mRNA_H-paniculata_contig11226.782.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11226.782.1
Unique NamemRNA_H-paniculata_contig11226.782.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11226.782.1 vs. uniprot
Match: D8LGP1_ECTSI (MutS protein homolog 1B MutS-like ATPases involved in mismatch repair, family 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP1_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 7.800e-113
Identity = 184/220 (83.64%), Postives = 197/220 (89.55%), Query Frame = 1 
Query:    1 LQEEGRGAYVSEIGGRFVIPVRPTYKRTVGIVHDSSRTGKTLFVEPSQQVVGPTNELVEAKLALKVETQRILGQMTLKIADNEEDILLSLEKAAEVDLALARGRLAEKMKAIIPTVRNEGTISLANARHPVLLLRGKEPVGNNMALDGTMQSLVLTGPNAGGKTVVLKTLGLVALMARAGIPIPASPGARVDLFDPVLADIGDLQSVTGDLSTFSGHLVV 660
            L +EGR AYVSEI GRFVIPV PTYKRTVGIVHDSSRTGKTL+VEP+Q VVGPTNELVE KL LKVETQRIL QMTLKIA++E++IL SL  AAEVDLALARGRL  K    IP V NEGTI L NARHPVLLLRGK PVGN+M+LD +MQ+L+LTGPNAGGKTVVLKTLGLVALMARAGIPIPA+PGARVDLFDPVLADIGDLQSVTGDLSTFSGHLVV
Sbjct:  230 LADEGREAYVSEIAGRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQ-VVGPTNELVEVKLQLKVETQRILSQMTLKIAEHEDEILQSLAAAAEVDLALARGRLGAKTGGTIPKVMNEGTIKLVNARHPVLLLRGKAPVGNSMSLDASMQALILTGPNAGGKTVVLKTLGLVALMARAGIPIPAAPGARVDLFDPVLADIGDLQSVTGDLSTFSGHLVV 448
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BLAST of mRNA_H-paniculata_contig11226.782.1 vs. uniprot
Match: A0A6H5JAB7_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAB7_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 9.670e-98
Identity = 167/220 (75.91%), Postives = 180/220 (81.82%), Query Frame = 1 
Query:    1 LQEEGRGAYVSEIGGRFVIPVRPTYKRTVGIVHDSSRTGKTLFVEPSQQVVGPTNELVEAKLALKVETQRILGQMTLKIADNEEDILLSLEKAAEVDLALARGRLAEKMKAIIPTVRNEGTISLANARHPVLLLRGKEPVGNNMALDGTMQSLVLTGPNAGGKTVVLKTLGLVALMARAGIPIPASPGARVDLFDPVLADIGDLQSVTGDLSTFSGHLVV 660
            L +EGR AYVSEI GRFVIPV PTYKRTVGIVHDSSRTGKTL+VEP+Q VVGPTNELVE                   IA++E++IL SL  AAEVDLALARGRL  K    IP V NEGTI L NARHPVLLLRGK PVGN+M+LD +MQ+L+LTGPNAGGKTVVLKTLGLVALMARAGIPIPA+ GARVDLFDPVLADIGDLQSVTGDLSTFSGHLVV
Sbjct:  347 LADEGREAYVSEIAGRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQ-VVGPTNELVE-------------------IAEHEDEILQSLAAAAEVDLALARGRLGAKTGGTIPKVMNEGTIKLVNARHPVLLLRGKAPVGNDMSLDASMQALILTGPNAGGKTVVLKTLGLVALMARAGIPIPAAQGARVDLFDPVLADIGDLQSVTGDLSTFSGHLVV 546
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BLAST of mRNA_H-paniculata_contig11226.782.1 vs. uniprot
Match: A0A835YZI9_9STRA (Muts protein-like protein 1B muts-like ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI9_9STRA)

HSP 1 Score: 299 bits (766), Expect = 2.260e-92
Identity = 159/234 (67.95%), Postives = 180/234 (76.92%), Query Frame = 1 
Query:    1 LQEEGRGAYVSEIGGRFVIPVRPTYKRT--------------VGIVHDSSRTGKTLFVEPSQQVVGPTNELVEAKLALKVETQRILGQMTLKIADNEEDILLSLEKAAEVDLALARGRLAEKMKAIIPTVRNEGTISLANARHPVLLLRGKEPVGNNMALDGTMQSLVLTGPNAGGKTVVLKTLGLVALMARAGIPIPASPGARVDLFDPVLADIGDLQSVTGDLSTFSGHLVV 660
            L +EGRGAYVSE+ GRFV+PV+PTYKR               VGIVHD SRTGKTLF+EPS  VV PTNELVE KLALK E  RIL +MT+K+  N+  +L SL  AAEVDLA AR RL  ++   IP V +EG I L   RHPVL LRGK+PV N++ LD   Q+LVLTGPNAGGKTVVLKTLGLVALMARAGIP+PA+ GARVD+FDPVLADIGDLQSVTGDLSTFSGHL+V
Sbjct:  226 LADEGRGAYVSEVNGRFVLPVKPTYKRNGTCAAFCEAYDKRNVGIVHDVSRTGKTLFIEPSS-VVEPTNELVELKLALKAEEARILSRMTIKVGQNQRPLLASLSAAAEVDLACARARLGARLGGTIPEVGSEGAIRLRAVRHPVLALRGKDPVPNDLELDAASQALVLTGPNAGGKTVVLKTLGLVALMARAGIPVPAARGARVDVFDPVLADIGDLQSVTGDLSTFSGHLMV 458
[Close]
BLAST of mRNA_H-paniculata_contig11226.782.1 vs. uniprot
Match: A0A4D9D3J8_9STRA (Smr domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3J8_9STRA)

HSP 1 Score: 236 bits (603), Expect = 5.370e-69
Identity = 119/214 (55.61%), Postives = 161/214 (75.23%), Query Frame = 1 
Query:   25 YVSEIGGRFVIPVRPTYKRT-VGIVHDSSRTGKTLFVEPSQQVVGPTNELVEAKLALKVETQRILGQMTLKIADNEEDILLSLEKAAEVDLALARGRLAEKMK-AIIPTVRNEGTISLANARHPVLLLRGKEPVGNNMALDGTMQSLVLTGPNAGGKTVVLKTLGLVALMARAGIPIPASPGARVDLFDPVLADIGDLQSVTGDLSTFSGHLVV 660
            Y+++  GRFV+P++ TYKR  +GIVHD S TG+T++VEP Q V+ PTN++   +L L  E  RI+G+MT  +A +++ IL SL+  A +D+++AR +L + M  A++P V  +G IS  +ARHPVLLLR + P+GN + +D     LVLTGPNAGGKT+VLKTLGL+AL+ R GIP+PA  G RVD F P+LADIGD+QSVTGDLSTFSGHL+V
Sbjct:  293 YIAQRNGRFVLPIKNTYKRAGLGIVHDQSNTGQTVYVEPVQ-VIEPTNDMKRLELELLQEEARIVGEMTRLVAVSKDQILRSLDAGALIDISVARAKLGDLMGGAVVPEVGTDGCISAEDARHPVLLLRNRNPIGNTLHIDPAKPGLVLTGPNAGGKTIVLKTLGLLALLVRLGIPVPARRGVRVDFFSPILADIGDMQSVTGDLSTFSGHLLV 505
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BLAST of mRNA_H-paniculata_contig11226.782.1 vs. uniprot
Match: A0A7S2H3Q5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H3Q5_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.130e-67
Identity = 120/212 (56.60%), Postives = 156/212 (73.58%), Query Frame = 1 
Query:   37 IGGRFVIPVRPTYKRTVGIVHDSSRTGKTLFVEPSQQVVGPTNELVEAKLALKVETQRILGQMTLKIADNEEDILLSLEKAAEVDLALARGRLAEKMKAIIPTVRNEGTISLANARHPVLLLRGKEP----VGNNMALDGTMQSLVLTGPNAGGKTVVLKTLGLVALMARAGIPIPASPGARVDLFDPVLADIGDLQSVTGDLSTFSGHLVV 660
            IG RFV+P++PT KR +GI+HD+SR+ KT++VEP+Q VV PTNEL E K+A++ E QRIL  M+  +  +   +  +L+ AAE DL+ AR  L + +   IP V NEG IS+   RHP+L LR        VGN++ L+  + SLVLTGPNAGGKTVVLK LGL AL+A+AGIP+PA+ GARVD+F  +LADIGD+QSV GDLSTFSGHL+V
Sbjct:   50 IGDRFVVPIKPTNKRGIGIIHDASRSAKTIYVEPAQ-VVEPTNELKEVKVAVRQEEQRILTTMSRLVYKHAGKLDSALDAAAETDLSTARFALGQLLNGTIPVVENEGVISVQACRHPLLQLRKGASKCNVVGNDLELNPEVPSLVLTGPNAGGKTVVLKLLGLCALLAKAGIPLPAADGARVDVFGTILADIGDMQSVGGDLSTFSGHLLV 260
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BLAST of mRNA_H-paniculata_contig11226.782.1 vs. uniprot
Match: A0A7S3L824_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L824_9STRA)

HSP 1 Score: 223 bits (567), Expect = 9.140e-67
Identity = 120/229 (52.40%), Postives = 164/229 (71.62%), Query Frame = 1 
Query:    1 LQEEGRGAYVSEI-GGRFVIPVRPTYKRTVGIVHDSSRTGKTLFVEPSQQVVGPTNELVEAKLALKVETQRILGQMTLKIADNEEDILLSLEKAAEVDLALARGRLAEKMKAIIPTVRNEGTISLANARHPVLLLRG-KEPVGNNMAL--DGTMQSLVLTGPNAGGKTVVLKTLGLVALMARAGIPIPASPGA-----RVDLFDPVLADIGDLQSVTGDLSTFSGHLVV 660
            L  E  GA  SE+ GGR VIPV P     +GIVHD+SR+GKT++VEP++ +VGPTNEL + +  L+ E  R+  Q+T +I  N++ +  S++   ++DL  AR RL + ++  +P V+ EG + L NA+HP+LLLRG    VG+++ L  DG  Q LVLTGPN+GGKT++LK LGLVALMARAGIP+PA+ G      RVD F+P+L+DIGD+QSV GDLSTFSGH++V
Sbjct:  278 LALESGGAVYSEVSGGRLVIPVEPKEASRIGIVHDTSRSGKTVYVEPTE-IVGPTNELRQVEAELRAEEARVWRQLTQQIVVNQDILRRSIQAVGQLDLVTARLRLGQALEGTVPLVQEEGVVDLRNAKHPILLLRGISNVVGSDVQLGADGN-QGLVLTGPNSGGKTIILKLLGLVALMARAGIPVPAASGTDDYKPRVDFFNPILSDIGDIQSVGGDLSTFSGHMLV 504
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BLAST of mRNA_H-paniculata_contig11226.782.1 vs. uniprot
Match: A0A1E7FVZ7_9STRA (p-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVZ7_9STRA)

HSP 1 Score: 218 bits (555), Expect = 2.340e-65
Identity = 120/235 (51.06%), Postives = 166/235 (70.64%), Query Frame = 1 
Query:    1 LQEEGRGAYVSEIG-----GRFVIPVRPTYKRTVGIVHDSSRTGKTLFVEPSQQVVGPTNELVEAKLALKVETQRILGQMTLKIADNEEDILLSLEKAAEVDLALARGRLAEKMKAIIPTVRNEGTISLANARHPVLLLRGKEPV-GNNMAL--DGTMQSLVLTGPNAGGKTVVLKTLGLVALMARAGIPIPASPG-------ARVDLFDPVLADIGDLQSVTGDLSTFSGHLVV 660
            L  E  G  +SE+      GR V+P+ P Y   +GIVHDSSR+GKT++VEPS+ +VGPTN+L   +  L+ E  R+   +T ++ +N+ D+  S++  A++DL +AR  L ++++ +IP V++EG ISL NA+HPVLLLR  E V G++++L  DG  Q LVLTGPN+GGKT++LK LGL+ALM+R+GIPIPA  G        RVD FDPVLADIGD+QSV  DLSTFSGH+ +
Sbjct:   91 LALESGGPLISEVASSNGAGRLVLPINPKYASALGIVHDSSRSGKTVYVEPSE-IVGPTNDLRVVERDLEAEEARVWRLLTEQVWNNQRDLRASVQAVAQLDLCVARYTLGQRLEGVIPDVQDEGIISLRNAKHPVLLLRKMEKVVGSDISLGVDGK-QGLVLTGPNSGGKTLILKLLGLLALMSRSGIPIPAEHGDMDGVYLPRVDFFDPVLADIGDIQSVDSDLSTFSGHMYI 323
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BLAST of mRNA_H-paniculata_contig11226.782.1 vs. uniprot
Match: A0A7S4ENI8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ENI8_9STRA)

HSP 1 Score: 220 bits (561), Expect = 3.080e-64
Identity = 121/236 (51.27%), Postives = 168/236 (71.19%), Query Frame = 1 
Query:    1 LQEEGRGAYVSEI-------GGRFVIPVRPTYKRTVGIVHDSSRTGKTLFVEPSQQVVGPTNELVEAKLALKVETQRILGQMTLKIADNEEDILLSLEKAAEVDLALARGRLAEKMKAIIPTVRNEGTISLANARHPVLLLRGKEPV-GNNMALDGT-MQSLVLTGPNAGGKTVVLKTLGLVALMARAGIPIPASPG-------ARVDLFDPVLADIGDLQSVTGDLSTFSGHLVV 660
            L  E  G  VSE+       GGR V+P+ P Y   +GIVHDSSR+GKT++VEPS+ +VGPTNEL + +  L+ E  R+   +T ++ +N+ D+  S++  A++DL +AR +L ++++ +IP V++EG ISL +A+HP LLLR  E V G++++L     Q LVLTGPNAGGKTV+LK LGL+ALM+R+GIPIPA+ G        RVD F+PVLADIGD+QSV  DLSTFSGH++V
Sbjct:  389 LALESGGPLVSEVASNNGGTGGRLVLPINPKYASQLGIVHDSSRSGKTVYVEPSE-IVGPTNELRQIEHELEAEEARVWRSLTEQVWNNQYDLRKSVQAVAQLDLIVARCKLGQRLRGVIPIVKDEGVISLRDAKHPALLLRKFEKVVGSDISLGANGNQGLVLTGPNAGGKTVILKLLGLLALMSRSGIPIPAAYGDLNGEYQPRVDFFNPVLADIGDIQSVDSDLSTFSGHMLV 623
[Close]
BLAST of mRNA_H-paniculata_contig11226.782.1 vs. uniprot
Match: A0A7S4T874_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T874_9STRA)

HSP 1 Score: 211 bits (538), Expect = 4.220e-64
Identity = 119/243 (48.97%), Postives = 162/243 (66.67%), Query Frame = 1 
Query:    1 LQEEGRGAYVSEI-GGRFVIPVRPTYKRT-VGIVHDSSRTGKTLFVEPSQQVVGPTNELVEAKLALKVETQRILGQMTLKIADNEEDILLSLEKAAEVDLALARGRLAEKMKAIIPTVRNEGTISLANARHPVLLLRGKEP-VGNNMAL-DGTMQSLVLTGPNAGGKTVVLKTLGLVALMARAGIPIPASPGA-------------------RVDLFDPVLADIGDLQSVTGDLSTFSGHLVV 660
            L  E  G   SE+ GGR VIPV+  YK + VGI+HD SR+GKT+FVEP++ +VGPTNE+ + ++ L+ E  ++  Q+T ++  + +DI  S+    ++DL LAR RL + +  +IP V++EG +S+  A+HPVL+LR  E  VGN++ L D   Q LVLTGPN+GGKTV+LK +GL A M R GIP+PA+P                     RVD FDPVLADIGD+QSV GDLSTFSGH++V
Sbjct:   17 LALESGGPIFSEVNGGRIVIPVQDAYKNSGVGIMHDVSRSGKTVFVEPTE-IVGPTNEMKQVEVELRQEEAKVWRQLTEEVIKHRDDIERSVSSIVQIDLVLARMRLGDLLNGVIPVVKDEGVMSVREAKHPVLVLRELEDIVGNDIDLGDNGNQGLVLTGPNSGGKTVILKLMGLFAYMTRDGIPLPAAPACTSITVDEETGGEIMEEVVPRVDYFDPVLADIGDIQSVDGDLSTFSGHMLV 258
[Close]
BLAST of mRNA_H-paniculata_contig11226.782.1 vs. uniprot
Match: A0A6V0BCP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0BCP0_9STRA)

HSP 1 Score: 220 bits (561), Expect = 9.930e-64
Identity = 121/236 (51.27%), Postives = 168/236 (71.19%), Query Frame = 1 
Query:    1 LQEEGRGAYVSEI-------GGRFVIPVRPTYKRTVGIVHDSSRTGKTLFVEPSQQVVGPTNELVEAKLALKVETQRILGQMTLKIADNEEDILLSLEKAAEVDLALARGRLAEKMKAIIPTVRNEGTISLANARHPVLLLRGKEPV-GNNMALDGT-MQSLVLTGPNAGGKTVVLKTLGLVALMARAGIPIPASPG-------ARVDLFDPVLADIGDLQSVTGDLSTFSGHLVV 660
            L  E  G  VSE+       GGR V+P+ P Y   +GIVHDSSR+GKT++VEPS+ +VGPTNEL + +  L+ E  R+   +T ++ +N+ D+  S++  A++DL +AR +L ++++ +IP V++EG ISL +A+HP LLLR  E V G++++L     Q LVLTGPNAGGKTV+LK LGL+ALM+R+GIPIPA+ G        RVD F+PVLADIGD+QSV  DLSTFSGH++V
Sbjct:  473 LALESGGPLVSEVASNNGGTGGRLVLPINPKYASQLGIVHDSSRSGKTVYVEPSE-IVGPTNELRQIEHELEAEEARVWRSLTEQVWNNQYDLRKSVQAVAQLDLIVARCKLGQRLRGVIPIVKDEGVISLRDAKHPALLLRKFEKVVGSDISLGANGNQGLVLTGPNAGGKTVILKLLGLLALMSRSGIPIPAAYGDLNGEYQPRVDFFNPVLADIGDIQSVDSDLSTFSGHMLV 707
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11226.782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGP1_ECTSI7.800e-11383.64MutS protein homolog 1B MutS-like ATPases involved... [more]
A0A6H5JAB7_9PHAE9.670e-9875.91DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A835YZI9_9STRA2.260e-9267.95Muts protein-like protein 1B muts-like ATPase n=1 ... [more]
A0A4D9D3J8_9STRA5.370e-6955.61Smr domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2H3Q5_9STRA1.130e-6756.60Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3L824_9STRA9.140e-6752.40Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A1E7FVZ7_9STRA2.340e-6551.06p-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4ENI8_9STRA3.080e-6451.27Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S4T874_9STRA4.220e-6448.97Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A6V0BCP0_9STRA9.930e-6451.27Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11226contigH-paniculata_contig11226:790..7288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score352.1
Seed ortholog evalue1.9e-94
Seed eggNOG ortholog2880.D8LGP1
KEGG koko:K07456
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391
EggNOG free text desc.DNA mismatch repair protein
EggNOG OGs2QRQR@2759,COG1193@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons5
Model size660
Cds size660
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11226.782.1prot_H-paniculata_contig11226.782.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11226 790..7288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928826.6661122-CDS-H-paniculata_contig11226:789..9681622928826.6661122-CDS-H-paniculata_contig11226:789..968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11226 790..968 -
1691480635.867422-CDS-H-paniculata_contig11226:789..9681691480635.867422-CDS-H-paniculata_contig11226:789..968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11226 790..968 -
1622928826.6771066-CDS-H-paniculata_contig11226:1495..16311622928826.6771066-CDS-H-paniculata_contig11226:1495..1631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11226 1496..1631 -
1691480635.8792422-CDS-H-paniculata_contig11226:1495..16311691480635.8792422-CDS-H-paniculata_contig11226:1495..1631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11226 1496..1631 -
1622928826.6861262-CDS-H-paniculata_contig11226:4773..48841622928826.6861262-CDS-H-paniculata_contig11226:4773..4884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11226 4774..4884 -
1691480635.8925931-CDS-H-paniculata_contig11226:4773..48841691480635.8925931-CDS-H-paniculata_contig11226:4773..4884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11226 4774..4884 -
1622928826.6978092-CDS-H-paniculata_contig11226:5883..59731622928826.6978092-CDS-H-paniculata_contig11226:5883..5973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11226 5884..5973 -
1691480635.902842-CDS-H-paniculata_contig11226:5883..59731691480635.902842-CDS-H-paniculata_contig11226:5883..5973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11226 5884..5973 -
1622928826.7103949-CDS-H-paniculata_contig11226:7144..72881622928826.7103949-CDS-H-paniculata_contig11226:7144..7288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11226 7145..7288 -
1691480635.9112785-CDS-H-paniculata_contig11226:7144..72881691480635.9112785-CDS-H-paniculata_contig11226:7144..7288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11226 7145..7288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11226.782.1

>prot_H-paniculata_contig11226.782.1 ID=prot_H-paniculata_contig11226.782.1|Name=mRNA_H-paniculata_contig11226.782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
LQEEGRGAYVSEIGGRFVIPVRPTYKRTVGIVHDSSRTGKTLFVEPSQQV
VGPTNELVEAKLALKVETQRILGQMTLKIADNEEDILLSLEKAAEVDLAL
ARGRLAEKMKAIIPTVRNEGTISLANARHPVLLLRGKEPVGNNMALDGTM
QSLVLTGPNAGGKTVVLKTLGLVALMARAGIPIPASPGARVDLFDPVLAD
IGDLQSVTGDLSTFSGHLVV
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mRNA from alignment at H-paniculata_contig11226:790..7288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11226.782.1 ID=mRNA_H-paniculata_contig11226.782.1|Name=mRNA_H-paniculata_contig11226.782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6499bp|location=Sequence derived from alignment at H-paniculata_contig11226:790..7288- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCAGGAAGAGGGACGCGGGGCATACGTATCGGAGATCGGGGGTCGTTT
CGTTATCCCGGTCAGGCCGACGTACAAGAGGACGGTGGGGATAGTCCACG
ACAGCTCTAGAACGGGGAAGACGCTCTTCGTCGAGCCGTCACAGGTCTGT
GAGACTTGGAGTTTGTTGACCCTGCTGTCACTACACCGTAGTGTCCTATA
GTGTAGATTATACTATTTATTAACCACGGACCTACGCTCGAACGGGTAGG
GTAGCTCGTGAACTGAGCATGACTGGTAGTCTAGCCAGAGGTCTTTTAGT
GGATGCAACCCCTACACTGCCTACTTAGTTCGGCCGAACCGGGGTGGCGC
CTACCCCACAGAGGAACAAATAATTCTGTTCTGTAAAAGGAAATGTAGAT
ATATTTCGGTAAAATACTCAAGTATGGAAGCATCGGATAAAGGTTTTTGC
CTTAGCCTTCCGGGGGTTAAAACCCCCCGCAAAAAACTATTCATTAACGT
CTTGATTGTATGGTAGCGTTTACCTAGCGTGTTCACTCTTTCCCAGAAAG
TGACCCTCGAAGGTAGCAATAACCCCTTGTCTTTTGTTACTTCTGTGCCG
TACGTAGCGTCGGTTGAGTTTGTAGAGGCAAGTAGCCACCACCGTTTGTT
TTTTTTCAGTTGTAATCCTCCATGTTCTTGGGGTCGATGCTCAAATTTTC
ACGGAAATTGGCGAAATCCACTGGGAGCGCCCGCGGCGCAAAAAATAACA
TGTATTATTTCGTCGGAACTGAACGCCATTATTGAAGCTAGGTATGGTGG
GGAAGAATGTTAAAGTAGCTAGTACCATGATCGAATTTGGGTTAAAAGTA
CCGGTTTGGCACCCAGAGCACCCTGTGTGGTTTTTTTTTTAGGGTTTCGA
AAAAATATGCGTTAGACAAGATGCAGGTTGGACCATGGAAAATACGGGAC
AAGATGACCCTTTGGCAGACGGGCAATGCAATATTCTGCATGATGCCATA
TAATACAGTATTGGAAATTGTAGTTTGTTGCCTTGGCTTTCTCGTGGAGC
TCTTGTGGATCTTGTTGCTTGTATCTGCGTTTCTGCAGGTATGATTGTTC
GTTTGTGATTCTGATTATTTTTCGAGTAGCTTTTTCGAGGTCTGGTCTTC
ATTTGTCTTTTGTTTTTGTTTTTGTTTTTGTCTCTCTCTCTTCCCATCTA
GCTGCTGCTTCTTATCTATCCGGTTCTCCCTATCTCGTTCGCTCTTGTGT
GCGATTGAGGATCGTCCTGGATGCTCTTTAACTTACCTACTTATGGTCGT
TGCCCTTTGGCTGAGCAGGTGGTCGGGCCCACCAACGAACTCGTGGAAGC
TAAGCTAGCGCTCAAGGTGGAGACCCAGCGAATTCTTGGACAAATGACAC
TTAAGGTACGCGTATATATATATATATATATATATATTGCATGTAAACCG
GCGGCATTCACTGCATGTAAACAGAAAACTGTCTTGGGGGAAACATCGTA
CCAATGGGACCCATACATCATGATTGATTTCGTTGGTATGGTACATACTA
CACAAGAAGGCTACGGTGAAAAGTATTCGCCTAAAGGGTTCATACCCAGT
AAGGTCTCCATATATTAATCAAGTCGTCCATACTGTTCCAAAGCTTCATA
TGAGGACAAAAATGCCTCCTGGAGCACGACGTACGTGAGCCAGTGAAGTA
TTGATACACAGTAACACGCTGGAGCATTACCAGAAATCATTTATTTTCAA
TGCACATACCTATAATACAACCAGTATAATAAGGTCGACAAAGACTGATC
AAGTAGTTGATACTGTTCCGAAGCTTTCGTATGAGAACGATAACGCCTAG
ACCACGGTAAATAATACTGTACTATGTTGCACTTTCTCTTTTGCCGGCGG
GTCATAATCCATCACCACATGGACTTTGCCCACTGTTCGCCTCATCACTC
CGATCTTCATCACTCCGATCCTCATCCACTCTTCATGATTACCCGTGCTG
CACCTTGGACCGAACAATCCATGCGTTGACCGATGGGTTGCCGTGGGATA
TTGGGTATACCACAAACAGTACTCATGGGTGCCTACAGTTGCCTGTGGGC
ACGAGTAGCCCATGGATTGGCCATGGGTTCATGTGCGTTGACCTGTTGAG
ACCCATGGGCGTTCATGAATGACTCATCGGTATCGATGGGTGCTCATGAA
TCACGTCAAATGATGTCAACCCCTGGAATAAATAGACCCTGCGGAAATTC
CTCTGTCCTCCATAATGTCCAAAACACCTCAAGGTGCGTATACCATTGAT
TGTTCACTGCCCTGTTTTTTTTTTAAATATCTTTTCTCCCGAAAAATGTC
CAGACTCATTTTTTTTCTTCTCATCTTTTTCCTTTTTGTTTTTGATTTCC
ATAGATCGCAGACAACGAGGAGGACATCTTGCTTTCCCTGGAAAAAGCTG
CTGAGGTCGACCTGGCTCTTGCACGGGGTCGTCTTGCCGAGAAGATGAAG
GCCATCATACCCACGGTGTGTATGTACAACCACGTCTTCTATACCGGTCG
ACTTACCTACTTACCTACTTACCTGCCCACCTTCCTATCTACCCTCTCGG
AGCCTTTTTTTTCTTCCCTAAAATAAATTCATCGCGAGGGGTGCCTGAGT
TTTTCGAAATTGGAATCCATCTTCCTATGCTTGTATTTTCATTTTTTTTT
ACTCCTCTTTTTTTTTCGAAATTATTTCATAAATGTTATCCCCGTCGAAG
CTTAGGTTCAACAATTTTTTTGCCGAAGTAAAAAAGTGTACTTGGTCGAA
CGGGAGGGGGGGGGGGTGTAGGGAGTGTAGGTGGTGACATGTGCTCCACA
GACGTGCTCGATGCTTTTTGAGAAATGAGAAGCCCTCGAAATTTCGCTTG
CGTTGCTTGCCCCCTATTTGCGATGATAATGCCCTCTTAGCTCACAGTTA
TTAGAGGACGGATAGTACTCGGGTAGAAATCGATGGAGACATCGGGATGG
AACTTGCACAGAAAAGCCGCGGCGATGCAGTCCCTCAAAAGTATTTTTAA
TGGATATTTTTTTGTCCCTTGGTGTTCTCGGGTTCGAATAATAAATGAAA
ATATATATATATATATATATATTATAAGTTTCCAGAATGTTTGCGAGATC
AAGATTTTTTTTCTAATTTTTACCTTGCTGCAGCTCCAGTTGGTAGTCAC
GGGTTGGTTCATTTGGATCTCGTATGTGCGTTGTGGGCTGTGGACAAGCC
TAGCAGTTTACCAGCCTCACACCATCTGCGTGACGTCTAGCCACGAACCG
ATCTTTGATTTCAAAATCACCGTCTGAAAGCAACACGACGAAGTTAGCTT
GCAACGCTACTCGAGGTCGTTTACTTTAGCAACGGTTTTTTCACGTTTCA
TTTAACCCTTCACGAGCCGGACCTCCTGAGGACCAAAAGCGAAATATCCT
AACGACCACTGCTGAATAATGATGAATACACACACACACAAACACACATA
TATATGTACCAACCTTCATCAGTTATGAATCATGACCGTACAGCAAAGTT
GCTAACCAGCGCTAGTAGCTGGTTATGGAGTTTTCAGTTGCAAAAGGAGG
TTCATTTTTTATGGATGGGGGTGCAATTATATTGAATTTAGTATGGAAAA
GCCCAAAATAAGAAACGAGAAATGCCCGTACAGTGCACCAGGGACTGCTT
TTCGAGAGCACTACTTTGTTTGCCACCGTTCACTTACATCATCAACTGAT
TAGTCGCGAAGCCGCGAGCGAACTGTGCACCGAGTGGAAAATTCTGATGC
ACATTACAACCGTCACGAGACCAAGAGGTTATGCTCTGGGCAGCACCAGC
GGTGATCCCCTAATCAATGCACTGCAACGCTTGCGAGGTCGCTGGAATGT
CGGCCATCTGACAGCCGGCACCAGTTTTTCTCTTGTTGCAAGAAACGAAC
ATATACCCAGCTGCCTTTTCCCGGCGAACTCGGCGACAGTCGGGCGTGCT
TGAGGCAGCGCTTCCACCTCTATTCCCCAGTACATCGTGCTGGCTAAGAT
CAACGGCGAATGACACACAGGACATACGCATAACTGAACTTTGGCATGTC
TGTAAGATGCACTCTATGGTATTACCAATGCACAATATCTGAAGTACACT
GCAGACAGTACTGTTTGTATTGCCCGAGAATATTTGCACTGTCAGTTGTC
TGTTACGAGGACACAGCCATGCCGAACGATGGGCAATTGCATTTCTCTCG
TTTGTGCTGGAGATGGTGTTTCGTTGGGGAATGGCGTTTGTTCCATGCAT
GCATACTGACACTCTCGGGACTTGTTTTGCATGTATATTTCTGCCTGTAT
TGTGGAGGCGAATTCGAGAGAGGTTTGGCGGATGAAGAGATGCCGTTGAC
TTTGTATGAGTGTACTGCTGTACCGTGACGGACACACGCTTTTCACCTCT
TATAATGTTGGAAACACACAACTTTTCGTCAGCGATAGACACAGACTGCC
CCAGGTATGAATGGCTCTTTACCCCTTGAACACTATTATACGAAGATCAC
GGGCACGAGGGATAGTAGGTTGTGTCTGCTGGCAGACTGGCTGTTTGTCC
TTAGTCGTTTTTTGTCGCATACTGCTATTGGGTATGTTGCTTCGTAAGAA
AAATAGTAACAAAATACAAGTCTTCCCTATGAGATGTGGTAAAACGAGGG
GGTCGCCAAGTCGGCGAGGAGGGTCTGTGCCGAAGCATTATCACGGAAAC
AAAGCCGCAGTTCATGAGACCGACAGTCCCCACCCATGTTCTTATGTCAT
AGGTAGATTCTATTATATGTCTACATAAAGTTGATGCCATTTTACAAAAT
CTGAAAGGGTCCGGAAATGTCAACATGGGAATCACACTCATTACAGGACG
GTACGGATGTTACAAGTGGTGCCGTGTGCAGTCAATACAGCACATACATG
GCATAGAATATTATGCCATCTGTGTATATGGGCGAGCGCTGGAGTAGTTG
ACTGTGTCGAAACTTATTTGTCTGCATGTTGTAGTCTATGCCAGAGTATC
TCACACAAGTCCTCACTTCATGTGCTACTGGAACTAACTGTGAAAATACT
TCACATGTTCTGTGTAATGTACATAATGTGTCACATTTTTAGGATCGTTT
GATGTCATTCAAAAATTATGAAAGGGTCCAGAAACGTTAAGCACAATACT
GTACTACTGTAGTACTGTAGTACAGGACAAGGCAAGGTAATGTATACAAA
TCAATCAGTATACAACACAGTGGTCTACATGGCACATGTGCAGAGCTAAT
ATATTGGTTTTGTGTTTGAAAAATATAATCCGAATTTCCGTGGGTCTCCT
GTAGCGGCCCGTCGCTCTTCCGTTAGTCGCTGGTCAGCCATTAACTAAGT
CATTGTCAGAGGCACGCGTCAGCGTACACACCAACCACCGGCGCTGCTCG
CACTCGCTCACTGCTGCAAGACACAAGACACGCCTCCGCTCGCGAATCCG
GGGCGCGGGGCCATTTAAAACGAATTTGTAAGTGTTTCTATTTAATAAGT
ACTTCACAGCTGATGAGCTCCTCAGAAGTTCCTGAAGGGATATTCTGTCT
TACACACATCTAGATGTATATATAGATGATTCTCGTGTATTGTTTTTCGT
CAAATAGGTGCGCAATGAAGGGACCATTAGCCTGGCAAACGCCCGTCACC
CTGTCTTGCTATTGCGAGGAAAGGAACCCGTGGGTAATAACATGGCCTTG
GATGGGACCATGCAGTCGCTTGTGCTGACCGGGCCGAACGCCGGTGAGAA
ATGGTCCACGAGGATTCGTGTGTCGTGCATGACGGAGTGTGGATGACCCC
TTATTGATTTTTCTCCCCGACATCTAGGGTTTGGTTCGCGTCGCTGAAAT
TAAGGTACCGTGGATGTGGGCCTGCGCCAAGAGTCGTCTAACCCCTTGAA
GTGGGCTGCCTAACGACGGATTTTACGGTAACTACTATCGGTGTAGGATT
CCGTACGTACATGACTGAGAAGTCTGGGGCATGAGGAATGAATCTGGCGT
GTTTCGTTAGTCTTGCACCCGATCTTCGCCCTCCCTTTCCATTTCCCTCT
GTTTGTTTTCTGTCTCTGTCTCCCTCCGTCTGTCTGTCTCTCTCCCTCTA
TCTGTCTCTCTCCCTCTATCTGTCTCTATCTCTGTCTCTATCTCTGTCTC
TATCGCTCTGTCACCGTCTCCAACTCTATGTCACACGTCCGTTTGTCTCT
ACTCTGTCTGCCTGTCTCTCTCCCCCCCCCCGTCTCCCCACGTCTTCTCC
CTCTGGCAATGGGGCTAAAGGCGGCAAAACCGTGGTCCTAAAGACGCTGG
GTCTAGTCGCCCTAATGGCTAGGGCGGGGATTCCCATTCCCGCATCTCCT
GGTGCAAGGGTGGATCTTTTCGACCCTGTGCTCGCTGACATCGGAGATTT
GCAGAGCGTCACGGGGGATCTTTCTACTTTCAGCGGGCACCTGGTGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig11226:790..7288-

>mRNA_H-paniculata_contig11226.782.1 ID=mRNA_H-paniculata_contig11226.782.1|Name=mRNA_H-paniculata_contig11226.782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig11226:790..7288- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCAGGAAGAGGGACGCGGGGCATACGTATCGGAGATCGGGGGTCGTTT
CGTTATCCCGGTCAGGCCGACGTACAAGAGGACGGTGGGGATAGTCCACG
ACAGCTCTAGAACGGGGAAGACGCTCTTCGTCGAGCCGTCACAGCTCCAG
GAAGAGGGACGCGGGGCATACGTATCGGAGATCGGGGGTCGTTTCGTTAT
CCCGGTCAGGCCGACGTACAAGAGGACGGTGGGGATAGTCCACGACAGCT
CTAGAACGGGGAAGACGCTCTTCGTCGAGCCGTCACAGCAGGTGGTCGGG
CCCACCAACGAACTCGTGGAAGCTAAGCTAGCGCTCAAGGTGGAGACCCA
GCGAATTCTTGGACAAATGACACTTAAGCAGGTGGTCGGGCCCACCAACG
AACTCGTGGAAGCTAAGCTAGCGCTCAAGGTGGAGACCCAGCGAATTCTT
GGACAAATGACACTTAAGATCGCAGACAACGAGGAGGACATCTTGCTTTC
CCTGGAAAAAGCTGCTGAGGTCGACCTGGCTCTTGCACGGGGTCGTCTTG
CCGAGAAGATGAAGGCCATCATACCCACGATCGCAGACAACGAGGAGGAC
ATCTTGCTTTCCCTGGAAAAAGCTGCTGAGGTCGACCTGGCTCTTGCACG
GGGTCGTCTTGCCGAGAAGATGAAGGCCATCATACCCACGGTGCGCAATG
AAGGGACCATTAGCCTGGCAAACGCCCGTCACCCTGTCTTGCTATTGCGA
GGAAAGGAACCCGTGGGTAATAACATGGCCTTGGATGGGACCATGCAGTC
GCTTGTGCTGACCGGGCCGAACGCCGGTGCGCAATGAAGGGACCATTAGC
CTGGCAAACGCCCGTCACCCTGTCTTGCTATTGCGAGGAAAGGAACCCGT
GGGTAATAACATGGCCTTGGATGGGACCATGCAGTCGCTTGTGCTGACCG
GGCCGAACGCCGGCGGCAAAACCGTGGTCCTAAAGACGCTGGGTCTAGTC
GCCCTAATGGCTAGGGCGGGGATTCCCATTCCCGCATCTCCTGGTGCAAG
GGTGGATCTTTTCGACCCTGTGCTCGCTGACATCGGAGATTTGCAGAGCG
TCACGGGGGATCTTTCTACTTTCAGCGGGCACCTGGTGGTAGCGGCAAAA
CCGTGGTCCTAAAGACGCTGGGTCTAGTCGCCCTAATGGCTAGGGCGGGG
ATTCCCATTCCCGCATCTCCTGGTGCAAGGGTGGATCTTTTCGACCCTGT
GCTCGCTGACATCGGAGATTTGCAGAGCGTCACGGGGGATCTTTCTACTT
TCAGCGGGCACCTGGTGGTA
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