MQ D  ARLDFIQNMEYKF+EL+S+ + R+ EDT++  IT+RY +MKSRL ++Q RL EVN++VK KNPSLLLQLQ
Sbjct:    1 MQEQQELMVDFTDYANVLIRMLNNCIKEPHNHLAVYLMQADGRARLDFIQNMEYKFIELLSVDFMRASEDTIRQHITFRYTSMKSRLQVLQTRLHEVNSIVKTKNPSLLLQLQ 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28724.7829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKW8_ECTSI9.130e-6893.97SAS-6_N domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YXQ7_9STRA1.900e-5781.42SAS-6_N domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S1XUL9_9STRA7.160e-5681.58Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6V2Z9A0_HETAK2.810e-5580.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UUP1_9STRA1.040e-5381.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2CBS5_9STRA7.820e-5276.52Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3JM65_9SPIT1.300e-4867.24Hypothetical protein n=1 Tax=Euplotes harpa TaxID=... [more]
A0A7S0XE79_9CHLO1.420e-4872.57Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A067CJZ3_SAPPC4.110e-4868.42SAS-6_N domain-containing protein n=3 Tax=Saproleg... [more]
A0A080Z976_PHYPR4.720e-4869.03SAS-6_N domain-containing protein n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28724contigH-paniculata_contig28724:1886..2870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.8
Seed ortholog evalue1.7e-52
Seed eggNOG ortholog2880.D7FKW8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Centriolar protein SAS N-terminal
EggNOG OGs299C8@1,2RGE2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size351
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28724.7829.1prot_H-paniculata_contig28724.7829.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28724 1886..2867 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.7269018-CDS-H-paniculata_contig28724:1885..19811622929873.7269018-CDS-H-paniculata_contig28724:1885..1981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28724 1886..1981 -
1691481049.3902185-CDS-H-paniculata_contig28724:1885..19811691481049.3902185-CDS-H-paniculata_contig28724:1885..1981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28724 1886..1981 -
1622929873.7430139-CDS-H-paniculata_contig28724:2304..24061622929873.7430139-CDS-H-paniculata_contig28724:2304..2406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28724 2305..2406 -
1691481049.4071276-CDS-H-paniculata_contig28724:2304..24061691481049.4071276-CDS-H-paniculata_contig28724:2304..2406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28724 2305..2406 -
1622929873.7649002-CDS-H-paniculata_contig28724:2717..28671622929873.7649002-CDS-H-paniculata_contig28724:2717..2867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28724 2718..2867 -
1691481049.4210072-CDS-H-paniculata_contig28724:2717..28671691481049.4210072-CDS-H-paniculata_contig28724:2717..2867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28724 2718..2867 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.7814555-UTR-H-paniculata_contig28724:2867..28701622929873.7814555-UTR-H-paniculata_contig28724:2867..2870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28724 2868..2870 -
1691481049.4334629-UTR-H-paniculata_contig28724:2867..28701691481049.4334629-UTR-H-paniculata_contig28724:2867..2870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28724 2868..2870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28724.7829.1

>prot_H-paniculata_contig28724.7829.1 ID=prot_H-paniculata_contig28724.7829.1|Name=mRNA_H-paniculata_contig28724.7829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MQEDQKLMVEFRDYPNVLIRMLNNCAKEPHSHLAVFVMQHDVNARLDFIQ
NMEYKFVELMSLQYARSPEDTVQHQITYRYNAMKSRLALMQARLQEVNNL
VKLKNPSLLLQLQSR*
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mRNA from alignment at H-paniculata_contig28724:1886..2870-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28724.7829.1 ID=mRNA_H-paniculata_contig28724.7829.1|Name=mRNA_H-paniculata_contig28724.7829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=985bp|location=Sequence derived from alignment at H-paniculata_contig28724:1886..2870- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCATGCAAGAGGATCAAAAACTCATGGTGGAGTTCCGGGACTACCCGAA CGTCCTCATTCGTATGCTGAATAACTGCGCTAAGGAGCCTCACAGCCACT TGGCGGTATTCGTCATGCAGCACGATGTTAACGCCCGCCTGGACTTCATA CAGGTCGGTCTCACCCTAGGACACAAGAGAGCGAGAGCCAATACACCAGC GCTGAAATCGATTTTGCTAGTCCCTCGAGTCAGCCCACGATTAATTATAC ATCACACTTGCATCGCATGGATATCTTCAATTTAATCCATCAGTGCGACA CACGATTTTTGGAGATTGAAACTTGCTCCGTTTCCTACGCTGAGGCGTTC CCTCCAATTCGCTAGCTTGTCTCGAAAAATGTAGTACCTGGAAGTATCAT CTTGACAGAACCTAAAATGAGGAAGTCCGACACGTCGCTTGATATTCCGC ATGACTTGATGCAGAACATGGAGTACAAATTCGTGGAGCTCATGTCGCTT CAGTATGCTCGATCACCGGAGGACACCGTCCAGCACCAGATCACGTACCG ATACAACGCCATGAAGGTGAGGTGTGCAGCGCGCAATGCTTCACTTGTGG CATCATGAGACAGCAAATACTGCAGCAGCAGTATGATGAAGGGAAACACT TTTTCCCACCCCCTTACAGTTTTCAACACTGTCCATTGCGGTATTTTTGT CGATAGGCCACAATAGCTAAGTCTAGGACTATCATCGTCCTTGTGTTGCA CCAACCATTGACAATACTTCGTTCTGCGGCAGGCAAACTATAGGCGCACC GTATCGTCAAGTCAAAGGATTTCTACATGCAACAAACTTTCGTTTTCGTC TTTTACTTGTTTTGTCGGGCCTTGTGTCGTGTATCGCAGTCGAGATTGGC CCTAATGCAAGCCAGACTTCAGGAGGTAAACAATCTGGTTAAGCTCAAGA ATCCTTCTCTACTACTGCAATTGCAATCTCGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig28724:1886..2870-

>mRNA_H-paniculata_contig28724.7829.1 ID=mRNA_H-paniculata_contig28724.7829.1|Name=mRNA_H-paniculata_contig28724.7829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig28724:1886..2870- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGAGGATCAAAAACTCATGGTGGAGTTCCGGGACTACCCGAACGT
CCTCATTCGTATGCTGAATAACTGCGCTAAGGAGCCTCACAGCCACTTGG
CGGTATTCGTCATGCAGCACGATGTTAACGCCCGCCTGGACTTCATACAG
ATGCAAGAGGATCAAAAACTCATGGTGGAGTTCCGGGACTACCCGAACGT
CCTCATTCGTATGCTGAATAACTGCGCTAAGGAGCCTCACAGCCACTTGG
CGGTATTCGTCATGCAGCACGATGTTAACGCCCGCCTGGACTTCATACAG
AACATGGAGTACAAATTCGTGGAGCTCATGTCGCTTCAGTATGCTCGATC
ACCGGAGGACACCGTCCAGCACCAGATCACGTACCGATACAACGCCATGA
AGAACATGGAGTACAAATTCGTGGAGCTCATGTCGCTTCAGTATGCTCGA
TCACCGGAGGACACCGTCCAGCACCAGATCACGTACCGATACAACGCCAT
GAAGTCGAGATTGGCCCTAATGCAAGCCAGACTTCAGGAGGTAAACAATC
TGGTTAAGCTCAAGAATCCTTCTCTACTACTGCAATTGCAATCTCGGTGA
TCGAGATTGGCCCTAATGCAAGCCAGACTTCAGGAGGTAAACAATCTGGT
TAAGCTCAAGAATCCTTCTCTACTACTGCAATTGCAATCTCGGTGA
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