mRNA_H-paniculata_contig28635.7805.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28635.7805.1
Unique NamemRNA_H-paniculata_contig28635.7805.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28635.7805.1 vs. uniprot
Match: A0A6H5KIL5_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.000e-10
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   10 PMVRTTWFGPQVDAIEFYGTQLAEMNQRLRPKQEHKLEAAK 132
            P VR +WFGP+ DA+ +YG +LAE+NQ+LRPKQE KLEAAK
Sbjct:    9 PQVRPSWFGPKEDAVRYYGLRLAEINQKLRPKQEAKLEAAK 49
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BLAST of mRNA_H-paniculata_contig28635.7805.1 vs. uniprot
Match: D7FMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV8_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.250e-8
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 KERPMVRTTWFGPQVDAIEFYGTQLAEMNQRLRPKQEHKLE 123
            K  P VR +WFGP+ DA+ +YG +LAE+NQ+LRPKQE KLE
Sbjct:  306 KLSPQVRPSWFGPKEDAVRYYGLRLAEINQKLRPKQEAKLE 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28635.7805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIL5_9PHAE4.000e-1068.29ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FMV8_ECTSI1.250e-863.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28635contigH-paniculata_contig28635:1211..1351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size129
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.1654234-CDS-H-paniculata_contig28635:1210..13391622929871.1654234-CDS-H-paniculata_contig28635:1210..1339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28635 1211..1339 -
1691481048.0108223-CDS-H-paniculata_contig28635:1210..13391691481048.0108223-CDS-H-paniculata_contig28635:1210..1339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28635 1211..1339 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.1849995-UTR-H-paniculata_contig28635:1339..13511622929871.1849995-UTR-H-paniculata_contig28635:1339..1351Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28635 1340..1351 -
1691481048.0193665-UTR-H-paniculata_contig28635:1339..13511691481048.0193665-UTR-H-paniculata_contig28635:1339..1351Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28635 1340..1351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28635.7805.1prot_H-paniculata_contig28635.7805.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28635 1211..1339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28635.7805.1

>prot_H-paniculata_contig28635.7805.1 ID=prot_H-paniculata_contig28635.7805.1|Name=mRNA_H-paniculata_contig28635.7805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
MVRTTWFGPQVDAIEFYGTQLAEMNQRLRPKQEHKLEAAKVGY
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mRNA from alignment at H-paniculata_contig28635:1211..1351-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28635.7805.1 ID=mRNA_H-paniculata_contig28635.7805.1|Name=mRNA_H-paniculata_contig28635.7805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig28635:1211..1351- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAAAGGCCGATGGTGAGGACGACGTGGTTCGGGCCGCAGGTAGACGC
CATCGAGTTTTACGGCACTCAATTGGCAGAGATGAATCAAAGACTCCGGC
CTAAGCAGGAGCACAAGCTGGAGGCGGCCAAGGTGGGGTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig28635:1211..1351-

>mRNA_H-paniculata_contig28635.7805.1 ID=mRNA_H-paniculata_contig28635.7805.1|Name=mRNA_H-paniculata_contig28635.7805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig28635:1211..1351- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAGGACGACGTGGTTCGGGCCGCAGGTAGACGCCATCGAGTTTTA
CGGCACTCAATTGGCAGAGATGAATCAAAGACTCCGGCCTAAGCAGGAGC
ACAAGCTGGAGGCGGCCAAGGTGGGGTATATGGTGAGGACGACGTGGTTC
GGGCCGCAGGTAGACGCCATCGAGTTTTACGGCACTCAATTGGCAGAGAT
GAATCAAAGACTCCGGCCTAAGCAGGAGCACAAGCTGGAGGCGGCCAAGG
TGGGGTAT
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