mRNA_H-paniculata_contig285.7768.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig285.7768.1 vs. uniprot
Match: D7FXJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ0_ECTSI) HSP 1 Score: 246 bits (627), Expect = 9.560e-64 Identity = 151/326 (46.32%), Postives = 198/326 (60.74%), Query Frame = 2
Query: 185 GQAVKVKVKAEPVEVVQMLTADGRYEDAADLVLQYWSDRPNVMHDEMAKVIVELSRACVEAEDISQAYARAPSPPLPLVTRGVGPLKPRVPRHGSDAT---------ECGERAASLWLVLRQLLRLDAADSNFSYHKVAAKELLDAAPSTKLPDWLESSFIGKPCSQADDPPSDANAYPPPPPRGSDEPWKAFAPPRGCE-FKGANPTALLNLYVFAGRLEEACLFLSRLLNTEAFEGKSAARNARMEKAPSEMGGSDWLPYASIDRLLALCEASLER--GAPLSSSTADKKQEESRRADLEAALGLAENRLIKYFKIAKSITENA 1126
G V V+ E VV+ L GRYE+AAD+VL+ + +P +M +EM K++ L+RACV EDI++ Y P PPL RGVGPLKPRVP ++A E A SLW VLRQLLRLD+AD+NFSYH A LL+ P++ LP W+E S++G + DPP++ANA+PPP PR PWKAF RG G +PT LL++YV GRLEEACLFLSR+L+T + A E P + GG+D+LPYASIDRL AL EASL R G P + +K+ L A A+ RL+ Y K+AK++++ A
Sbjct: 1481 GARVWWTVRGERRGVVEALALGGRYEEAADVVLEGLAHQPRLMVEEMDKLVSALARACVRTEDIAKGYEVGPLPPL---VRGVGPLKPRVPVPSAEAXXXXXXXXXXRAPEHATSLWPVLRQLLRLDSADNNFSYHTAAVAVLLEGMPASTLPRWVEDSYLGL-GQELPDPPANANAFPPPQPRALLAPWKAFTSGRGGNGASGPDPTKLLDMYVMDGRLEEACLFLSRVLDTR----EVGDIGALTELVPEKDGGTDYLPYASIDRLFALSEASLARSKGPPTT-----QKEGWVTAGGLAGAFETAQERLVGYLKVAKAVSDQA 1793
BLAST of mRNA_H-paniculata_contig285.7768.1 vs. uniprot
Match: A0A6H5KLL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL3_9PHAE) HSP 1 Score: 245 bits (625), Expect = 1.310e-63 Identity = 151/327 (46.18%), Postives = 201/327 (61.47%), Query Frame = 2
Query: 185 GQAVKVKV-KAEPVEVVQMLTADGRYEDAADLVLQYWSDRPNVMHDEMAKVIVELSRACVEAEDISQAYARAPSPPLPLVTRGVGPLKPRVPRHGSDAT---------ECGERAASLWLVLRQLLRLDAADSNFSYHKVAAKELLDAAPSTKLPDWLESSFIGKPCSQADDPPSDANAYPPPPPRGSDEPWKAFAPPRGCEF-KGANPTALLNLYVFAGRLEEACLFLSRLLNTEAFEGKSAARNARMEKAPSEMGGSDWLPYASIDRLLALCEASLER--GAPLSSSTADKKQEESRRADLEAALGLAENRLIKYFKIAKSITENA 1126
G V V+V A+ +V+ L GRYE+AAD+VL+ + +P +M +EM K++ L+RACV EDI+Q Y P LPL+ RGVGPLKPRVP ++A E A SLW VLRQLLRLD+AD+NFSYH LL+ P++ LP W+E S++G + DPP++ANA+ PP P+ PWKAF RG G +PT LL++YV GRLEEACLFLSR+L+T A E P + GG+D+LPYASIDRL AL EASL R GAP + +K+ L A A+ RL++YFK+AK++++ A
Sbjct: 1082 GVQVSVEVGNADVSGLVEALALAGRYEEAADVVLEGLAHQPRLMVEEMDKLVSALARACVRTEDIAQGYEVGP---LPLLVRGVGPLKPRVPVPWAEAEGDTTXXXXXRAQEHATSLWPVLRQLLRLDSADNNFSYHTATVAVLLEEMPASTLPPWVEDSYLGL-GQEVPDPPANANAFLPPQPQALLAPWKAFTSGRGGNGPSGPDPTKLLDMYVLDGRLEEACLFLSRVLDTREIGDIGALT----ELVPEKDGGTDYLPYASIDRLFALSEASLARSKGAPTT-----QKEGRVTAGGLAGAFETAQERLVQYFKVAKAVSDQA 1395 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig285.7768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig285.7768.1 >prot_H-paniculata_contig285.7768.1 ID=prot_H-paniculata_contig285.7768.1|Name=mRNA_H-paniculata_contig285.7768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=318bp MLTADGRYEDAADLVLQYWSDRPNVMHDEMAKVIVELSRACVEAEDISQAback to top mRNA from alignment at H-paniculata_contig285:3753..19690- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig285.7768.1 ID=mRNA_H-paniculata_contig285.7768.1|Name=mRNA_H-paniculata_contig285.7768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15938bp|location=Sequence derived from alignment at H-paniculata_contig285:3753..19690- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig285:3753..19690- >mRNA_H-paniculata_contig285.7768.1 ID=mRNA_H-paniculata_contig285.7768.1|Name=mRNA_H-paniculata_contig285.7768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at H-paniculata_contig285:3753..19690- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |