mRNA_H-paniculata_contig28610.7797.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 119 bits (297), Expect = 3.000e-28 Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 1
Query: 4 DKLVVGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HFPGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKVVD 441
D+ ++G+K ++K K DG VEKYK RLVAQGF Q+EG+ Y E ++P SIR+LLA AA D E + AFL ++EE+Y+++P AV +L A+Y QA R W K ++ + F + +AD C+F K +D
Sbjct: 1035 DRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMD 1180
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A5E8C1Z7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1Z7_9ASCO) HSP 1 Score: 116 bits (290), Expect = 2.610e-27 Identity = 55/142 (38.73%), Postives = 90/142 (63.38%), Query Frame = 1
Query: 16 VGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HF--PGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKV 435
+GTK + K+K++ DG+++KYK RLV QGFRQ GV Y + ++P +++R++ A +AAK+ E H + AFL ++E++Y++ P H PG V KLN ++Y QA WN K D + A+ ++ A+ +PC+F K+
Sbjct: 623 LGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI 764
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A5E8BZM0_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BZM0_9ASCO) HSP 1 Score: 116 bits (290), Expect = 2.610e-27 Identity = 55/142 (38.73%), Postives = 90/142 (63.38%), Query Frame = 1
Query: 16 VGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HF--PGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKV 435
+GTK + K+K++ DG+++KYK RLV QGFRQ GV Y + ++P +++R++ A +AAK+ E H + AFL ++E++Y++ P H PG V KLN ++Y QA WN K D + A+ ++ A+ +PC+F K+
Sbjct: 936 LGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI 1077
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A5E8C1N6_9ASCO (Integrase catalytic domain-containing protein n=3 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1N6_9ASCO) HSP 1 Score: 116 bits (290), Expect = 2.690e-27 Identity = 55/142 (38.73%), Postives = 90/142 (63.38%), Query Frame = 1
Query: 16 VGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HF--PGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKV 435
+GTK + K+K++ DG+++KYK RLV QGFRQ GV Y + ++P +++R++ A +AAK+ E H + AFL ++E++Y++ P H PG V KLN ++Y QA WN K D + A+ ++ A+ +PC+F K+
Sbjct: 1916 LGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI 2057
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A5E8C8U5_9ASCO (Uncharacterized protein n=2 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C8U5_9ASCO) HSP 1 Score: 116 bits (290), Expect = 2.710e-27 Identity = 55/142 (38.73%), Postives = 90/142 (63.38%), Query Frame = 1
Query: 16 VGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HF--PGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKV 435
+GTK + K+K++ DG+++KYK RLV QGFRQ GV Y + ++P +++R++ A +AAK+ E H + AFL ++E++Y++ P H PG V KLN ++Y QA WN K D + A+ ++ A+ +PC+F K+
Sbjct: 2408 LGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI 2549
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: M8BR71_AEGTA (Integrase catalytic domain-containing protein n=1 Tax=Aegilops tauschii TaxID=37682 RepID=M8BR71_AEGTA) HSP 1 Score: 112 bits (280), Expect = 5.880e-26 Identity = 63/149 (42.28%), Postives = 87/149 (58.39%), Query Frame = 1
Query: 1 MDKLVVGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HFPGA--VGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKVVD 441
+D+ + K I+K+K DGNV YK RLVA GFRQ++G+ Y E +SP S+R++LA AA D E + AFL + EE+Y+ PE F GA VGKL ++Y VQA R WNI F + + A F Q + C+++K VD
Sbjct: 216 LDERPIENKWIFKKKTEADGNVTVYKARLVAMGFRQVQGIDYDETFSPIAMLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLKEELYMMQPEGFVDPKGANTVGKLQRSIYGLVQASRSWNIHFDEVIKACGFIQTFGEACIYKKKVD 364
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A6H5JRC6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC6_9PHAE) HSP 1 Score: 112 bits (279), Expect = 6.350e-26 Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 1
Query: 16 VGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HFPGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKVVD 441
VG+K + K +K+G +EK+K RLVA+G QI V Y +SP P SI+++LA A+ K H+ +QA+ +DEEV++++P + K A+Y +GR+W D + FEQ +ADPC+FRK+VD
Sbjct: 416 VGSKWCFSWKTNKEGKIEKFKARLVARGLWQIPNVDYFHSFSPCPLSVSIKLMLAVASKKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKHSGRQWGYHAADTLVENGFEQCKADPCVFRKMVD 557
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A146LHR9_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LHR9_LYGHE) HSP 1 Score: 111 bits (278), Expect = 1.000e-25 Identity = 57/142 (40.14%), Postives = 85/142 (59.86%), Query Frame = 1
Query: 7 KLVVGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HFPGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRK 432
K + TK +YK K++ DG ++K+K RLV QGF Q G+ Y + +SP +++R LL+ AA+K+ + F AFL ++EE+YI+ PE F V KLN ++Y QA R WN +F + I F+Q+ AD C+F K
Sbjct: 283 KKAISTKWVYKVKMNPDGTIDKFKARLVVQGFSQRLGIDYEQTFSPVAKASTVRTLLSVAASKNMKLMQFDVSTAFLYGYLEEEIYIKQPEGFDDGSNKVCKLNRSLYGLKQAPRCWNQRFAAFLLKIGFKQSNADTCLFLK 424
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE) HSP 1 Score: 106 bits (264), Expect = 1.050e-25 Identity = 52/133 (39.10%), Postives = 78/133 (58.65%), Query Frame = 1
Query: 43 KVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HFPGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKVVD 441
K +K+G V+K+K LVA+GF QI V + SP P+ ASI+++LA A K H+ +QA+ +DEEV++ IP + + + A+Y Q+GR+W D + FEQ +ADPC+FRK+VD
Sbjct: 10 KTNKEGKVDKFKALLVARGFSQIPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVD 142
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A6H5K8S0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8S0_9PHAE) HSP 1 Score: 110 bits (275), Expect = 1.230e-25 Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 1
Query: 16 VGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HFPGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKVVD 441
V +K + K +K+G ++ +K RLVA+GF QI V Y SP P+ ASI+++LA A K H+ +QA+ +DEEV++++P + K A+Y Q+GR+W D + FEQ +ADPC+FRK+VD
Sbjct: 181 VSSKWCFSWKTNKEGQIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVD 322 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig28610.7797.1 >prot_H-paniculata_contig28610.7797.1 ID=prot_H-paniculata_contig28610.7797.1|Name=mRNA_H-paniculata_contig28610.7797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp MDKLVVGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPback to top mRNA from alignment at H-paniculata_contig28610:998..1438- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig28610.7797.1 ID=mRNA_H-paniculata_contig28610.7797.1|Name=mRNA_H-paniculata_contig28610.7797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at H-paniculata_contig28610:998..1438- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig28610:998..1438- >mRNA_H-paniculata_contig28610.7797.1 ID=mRNA_H-paniculata_contig28610.7797.1|Name=mRNA_H-paniculata_contig28610.7797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig28610:998..1438- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |