mRNA_H-paniculata_contig28627.7802.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28627.7802.1
Unique NamemRNA_H-paniculata_contig28627.7802.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A438EU98_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EU98_VITVI)

HSP 1 Score: 169 bits (427), Expect = 4.050e-47
Identity = 100/244 (40.98%), Postives = 141/244 (57.79%), Query Frame = 1
Query:   34 IFLTAYVDDLVIAGCR-EKVDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPA----VLSDIGAGVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGIYQD 750
            I L  YVDD++IAG   EK++  K  +S++F MKDLG+   +LG+ +  D++NGT+ +SQ  Y+++VL  +  +E + V TP      LS   +   +         P Y   +GSLMYA   TRPD AHAV   +R M  P ++ +   K I RYL    D  + F G S    L+G+ DAD+A D++ RKSTTG+V    G AISW +  Q++VT S+TEAEYVAA E GKE  +  G   +
Sbjct:   25 IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVP-YASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDE 265          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A438HHN1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HHN1_VITVI)

HSP 1 Score: 167 bits (423), Expect = 9.470e-47
Identity = 99/244 (40.57%), Postives = 140/244 (57.38%), Query Frame = 1
Query:   34 IFLTAYVDDLVIAGCR-EKVDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPA----VLSDIGAGVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGIYQD 750
            I L  YVDD++I G   EK++  K  +S++F MKDLG+   +LG+ +  D++NGT+ +SQ  Y+++VL  +  +E + V TP      LS   +   +         P Y   +GSLMYA   TRPD AHAV   +R M  P ++ +   K I RYL    D  + F G S    L+G+ DAD+A D++ RKSTTG+V    G AISW +  Q++VT S+TEAEYVAA E GKE  +  G   +
Sbjct:   41 IILLLYVDDMLIVGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVP-YASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDE 281          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A438JVK6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JVK6_VITVI)

HSP 1 Score: 167 bits (423), Expect = 1.100e-46
Identity = 99/234 (42.31%), Postives = 138/234 (58.97%), Query Frame = 1
Query:   34 IFLTAYVDDLVIAGCR-EKVDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPA----VLSDIGAGVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKE 720
            I L  YVDD++IAG   EK++  K  +S++F MKDLG+   +LG+ +  D++NGT+ +SQ  Y+++VL  +  +E + V TP      LS   +   +         P Y   +GSLMYA   TRPD AHAV   +R M  P ++ + T K I RYL    D  + F G S    L+G+ D D+A D++ RKSTTG+V    G AISW +  Q++VT S+TEAEYVAA E GKE
Sbjct:  102 IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKTNGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVP-YASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPRKQHWETIKWILRYLKGSLDTCLCFTGASLK--LQGYVDVDFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAAIETGKE 332          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A438GMR2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GMR2_VITVI)

HSP 1 Score: 167 bits (423), Expect = 3.380e-46
Identity = 99/244 (40.57%), Postives = 140/244 (57.38%), Query Frame = 1
Query:   34 IFLTAYVDDLVIAGCR-EKVDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPA----VLSDIGAGVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGIYQD 750
            I L  YVDD++I G   EK++  K  +S++F MKDLG+   +LG+ +  D++NGT+ +SQ  Y+++VL  +  +E + V TP      LS   +   +         P Y   +GSLMYA   TRPD AHAV   +R M  P ++ +   K I RYL    D  + F G S    L+G+ DAD+A D++ RKSTTG+V    G AISW +  Q++VT S+TEAEYVAA E GKE  +  G   +
Sbjct:   25 IILLLYVDDMLIVGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVP-YASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDE 265          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 166 bits (421), Expect = 5.070e-46
Identity = 95/239 (39.75%), Postives = 137/239 (57.32%), Query Frame = 1
Query:   40 LTAYVDDLV-IAGCREKVDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPAVLSDIGAGVQKNT-IGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGIYQD 750
            +  YVDDL+ I    E +DE K  + +R++MKDLG LS +LGI V  D+    + + Q  YI  +LK YG D+   V TPA   DI   ++K+  +    +   Y+ +VGSL+YA+  TRPD A AV   ++   +P     +  KRI RYL    +L++ F    N D L GF+DADWA D++DR STTG +   +GGA+SW ++KQ  V  S+ EAEYVA  +  +E  +   +  D
Sbjct:   50 IAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPA---DISVKLKKDDGVSNPVDPSTYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGNKD-LIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLND 284          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A177VUP4_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VUP4_9BASI)

HSP 1 Score: 167 bits (422), Expect = 1.640e-45
Identity = 92/243 (37.86%), Postives = 137/243 (56.38%), Query Frame = 1
Query:   22 GETDIFLTAYVDDLVIAGCREK-VDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPAVLSDIGAGVQKNTIGRS-GNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGD-GLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGI 741
            G++   L  YVDD+++A  +   +++ K  +   F+  DLG     LGI +  +  +GT+++ Q  Y +EVL  +G  EC    TP    D  A ++K T G +  +  +++ +VG L Y + GTRPD A+AV    R   DP         R+ RYL       +TFGG+ +G+  LEGF D+DWA D +DR+ST+G+V    GGA+SW +RKQ  V  S+ EAEYVAAG  G+E+    G+
Sbjct:   97 GDSPAMLLVYVDDILVAAPKGGGIEDVKKELLSLFKGTDLGPAHHCLGIRISRNWEDGTITLDQERYAKEVLARFGMSECNAAKTPM---DQKANLRKATDGEARADKKKFQAIVGCLAYLAQGTRPDLAYAVSTLGRFSSDPTETHRVAANRVLRYLKRTSGAKLTFGGQKDGNISLEGFVDSDWAADRDDRRSTSGFVFTVGGGAVSWGSRKQGAVALSTAEAEYVAAGVAGRESLMLSGV 336          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM)

HSP 1 Score: 166 bits (420), Expect = 2.750e-45
Identity = 96/241 (39.83%), Postives = 137/241 (56.85%), Query Frame = 1
Query:   22 GETDIFLTAYVDDLVIAGCREKVDEF-KHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPAVLSDIGAGVQKNTIGRSGNSPE-------YRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKE 720
            G+  IF+  YVDDLV+A   +++ E  KH +S+RF M DLG L   LG+E++  R +G V++ Q  +++ +L  +G  + + V TP    D G  + KN     G   E       YR VVG+LMY    TRPD A AV   ++   DP    +   KR+ RYL   P   + F  + +  G+ G++DADWA D+E R+ST+GY    NGG ISW ++KQ+ V  SSTEAEY+A  E  +E
Sbjct:   78 GQDMIFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTP---QDPGLKLTKNMC-EGGCQHEDTMKNVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SREDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQE 313          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 165 bits (417), Expect = 2.790e-45
Identity = 93/249 (37.35%), Postives = 145/249 (58.23%), Query Frame = 1
Query:   10 HISGGETDIFLTA-YVDDLVIAG-CREKVDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPAVLSDIGAGVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGIYQD 750
            ++   + DIF+ A +VDD+++AG   EK+ + K +I++RF++KD+G L  +LG++V   + +G V I Q  Y   ++K YG + C+ V TP  LS       +++     N  EY+  VGSL+Y S+ TRPD   AV+  A+   +   E ++  KRI RYL    +  + +   +N D + GF+DADWA D+ DRKST+GY  + NG A+SW ++KQ  V  S+ EAEYVA     +E  +   +  D
Sbjct:   53 YVKEEDGDIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVI--QEDGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDS--ELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTD 296          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 171 bits (434), Expect = 4.900e-45
Identity = 100/254 (39.37%), Postives = 143/254 (56.30%), Query Frame = 1
Query:    1 MFTHISGGETDIFLTAYVDDLVIAGC-REKVDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPAVLSDIGAGVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITF---GGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGIYQD 750
            +F  +  G   + +  YVDD++IAG  R  +D FK  +S+RF M DLGS   +LG+E+  DR+  T+SISQ  YI ++L+ +G   CR V TP   +     + + TI    +   Y+  +GSLMYA  G+RPD A AV   ++H   P  + +    R+ RYL    DL +++      SNG    G+ DADWA DV DR+ST+G     +GGA+SW ++KQQ +  SSTEAEYVA     KE  +   +  D
Sbjct: 1168 IFVKVENGVI-LIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERHGMANCRPVSTPMEPNLKLEKLSEATI----DPKPYQSALGSLMYAMLGSRPDLAFAVGALSKHSATPGPQHWKALMRVFRYLRGSSDLCLSYKPDSEHSNGATPLGYCDADWAGDVNDRRSTSGQAFFLHGGAVSWQSKKQQSIAQSSTEAEYVALASAAKEALWLRALLDD 1416          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A4Y1REE4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REE4_PRUDU)

HSP 1 Score: 165 bits (418), Expect = 6.460e-45
Identity = 100/235 (42.55%), Postives = 138/235 (58.72%), Query Frame = 1
Query:   19 GGETDIFLTA-YVDDLVIAGCREKV-DEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPAVLSDIGAGVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSI-----TFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAA 702
            G E +I +   YVDDL+  G  E +  EFK ++ + F M DLG +   LGIEV+   SNG V I Q  Y  E+LK +  ++C  V  P V    G  + K+  GR  +S  ++ +VGSLMY  T TRPD   AV   +R+ME P    + T KR+ RYL    DL +     T   K  GD L GF+D+D+A D++DRKST+GYV   +  A+SW ++KQ +VT S+TEAE++AA
Sbjct:   69 GKECEILIVCLYVDDLIFTGNNEDMFKEFKKSMLEEFEMTDLGKMHYFLGIEVK-QTSNG-VFIGQKKYAEEILKRFHMEDCNSVQNPIVP---GTKLNKDVGGREVDSTHFKQIVGSLMYL-TATRPDLMFAVSLISRYMESPTELHYQTAKRVLRYLKGTTDLGLFYKKETINKKEAGDELMGFSDSDYAGDLDDRKSTSGYVFMLSSAAVSWSSKKQPVVTLSTTEAEFIAA 297          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438EU98_VITVI4.050e-4740.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HHN1_VITVI9.470e-4740.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JVK6_VITVI1.100e-4642.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GMR2_VITVI3.380e-4640.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A0S7JP25_9TELE5.070e-4639.75POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A177VUP4_9BASI1.640e-4537.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GB98_PHYRM2.750e-4539.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9M6E1_PARCT2.790e-4537.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VV58_TRAPU4.900e-4539.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1REE4_PRUDU6.460e-4542.55Transposable element protein n=1 Tax=Prunus dulcis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28627contigH-paniculata_contig28627:1734..2558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue3.8e-38
Seed eggNOG ortholog164328.Phyra85518
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size756
Cds size756
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.789534-CDS-H-paniculata_contig28627:1733..20091622929870.789534-CDS-H-paniculata_contig28627:1733..2009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28627 1734..2009 +
1691481047.7855327-CDS-H-paniculata_contig28627:1733..20091691481047.7855327-CDS-H-paniculata_contig28627:1733..2009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28627 1734..2009 +
1622929870.8062446-CDS-H-paniculata_contig28627:2078..25581622929870.8062446-CDS-H-paniculata_contig28627:2078..2558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28627 2079..2558 +
1691481047.7999349-CDS-H-paniculata_contig28627:2078..25581691481047.7999349-CDS-H-paniculata_contig28627:2078..2558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28627 2079..2558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28627.7802.1prot_H-paniculata_contig28627.7802.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28627 1734..2558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28627.7802.1

>prot_H-paniculata_contig28627.7802.1 ID=prot_H-paniculata_contig28627.7802.1|Name=mRNA_H-paniculata_contig28627.7802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=252bp
MFTHISGGETDIFLTAYVDDLVIAGCREKVDEFKHNISQRFRMKDLGSLS
SVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPAVLSDIGA
GVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYR
EDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKST
TGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGIYQD
R*
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mRNA from alignment at H-paniculata_contig28627:1734..2558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28627.7802.1 ID=mRNA_H-paniculata_contig28627.7802.1|Name=mRNA_H-paniculata_contig28627.7802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=825bp|location=Sequence derived from alignment at H-paniculata_contig28627:1734..2558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCACCCACATCTCAGGGGGAGAGACAGACATTTTCTTGACCGCCTA TGTGGACGACCTGGTCATCGCTGGATGTCGTGAGAAAGTAGACGAGTTCA AGCACAACATAAGTCAACGTTTCAGGATGAAAGACTTGGGCTCCCTCTCG AGCGTGTTGGGAATAGAAGTACGATGTGACCGCTCCAATGGTACCGTATC AATATCCCAAGGTGGTTACATCCGCGAGGTACTGAAAATATATGGTTTTG ACGAGTGTCGAGGCGTGCCTACCCCTGTAGAGGGAAAATTGAAGAATTTG GCACCCGAGTTGGCCGACAAGCCCCCCGAACCAAACCCACTTAAGGCTGT ACTGTCGGACATAGGCGCAGGAGTGCAAAAAAACACCATTGGGAGAAGTG GCAATTCGCCTGAATACAGAGGCGTGGTAGGATCACTCATGTACGCCTCG ACAGGAACTAGACCTGATAGAGCACACGCGGTACACCAAGCAGCACGTCA TATGGAAGATCCATATCGGGAAGACTTCAGTACATGCAAACGCATTTCTC GCTATCTCAGTACTGTGCCTGACCTCAGCATTACGTTCGGCGGTAAGAGT AATGGCGACGGTCTGGAAGGGTTCAATGATGCCGATTGGGCGGAAGATGT CGAGGACCGAAAGTCCACAACAGGATACGTATTGAAACAGAACGGTGGTG CGATAAGTTGGTGTAATAGGAAGCAACAGTTAGTTACGTGGTCCAGTACA GAGGCAGAGTACGTTGCTGCAGGAGAAGAGGGAAAGGAGACTAGGTATTT CTTGGGGATTTATCAGGATCGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig28627:1734..2558+

>mRNA_H-paniculata_contig28627.7802.1 ID=mRNA_H-paniculata_contig28627.7802.1|Name=mRNA_H-paniculata_contig28627.7802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at H-paniculata_contig28627:1734..2558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCACCCACATCTCAGGGGGAGAGACAGACATTTTCTTGACCGCCTA
TGTGGACGACCTGGTCATCGCTGGATGTCGTGAGAAAGTAGACGAGTTCA
AGCACAACATAAGTCAACGTTTCAGGATGAAAGACTTGGGCTCCCTCTCG
AGCGTGTTGGGAATAGAAGTACGATGTGACCGCTCCAATGGTACCGTATC
AATATCCCAAGGTGGTTACATCCGCGAGGTACTGAAAATATATGGTTTTG
ACGAGTGTCGAGGCGTGCCTACCCCTATGTTCACCCACATCTCAGGGGGA
GAGACAGACATTTTCTTGACCGCCTATGTGGACGACCTGGTCATCGCTGG
ATGTCGTGAGAAAGTAGACGAGTTCAAGCACAACATAAGTCAACGTTTCA
GGATGAAAGACTTGGGCTCCCTCTCGAGCGTGTTGGGAATAGAAGTACGA
TGTGACCGCTCCAATGGTACCGTATCAATATCCCAAGGTGGTTACATCCG
CGAGGTACTGAAAATATATGGTTTTGACGAGTGTCGAGGCGTGCCTACCC
CTGCTGTACTGTCGGACATAGGCGCAGGAGTGCAAAAAAACACCATTGGG
AGAAGTGGCAATTCGCCTGAATACAGAGGCGTGGTAGGATCACTCATGTA
CGCCTCGACAGGAACTAGACCTGATAGAGCACACGCGGTACACCAAGCAG
CACGTCATATGGAAGATCCATATCGGGAAGACTTCAGTACATGCAAACGC
ATTTCTCGCTATCTCAGTACTGTGCCTGACCTCAGCATTACGTTCGGCGG
TAAGAGTAATGGCGACGGTCTGGAAGGGTTCAATGATGCCGATTGGGCGG
AAGATGTCGAGGACCGAAAGTCCACAACAGGATACGTATTGAAACAGAAC
GGTGGTGCGATAAGTTGGTGTAATAGGAAGCAACAGTTAGTTACGTGGTC
CAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGAGGGAAAGGAGACTA
GGTATTTCTTGGGGATTTATCAGGATCGATAGGCTGTACTGTCGGACATA
GGCGCAGGAGTGCAAAAAAACACCATTGGGAGAAGTGGCAATTCGCCTGA
ATACAGAGGCGTGGTAGGATCACTCATGTACGCCTCGACAGGAACTAGAC
CTGATAGAGCACACGCGGTACACCAAGCAGCACGTCATATGGAAGATCCA
TATCGGGAAGACTTCAGTACATGCAAACGCATTTCTCGCTATCTCAGTAC
TGTGCCTGACCTCAGCATTACGTTCGGCGGTAAGAGTAATGGCGACGGTC
TGGAAGGGTTCAATGATGCCGATTGGGCGGAAGATGTCGAGGACCGAAAG
TCCACAACAGGATACGTATTGAAACAGAACGGTGGTGCGATAAGTTGGTG
TAATAGGAAGCAACAGTTAGTTACGTGGTCCAGTACAGAGGCAGAGTACG
TTGCTGCAGGAGAAGAGGGAAAGGAGACTAGGTATTTCTTGGGGATTTAT
CAGGATCGATAG
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