prot_H-paniculata_contig28627.7802.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig28627.7802.1
Unique Nameprot_H-paniculata_contig28627.7802.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length252
Homology
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A438EU98_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EU98_VITVI)

HSP 1 Score: 169 bits (427), Expect = 4.050e-47
Identity = 100/244 (40.98%), Postives = 141/244 (57.79%), Query Frame = 0
Query:   12 IFLTAYVDDLVIAGCR-EKVDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPA----VLSDIGAGVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGIYQD 250
            I L  YVDD++IAG   EK++  K  +S++F MKDLG+   +LG+ +  D++NGT+ +SQ  Y+++VL  +  +E + V TP      LS   +   +         P Y   +GSLMYA   TRPD AHAV   +R M  P ++ +   K I RYL    D  + F G S    L+G+ DAD+A D++ RKSTTG+V    G AISW +  Q++VT S+TEAEYVAA E GKE  +  G   +
Sbjct:   25 IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVP-YASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDE 265          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A438HHN1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HHN1_VITVI)

HSP 1 Score: 167 bits (423), Expect = 9.470e-47
Identity = 99/244 (40.57%), Postives = 140/244 (57.38%), Query Frame = 0
Query:   12 IFLTAYVDDLVIAGCR-EKVDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPA----VLSDIGAGVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGIYQD 250
            I L  YVDD++I G   EK++  K  +S++F MKDLG+   +LG+ +  D++NGT+ +SQ  Y+++VL  +  +E + V TP      LS   +   +         P Y   +GSLMYA   TRPD AHAV   +R M  P ++ +   K I RYL    D  + F G S    L+G+ DAD+A D++ RKSTTG+V    G AISW +  Q++VT S+TEAEYVAA E GKE  +  G   +
Sbjct:   41 IILLLYVDDMLIVGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVP-YASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDE 281          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A438JVK6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JVK6_VITVI)

HSP 1 Score: 167 bits (423), Expect = 1.100e-46
Identity = 99/234 (42.31%), Postives = 138/234 (58.97%), Query Frame = 0
Query:   12 IFLTAYVDDLVIAGCR-EKVDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPA----VLSDIGAGVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKE 240
            I L  YVDD++IAG   EK++  K  +S++F MKDLG+   +LG+ +  D++NGT+ +SQ  Y+++VL  +  +E + V TP      LS   +   +         P Y   +GSLMYA   TRPD AHAV   +R M  P ++ + T K I RYL    D  + F G S    L+G+ D D+A D++ RKSTTG+V    G AISW +  Q++VT S+TEAEYVAA E GKE
Sbjct:  102 IILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKTNGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVP-YASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPRKQHWETIKWILRYLKGSLDTCLCFTGASLK--LQGYVDVDFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAAIETGKE 332          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A438GMR2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GMR2_VITVI)

HSP 1 Score: 167 bits (423), Expect = 3.380e-46
Identity = 99/244 (40.57%), Postives = 140/244 (57.38%), Query Frame = 0
Query:   12 IFLTAYVDDLVIAGCR-EKVDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPA----VLSDIGAGVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGIYQD 250
            I L  YVDD++I G   EK++  K  +S++F MKDLG+   +LG+ +  D++NGT+ +SQ  Y+++VL  +  +E + V TP      LS   +   +         P Y   +GSLMYA   TRPD AHAV   +R M  P ++ +   K I RYL    D  + F G S    L+G+ DAD+A D++ RKSTTG+V    G AISW +  Q++VT S+TEAEYVAA E GKE  +  G   +
Sbjct:   25 IILLLYVDDMLIVGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVP-YASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDE 265          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 166 bits (421), Expect = 5.070e-46
Identity = 95/239 (39.75%), Postives = 137/239 (57.32%), Query Frame = 0
Query:   14 LTAYVDDLV-IAGCREKVDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPAVLSDIGAGVQKNT-IGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGIYQD 250
            +  YVDDL+ I    E +DE K  + +R++MKDLG LS +LGI V  D+    + + Q  YI  +LK YG D+   V TPA   DI   ++K+  +    +   Y+ +VGSL+YA+  TRPD A AV   ++   +P     +  KRI RYL    +L++ F    N D L GF+DADWA D++DR STTG +   +GGA+SW ++KQ  V  S+ EAEYVA  +  +E  +   +  D
Sbjct:   50 IAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPA---DISVKLKKDDGVSNPVDPSTYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGNKD-LIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLND 284          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A177VUP4_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VUP4_9BASI)

HSP 1 Score: 167 bits (422), Expect = 1.640e-45
Identity = 92/243 (37.86%), Postives = 137/243 (56.38%), Query Frame = 0
Query:    8 GETDIFLTAYVDDLVIAGCREK-VDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPAVLSDIGAGVQKNTIGRS-GNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGD-GLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGI 247
            G++   L  YVDD+++A  +   +++ K  +   F+  DLG     LGI +  +  +GT+++ Q  Y +EVL  +G  EC    TP    D  A ++K T G +  +  +++ +VG L Y + GTRPD A+AV    R   DP         R+ RYL       +TFGG+ +G+  LEGF D+DWA D +DR+ST+G+V    GGA+SW +RKQ  V  S+ EAEYVAAG  G+E+    G+
Sbjct:   97 GDSPAMLLVYVDDILVAAPKGGGIEDVKKELLSLFKGTDLGPAHHCLGIRISRNWEDGTITLDQERYAKEVLARFGMSECNAAKTPM---DQKANLRKATDGEARADKKKFQAIVGCLAYLAQGTRPDLAYAVSTLGRFSSDPTETHRVAANRVLRYLKRTSGAKLTFGGQKDGNISLEGFVDSDWAADRDDRRSTSGFVFTVGGGAVSWGSRKQGAVALSTAEAEYVAAGVAGRESLMLSGV 336          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM)

HSP 1 Score: 166 bits (420), Expect = 2.750e-45
Identity = 96/241 (39.83%), Postives = 137/241 (56.85%), Query Frame = 0
Query:    8 GETDIFLTAYVDDLVIAGCREKVDEF-KHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPAVLSDIGAGVQKNTIGRSGNSPE-------YRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKE 240
            G+  IF+  YVDDLV+A   +++ E  KH +S+RF M DLG L   LG+E++  R +G V++ Q  +++ +L  +G  + + V TP    D G  + KN     G   E       YR VVG+LMY    TRPD A AV   ++   DP    +   KR+ RYL   P   + F  + +  G+ G++DADWA D+E R+ST+GY    NGG ISW ++KQ+ V  SSTEAEY+A  E  +E
Sbjct:   78 GQDMIFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTP---QDPGLKLTKNMC-EGGCQHEDTMKNVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SREDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQE 313          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 165 bits (417), Expect = 2.790e-45
Identity = 93/249 (37.35%), Postives = 145/249 (58.23%), Query Frame = 0
Query:    4 HISGGETDIFLTA-YVDDLVIAG-CREKVDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPAVLSDIGAGVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGIYQD 250
            ++   + DIF+ A +VDD+++AG   EK+ + K +I++RF++KD+G L  +LG++V   + +G V I Q  Y   ++K YG + C+ V TP  LS       +++     N  EY+  VGSL+Y S+ TRPD   AV+  A+   +   E ++  KRI RYL    +  + +   +N D + GF+DADWA D+ DRKST+GY  + NG A+SW ++KQ  V  S+ EAEYVA     +E  +   +  D
Sbjct:   53 YVKEEDGDIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVI--QEDGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDS--ELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTD 296          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 171 bits (434), Expect = 4.900e-45
Identity = 100/254 (39.37%), Postives = 143/254 (56.30%), Query Frame = 0
Query:    1 MFTHISGGETDIFLTAYVDDLVIAGC-REKVDEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPAVLSDIGAGVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSITF---GGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGIYQD 250
            +F  +  G   + +  YVDD++IAG  R  +D FK  +S+RF M DLGS   +LG+E+  DR+  T+SISQ  YI ++L+ +G   CR V TP   +     + + TI    +   Y+  +GSLMYA  G+RPD A AV   ++H   P  + +    R+ RYL    DL +++      SNG    G+ DADWA DV DR+ST+G     +GGA+SW ++KQQ +  SSTEAEYVA     KE  +   +  D
Sbjct: 1168 IFVKVENGVI-LIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERHGMANCRPVSTPMEPNLKLEKLSEATI----DPKPYQSALGSLMYAMLGSRPDLAFAVGALSKHSATPGPQHWKALMRVFRYLRGSSDLCLSYKPDSEHSNGATPLGYCDADWAGDVNDRRSTSGQAFFLHGGAVSWQSKKQQSIAQSSTEAEYVALASAAKEALWLRALLDD 1416          
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Match: A0A4Y1REE4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REE4_PRUDU)

HSP 1 Score: 165 bits (418), Expect = 6.460e-45
Identity = 100/235 (42.55%), Postives = 138/235 (58.72%), Query Frame = 0
Query:    7 GGETDIFLTA-YVDDLVIAGCREKV-DEFKHNISQRFRMKDLGSLSSVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPAVLSDIGAGVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYREDFSTCKRISRYLSTVPDLSI-----TFGGKSNGDGLEGFNDADWAEDVEDRKSTTGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAA 234
            G E +I +   YVDDL+  G  E +  EFK ++ + F M DLG +   LGIEV+   SNG V I Q  Y  E+LK +  ++C  V  P V    G  + K+  GR  +S  ++ +VGSLMY  T TRPD   AV   +R+ME P    + T KR+ RYL    DL +     T   K  GD L GF+D+D+A D++DRKST+GYV   +  A+SW ++KQ +VT S+TEAE++AA
Sbjct:   69 GKECEILIVCLYVDDLIFTGNNEDMFKEFKKSMLEEFEMTDLGKMHYFLGIEVK-QTSNG-VFIGQKKYAEEILKRFHMEDCNSVQNPIVP---GTKLNKDVGGREVDSTHFKQIVGSLMYL-TATRPDLMFAVSLISRYMESPTELHYQTAKRVLRYLKGTTDLGLFYKKETINKKEAGDELMGFSDSDYAGDLDDRKSTSGYVFMLSSAAVSWSSKKQPVVTLSTTEAEFIAA 297          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28627.7802.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438EU98_VITVI4.050e-4740.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HHN1_VITVI9.470e-4740.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JVK6_VITVI1.100e-4642.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GMR2_VITVI3.380e-4640.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A0S7JP25_9TELE5.070e-4639.75POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A177VUP4_9BASI1.640e-4537.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GB98_PHYRM2.750e-4539.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9M6E1_PARCT2.790e-4537.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VV58_TRAPU4.900e-4539.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1REE4_PRUDU6.460e-4542.55Transposable element protein n=1 Tax=Prunus dulcis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 7..93
e-value: 1.7E-14
score: 54.1
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 113..234
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 9..227
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 113..234

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28627contigH-paniculata_contig28627:1734..2558 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28627.7802.1mRNA_H-paniculata_contig28627.7802.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig28627 1734..2558 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig28627.7802.1 ID=prot_H-paniculata_contig28627.7802.1|Name=mRNA_H-paniculata_contig28627.7802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=252bp
MFTHISGGETDIFLTAYVDDLVIAGCREKVDEFKHNISQRFRMKDLGSLS
SVLGIEVRCDRSNGTVSISQGGYIREVLKIYGFDECRGVPTPAVLSDIGA
GVQKNTIGRSGNSPEYRGVVGSLMYASTGTRPDRAHAVHQAARHMEDPYR
EDFSTCKRISRYLSTVPDLSITFGGKSNGDGLEGFNDADWAEDVEDRKST
TGYVLKQNGGAISWCNRKQQLVTWSSTEAEYVAAGEEGKETRYFLGIYQD
R*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like