mRNA_H-paniculata_contig28610.7797.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28610.7797.1
Unique NamemRNA_H-paniculata_contig28610.7797.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 119 bits (297), Expect = 3.000e-28
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 1
Query:    4 DKLVVGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HFPGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKVVD 441
            D+ ++G+K ++K K   DG VEKYK RLVAQGF Q+EG+ Y E ++P     SIR+LLA AA  D E      + AFL   ++EE+Y+++P        AV +L  A+Y   QA R W  K   ++  + F + +AD C+F K +D
Sbjct: 1035 DRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMD 1180          
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A5E8C1Z7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1Z7_9ASCO)

HSP 1 Score: 116 bits (290), Expect = 2.610e-27
Identity = 55/142 (38.73%), Postives = 90/142 (63.38%), Query Frame = 1
Query:   16 VGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HF--PGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKV 435
            +GTK + K+K++ DG+++KYK RLV QGFRQ  GV Y + ++P    +++R++ A +AAK+ E  H   + AFL   ++E++Y++ P    H   PG V KLN ++Y   QA   WN K  D + A+ ++ A+ +PC+F K+
Sbjct:  623 LGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI 764          
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A5E8BZM0_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BZM0_9ASCO)

HSP 1 Score: 116 bits (290), Expect = 2.610e-27
Identity = 55/142 (38.73%), Postives = 90/142 (63.38%), Query Frame = 1
Query:   16 VGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HF--PGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKV 435
            +GTK + K+K++ DG+++KYK RLV QGFRQ  GV Y + ++P    +++R++ A +AAK+ E  H   + AFL   ++E++Y++ P    H   PG V KLN ++Y   QA   WN K  D + A+ ++ A+ +PC+F K+
Sbjct:  936 LGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI 1077          
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A5E8C1N6_9ASCO (Integrase catalytic domain-containing protein n=3 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1N6_9ASCO)

HSP 1 Score: 116 bits (290), Expect = 2.690e-27
Identity = 55/142 (38.73%), Postives = 90/142 (63.38%), Query Frame = 1
Query:   16 VGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HF--PGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKV 435
            +GTK + K+K++ DG+++KYK RLV QGFRQ  GV Y + ++P    +++R++ A +AAK+ E  H   + AFL   ++E++Y++ P    H   PG V KLN ++Y   QA   WN K  D + A+ ++ A+ +PC+F K+
Sbjct: 1916 LGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI 2057          
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A5E8C8U5_9ASCO (Uncharacterized protein n=2 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C8U5_9ASCO)

HSP 1 Score: 116 bits (290), Expect = 2.710e-27
Identity = 55/142 (38.73%), Postives = 90/142 (63.38%), Query Frame = 1
Query:   16 VGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HF--PGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKV 435
            +GTK + K+K++ DG+++KYK RLV QGFRQ  GV Y + ++P    +++R++ A +AAK+ E  H   + AFL   ++E++Y++ P    H   PG V KLN ++Y   QA   WN K  D + A+ ++ A+ +PC+F K+
Sbjct: 2408 LGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAAKKEPCLFYKI 2549          
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: M8BR71_AEGTA (Integrase catalytic domain-containing protein n=1 Tax=Aegilops tauschii TaxID=37682 RepID=M8BR71_AEGTA)

HSP 1 Score: 112 bits (280), Expect = 5.880e-26
Identity = 63/149 (42.28%), Postives = 87/149 (58.39%), Query Frame = 1
Query:    1 MDKLVVGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HFPGA--VGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKVVD 441
            +D+  +  K I+K+K   DGNV  YK RLVA GFRQ++G+ Y E +SP     S+R++LA AA  D E      + AFL   + EE+Y+  PE F    GA  VGKL  ++Y  VQA R WNI F + + A  F Q   + C+++K VD
Sbjct:  216 LDERPIENKWIFKKKTEADGNVTVYKARLVAMGFRQVQGIDYDETFSPIAMLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLKEELYMMQPEGFVDPKGANTVGKLQRSIYGLVQASRSWNIHFDEVIKACGFIQTFGEACIYKKKVD 364          
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A6H5JRC6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 6.350e-26
Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 1
Query:   16 VGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HFPGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKVVD 441
            VG+K  +  K +K+G +EK+K RLVA+G  QI  V Y   +SP P   SI+++LA A+ K     H+  +QA+    +DEEV++++P         + K   A+Y    +GR+W     D +    FEQ +ADPC+FRK+VD
Sbjct:  416 VGSKWCFSWKTNKEGKIEKFKARLVARGLWQIPNVDYFHSFSPCPLSVSIKLMLAVASKKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKHSGRQWGYHAADTLVENGFEQCKADPCVFRKMVD 557          
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A146LHR9_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LHR9_LYGHE)

HSP 1 Score: 111 bits (278), Expect = 1.000e-25
Identity = 57/142 (40.14%), Postives = 85/142 (59.86%), Query Frame = 1
Query:    7 KLVVGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HFPGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRK 432
            K  + TK +YK K++ DG ++K+K RLV QGF Q  G+ Y + +SP    +++R LL+ AA+K+ +   F    AFL   ++EE+YI+ PE F      V KLN ++Y   QA R WN +F   +  I F+Q+ AD C+F K
Sbjct:  283 KKAISTKWVYKVKMNPDGTIDKFKARLVVQGFSQRLGIDYEQTFSPVAKASTVRTLLSVAASKNMKLMQFDVSTAFLYGYLEEEIYIKQPEGFDDGSNKVCKLNRSLYGLKQAPRCWNQRFAAFLLKIGFKQSNADTCLFLK 424          
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.050e-25
Identity = 52/133 (39.10%), Postives = 78/133 (58.65%), Query Frame = 1
Query:   43 KVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HFPGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKVVD 441
            K +K+G V+K+K  LVA+GF QI  V +    SP P+ ASI+++LA A  K     H+  +QA+    +DEEV++ IP  +      + +   A+Y   Q+GR+W     D +    FEQ +ADPC+FRK+VD
Sbjct:   10 KTNKEGKVDKFKALLVARGFSQIPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVD 142          
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Match: A0A6H5K8S0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8S0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.230e-25
Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 1
Query:   16 VGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTPAPASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*HFPGAVGKLNNAMYWFVQAGRRWNIKFCDDMTAIEFEQARADPCMFRKVVD 441
            V +K  +  K +K+G ++ +K RLVA+GF QI  V Y    SP P+ ASI+++LA A  K     H+  +QA+    +DEEV++++P         + K   A+Y   Q+GR+W     D +    FEQ +ADPC+FRK+VD
Sbjct:  181 VSSKWCFSWKTNKEGQIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVD 322          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28610.7797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK3.000e-2840.41Integrase catalytic domain-containing protein (Fra... [more]
A0A5E8C1Z7_9ASCO2.610e-2738.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8BZM0_9ASCO2.610e-2738.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C1N6_9ASCO2.690e-2738.73Integrase catalytic domain-containing protein n=3 ... [more]
A0A5E8C8U5_9ASCO2.710e-2738.73Uncharacterized protein n=2 Tax=Saprochaete ingens... [more]
M8BR71_AEGTA5.880e-2642.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRC6_9PHAE6.350e-2638.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A146LHR9_LYGHE1.000e-2540.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JIS9_9PHAE1.050e-2539.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K8S0_9PHAE1.230e-2538.03Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28610contigH-paniculata_contig28610:998..1438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score81.6
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog2711.XP_006493639.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.LRR receptor-like serine threonine-protein kinase
EggNOG OGs37Y8N@33090,3GXD3@35493,COG2801@1,KOG0017@2759
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size441
Cds size288
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.4675446-UTR-H-paniculata_contig28610:997..11501622929870.4675446-UTR-H-paniculata_contig28610:997..1150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28610 998..1150 -
1691481047.6392941-UTR-H-paniculata_contig28610:997..11501691481047.6392941-UTR-H-paniculata_contig28610:997..1150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28610 998..1150 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.4876235-CDS-H-paniculata_contig28610:1150..14381622929870.4876235-CDS-H-paniculata_contig28610:1150..1438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28610 1151..1438 -
1691481047.6607578-CDS-H-paniculata_contig28610:1150..14381691481047.6607578-CDS-H-paniculata_contig28610:1150..1438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28610 1151..1438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28610.7797.1prot_H-paniculata_contig28610.7797.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28610 1151..1438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28610.7797.1

>prot_H-paniculata_contig28610.7797.1 ID=prot_H-paniculata_contig28610.7797.1|Name=mRNA_H-paniculata_contig28610.7797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MDKLVVGTKMIYKRKVSKDGNVEKYKYRLVAQGFRQIEGVHYTEKYSPTP
APASIRMLLATAAAKDGEKRHFKAEQAFLKVGIDEEVYIEIPERF*
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mRNA from alignment at H-paniculata_contig28610:998..1438-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28610.7797.1 ID=mRNA_H-paniculata_contig28610.7797.1|Name=mRNA_H-paniculata_contig28610.7797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at H-paniculata_contig28610:998..1438- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAAGCTTGTGGTGGGAACGAAGATGATTTACAAACGCAAGGTCAG CAAGGACGGTAATGTGGAGAAGTACAAATATAGACTTGTCGCCCAGGGCT TCCGGCAGATCGAAGGGGTACACTACACCGAGAAGTACTCACCTACGCCG GCGCCCGCGTCCATTCGGATGCTATTGGCAACCGCAGCGGCGAAGGACGG AGAGAAGCGACATTTCAAAGCTGAACAGGCGTTTCTGAAGGTGGGCATTG ACGAGGAGGTGTACATCGAGATCCCCGAAAGGTTTTAACATTTCCCAGGA GCAGTGGGTAAGCTGAACAATGCAATGTACTGGTTCGTTCAGGCGGGGAG ACGCTGGAACATTAAGTTCTGCGATGACATGACGGCAATCGAGTTCGAGC AGGCAAGGGCAGACCCTTGCATGTTCAGGAAGGTTGTCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig28610:998..1438-

>mRNA_H-paniculata_contig28610.7797.1 ID=mRNA_H-paniculata_contig28610.7797.1|Name=mRNA_H-paniculata_contig28610.7797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig28610:998..1438- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAAGCTTGTGGTGGGAACGAAGATGATTTACAAACGCAAGGTCAG
CAAGGACGGTAATGTGGAGAAGTACAAATATAGACTTGTCGCCCAGGGCT
TCCGGCAGATCGAAGGGGTACACTACACCGAGAAGTACTCACCTACGCCG
GCGCCCGCGTCCATTCGGATGCTATTGGCAACCGCAGCGGCGAAGGACGG
AGAGAAGCGACATTTCAAAGCTGAACAGGCGTTTCTGAAGGTGGGCATTG
ACGAGGAGGTGTACATCGAGATCCCCGAAAGGTTTTAAATGGACAAGCTT
GTGGTGGGAACGAAGATGATTTACAAACGCAAGGTCAGCAAGGACGGTAA
TGTGGAGAAGTACAAATATAGACTTGTCGCCCAGGGCTTCCGGCAGATCG
AAGGGGTACACTACACCGAGAAGTACTCACCTACGCCGGCGCCCGCGTCC
ATTCGGATGCTATTGGCAACCGCAGCGGCGAAGGACGGAGAGAAGCGACA
TTTCAAAGCTGAACAGGCGTTTCTGAAGGTGGGCATTGACGAGGAGGTGT
ACATCGAGATCCCCGAAAGGTTTTAA
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