prot_H-paniculata_contig285.7768.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig285.7768.1
Unique Nameprot_H-paniculata_contig285.7768.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length318
Homology
BLAST of mRNA_H-paniculata_contig285.7768.1 vs. uniprot
Match: A0A6H5KLL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL3_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 2.630e-68
Identity = 145/308 (47.08%), Postives = 191/308 (62.01%), Query Frame = 0
Query:    2 LTADGRYEDAADLVLQYWSDRPNVMHDEMAKVIVELSRACVEAEDISQAYARAPSPPLPLVTRGVGPLKPRVPRHGSDAT---------ECGERAASLWLVLRQLLRLDAADSNFSYHKVAAKELLDAAPSTKLPDWLESSFIGKPCSQADDPPSDANAYPPPPPRGSDEPWKAFAPPRGCEF-KGANPTALLNLYVFAGRLEEACLFLSRLLNTEAFEGKSAARNARMEKAPSEMGGSDWLPYASIDRLLALCEASLER--GAPLSSSTADKKQEESRRADLEAALGLAENRLIKYFKIAKSITENA 297
            L   GRYE+AAD+VL+  + +P +M +EM K++  L+RACV  EDI+Q Y   P   LPL+ RGVGPLKPRVP   ++A             E A SLW VLRQLLRLD+AD+NFSYH      LL+  P++ LP W+E S++G    +  DPP++ANA+ PP P+    PWKAF   RG     G +PT LL++YV  GRLEEACLFLSR+L+T       A      E  P + GG+D+LPYASIDRL AL EASL R  GAP +     +K+       L  A   A+ RL++YFK+AK++++ A
Sbjct: 1101 LALAGRYEEAADVVLEGLAHQPRLMVEEMDKLVSALARACVRTEDIAQGYEVGP---LPLLVRGVGPLKPRVPVPWAEAEGDTTXXXXXRAQEHATSLWPVLRQLLRLDSADNNFSYHTATVAVLLEEMPASTLPPWVEDSYLGL-GQEVPDPPANANAFLPPQPQALLAPWKAFTSGRGGNGPSGPDPTKLLDMYVLDGRLEEACLFLSRVLDTREIGDIGALT----ELVPEKDGGTDYLPYASIDRLFALSEASLARSKGAPTT-----QKEGRVTAGGLAGAFETAQERLVQYFKVAKAVSDQA 1395          
BLAST of mRNA_H-paniculata_contig285.7768.1 vs. uniprot
Match: D7FXJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ0_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 5.240e-68
Identity = 145/308 (47.08%), Postives = 190/308 (61.69%), Query Frame = 0
Query:    2 LTADGRYEDAADLVLQYWSDRPNVMHDEMAKVIVELSRACVEAEDISQAYARAPSPPLPLVTRGVGPLKPRVPRHGSDAT---------ECGERAASLWLVLRQLLRLDAADSNFSYHKVAAKELLDAAPSTKLPDWLESSFIGKPCSQADDPPSDANAYPPPPPRGSDEPWKAFAPPRGCE-FKGANPTALLNLYVFAGRLEEACLFLSRLLNTEAFEGKSAARNARMEKAPSEMGGSDWLPYASIDRLLALCEASLER--GAPLSSSTADKKQEESRRADLEAALGLAENRLIKYFKIAKSITENA 297
            L   GRYE+AAD+VL+  + +P +M +EM K++  L+RACV  EDI++ Y   P PPL    RGVGPLKPRVP   ++A             E A SLW VLRQLLRLD+AD+NFSYH  A   LL+  P++ LP W+E S++G    +  DPP++ANA+PPP PR    PWKAF   RG     G +PT LL++YV  GRLEEACLFLSR+L+T     +     A  E  P + GG+D+LPYASIDRL AL EASL R  G P +     +K+       L  A   A+ RL+ Y K+AK++++ A
Sbjct: 1499 LALGGRYEEAADVVLEGLAHQPRLMVEEMDKLVSALARACVRTEDIAKGYEVGPLPPL---VRGVGPLKPRVPVPSAEAXXXXXXXXXXRAPEHATSLWPVLRQLLRLDSADNNFSYHTAAVAVLLEGMPASTLPRWVEDSYLGL-GQELPDPPANANAFPPPQPRALLAPWKAFTSGRGGNGASGPDPTKLLDMYVMDGRLEEACLFLSRVLDTR----EVGDIGALTELVPEKDGGTDYLPYASIDRLFALSEASLARSKGPPTT-----QKEGWVTAGGLAGAFETAQERLVGYLKVAKAVSDQA 1793          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig285.7768.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLL3_9PHAE2.630e-6847.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXJ0_ECTSI5.240e-6847.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 262..282
IPR021717Nucleoporin Nup120/160PANTHERPTHR21286NUCLEAR PORE COMPLEX PROTEIN NUP160coord: 1..276

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig285contigH-paniculata_contig285:5304..19237 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig285.7768.1mRNA_H-paniculata_contig285.7768.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig285 3753..19690 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig285.7768.1 ID=prot_H-paniculata_contig285.7768.1|Name=mRNA_H-paniculata_contig285.7768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=318bp
MLTADGRYEDAADLVLQYWSDRPNVMHDEMAKVIVELSRACVEAEDISQA
YARAPSPPLPLVTRGVGPLKPRVPRHGSDATECGERAASLWLVLRQLLRL
DAADSNFSYHKVAAKELLDAAPSTKLPDWLESSFIGKPCSQADDPPSDAN
AYPPPPPRGSDEPWKAFAPPRGCEFKGANPTALLNLYVFAGRLEEACLFL
SRLLNTEAFEGKSAARNARMEKAPSEMGGSDWLPYASIDRLLALCEASLE
RGAPLSSSTADKKQEESRRADLEAALGLAENRLIKYFKIAKSITENATRP
GEEKTEEKATPLMMMTD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021717Nucleoporin_Nup160