mRNA_H-paniculata_contig2840.7751.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2840.7751.1
Unique NamemRNA_H-paniculata_contig2840.7751.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: D8LBR6_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBR6_ECTSI)

HSP 1 Score: 372 bits (955), Expect = 4.210e-120
Identity = 297/433 (68.59%), Postives = 321/433 (74.13%), Query Frame = 1
Query:   31 SNLDSFFKRLGQGQGSSRLWAGPGQRSGAAVPGSLRT-RVHSRTGSSSGXXXXXINTATAESRXXXXXXXXXXXXXXXXXXXXXXXXXXVASTAAGIRRQHTNGAGDLSLSPLGTTGGWSELEGT--------TRNGASGGXXXXXXGIAFANYGRNLRDPLPSXXXXXXXXXXXXXXXXXXXR--RSSTGEHLSPAAATRTTAIEALPSAXXXXXXXXXXXXXXXXXXXXXXGSESASMHSRELVSRPSYRDKRFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
            SNLDSFFKRLGQGQ SSRLWAGPG RSGA VPGSLRT R+  R  S          +  A + XXXXXXXXXXXXXXXXXXXXXXXXXX    A   R +    A DLS  P GT  GWSEL G+         R G  G  XX   G                XXXXXXXXXXXXXXXXXX R   ++TG   + +AAT   A  A       XXXXXXXXXXXXXXXXXX  +++ +  +  L +RPSYRDKRF++VL EEVV++D+LR+LSWNGVPP+HRA VWQLLVGYMPANR RR   LERKRREY EAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQ+KVQRAMERILYIWAIRHPASGYVQGINDL+TPLYVVFLSAHVGPSVES DVSKVDE LL EVEADVYWCLTKLLDNIQ
Sbjct:   20 SNLDSFFKRLGQGQ-SSRLWAGPG-RSGA-VPGSLRTSRLQPRNNSGD-------ISRPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAENDRGRRIGTAEDLS--PFGTRQGWSELTGSGGGGTGGVNRPGGGGSAXXTPFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRPPNATTGSPQTLSAATAIGAGSASTKQQSKXXXXXXXXXXXXXXXXXXAAAQAPAAAAPALATRPSYRDKRFEDVLGEEVVELDELRKLSWNGVPPVHRAAVWQLLVGYMPANRARREAALERKRREYWEAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQDKVQRAMERILYIWAIRHPASGYVQGINDLLTPLYVVFLSAHVGPSVESKDVSKVDEALLDEVEADVYWCLTKLLDNIQ 440          
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: A0A7S1U894_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U894_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.800e-74
Identity = 114/185 (61.62%), Postives = 146/185 (78.92%), Query Frame = 1
Query:  739 RPSYRDKRFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNI 1293
            R SY+D +F E+L+ EVV +++L+ L+WNGVP  HR+ VW+L++GY+P+N  RR   L+RKRREY E+VPQYFD+PD  R+ QEQ++LRQ+LVDVPRT P VP FH E++ R MERILYIWAIRHPASGYVQGIN L+TP ++VFLS  +G +    DV +VD  +L EVEAD YWC+TKLLD I
Sbjct:   18 RMSYKDAQFAELLQAEVVDLERLKSLAWNGVPLGHRSMVWKLILGYLPSNASRRPGTLKRKRREYAESVPQYFDIPDQQRTSQEQDLLRQVLVDVPRTAPGVPLFHNERIHRCMERILYIWAIRHPASGYVQGINGLLTPFFLVFLSGLIGENAAYCDVGRVDAAVLDEVEADTYWCITKLLDAI 202          
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: A0A7S2S4T0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4T0_9STRA)

HSP 1 Score: 236 bits (602), Expect = 5.290e-69
Identity = 117/188 (62.23%), Postives = 149/188 (79.26%), Query Frame = 1
Query:  745 SYRDKRFDEVLRE-EVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHV---GPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
            +YR++RF E+L + EVV +++L++LSW+GVP   R  VWQLL+ Y+P++R RR   L RKR+EY +AVP +FDVP A+R++QEQ +LRQILVDVPRT PDVP FHQ  +QR MER+LYIW+IRHPASGYVQG+NDL TPL+VVFLSA V     SVE+ D +++ +  L  VEAD YWCLTKLLDNIQ
Sbjct:  162 TYRERRFRELLFDSEVVNLEELKKLSWSGVPSKWRPMVWQLLLAYLPSDRKRREATLTRKRKEYADAVPAFFDVPSASRTMQEQKMLRQILVDVPRTSPDVPLFHQAVIQRCMERLLYIWSIRHPASGYVQGMNDLATPLFVVFLSAAVERSSASVEAMDAARLSKEALTNVEADTYWCLTKLLDNIQ 349          
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: A0A836C8P8_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8P8_9STRA)

HSP 1 Score: 224 bits (571), Expect = 9.770e-66
Identity = 118/198 (59.60%), Postives = 137/198 (69.19%), Query Frame = 1
Query:  730 LVSRPSYRDKRFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVP-DAARSLQEQNILRQILVDVPRTCPDVPFFHQ-EKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHV-------GPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
            L SRPS+RD ++ E+L  +VV +  LR+L+WNGVPP +R  VW+LL GYMPANR RRA  L RKRREY EAV  +F    DAARS QEQ +LRQILVD+PRT PD P F +   VQR+M R LY+WA RHPASGYVQGINDL+TP YVVFL  HV                  + E  L E+EAD YWCLTKLLDNIQ
Sbjct:   44 LQSRPSFRDSKYSEILGADVVSLPDLRRLAWNGVPPAYRPTVWKLLCGYMPANRDRRAAALARKRREYAEAVAAHFAAAADAARSAQEQALLRQILVDIPRTAPDAPLFAEVAAVQRSMTRALYVWAQRHPASGYVQGINDLLTPFYVVFLGEHVVGGEGXXXXXXXXXXXXXLPEEALKEIEADAYWCLTKLLDNIQ 241          
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: V9EP87_PHYPR (Rab-GAP TBC domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=V9EP87_PHYPR)

HSP 1 Score: 219 bits (558), Expect = 1.960e-62
Identity = 108/178 (60.67%), Postives = 135/178 (75.84%), Query Frame = 1
Query:  763 FDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
            F+++L +EVV +DQLR+LSW G+P  +R  VW+LL+GYMP+ + RRA +LERKR+EY E + QY+ +PD  R  +EQ  LRQILVD+PRT  DV  F  E++ + MER+LYIWAIRHPASGYVQGINDLMTP  VVFLSA V    +  D+SKV +  L  VEAD YWCLTKLLD+IQ
Sbjct:  191 FEQLLEKEVVDLDQLRKLSWGGIPTNYRPTVWRLLLGYMPSKKDRRAAMLERKRQEYVELLQQYYYIPDTDRGTREQTTLRQILVDIPRTNADVRLFQNERIHQCMERVLYIWAIRHPASGYVQGINDLMTPFLVVFLSAFVDDP-QRCDLSKVSDENLQIVEADSYWCLTKLLDDIQ 367          
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: UPI00142E8F3F (TBC1 domain family member 22B-like isoform X1 n=2 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E8F3F)

HSP 1 Score: 213 bits (541), Expect = 1.100e-61
Identity = 103/179 (57.54%), Postives = 133/179 (74.30%), Query Frame = 1
Query:  760 RFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
            +F++VL +  V ++ LR+L+WNGVP   R DVW+LL+GY P N  RR  VL RKR EY E+V Q++D+PD+ RS  E N+LRQI +D PRT PDV FF Q +VQ+++ERILY WAIRHPASGYVQGINDL+TP  V+FLS ++   VES  +S +    + +VEAD YWCLTKLLD +Q
Sbjct:  152 KFNKVLSDTTVILENLRELAWNGVPHYMRPDVWRLLLGYAPPNSDRREAVLRRKRLEYLESVGQFYDLPDSERSDDEINMLRQIALDCPRTVPDVSFFQQAQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVIFLSEYLEGGVESWSMSDLSSEKISDVEADCYWCLTKLLDGMQ 330          
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: A0A2P6QAN2_ROSCH (Putative Rab-GTPase-TBC domain-containing protein n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6QAN2_ROSCH)

HSP 1 Score: 215 bits (547), Expect = 2.120e-61
Identity = 107/184 (58.15%), Postives = 135/184 (73.37%), Query Frame = 1
Query:  745 SYRDKRFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
            S R  +F +VL    V +++LR+L+W+G+PP  R DVW+LL+GY P+N  RR  VL RKR EY + V QY+D+PD  RS  E N+LRQI VD PRT PDV FF QE+VQ+++ERILY WAIRHPASGYVQGINDL+TP  VVFLS H+  SV+S  +S +    +  VEAD YWCL+KLLD +Q
Sbjct:  130 SARVMKFTKVLSGTTVILEKLRELAWSGIPPYMRPDVWRLLLGYAPSNSDRREGVLRRKRLEYLDCVSQYYDIPDTERSDDEINMLRQIAVDCPRTVPDVSFFQQEQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEHLDGSVDSWSISVLSTDQICIVEADCYWCLSKLLDGMQ 313          
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: A0A3F2RUN4_9STRA (Rab-GAP TBC domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUN4_9STRA)

HSP 1 Score: 216 bits (550), Expect = 2.780e-61
Identity = 107/178 (60.11%), Postives = 135/178 (75.84%), Query Frame = 1
Query:  763 FDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
            F+ +L++EVV +DQLR+LSW GVP  +R  VW+LL+GYMP+ + RRA +LERKR+EY E + QY+ +PD  R  +EQ  LRQILVD+PRT  DV  F  E++ + MER+LYIW+IRHPASGYVQGINDLMTP  VVFLSA V    ++ D+S V +  L  VEAD YWCLTKLLD+IQ
Sbjct:  193 FERLLKKEVVDLDQLRKLSWGGVPTNYRPTVWRLLLGYMPSKQDRRAAMLERKRQEYVELLQQYYYIPDTDRGTREQTTLRQILVDIPRTNADVKLFQNERIHQCMERVLYIWSIRHPASGYVQGINDLMTPFLVVFLSAFVEEP-QTCDLSGVSDENLQIVEADSYWCLTKLLDDIQ 369          
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: A0A397ZV74_BRACM (Rab-GAP TBC domain-containing protein n=3 Tax=Brassica TaxID=3705 RepID=A0A397ZV74_BRACM)

HSP 1 Score: 214 bits (544), Expect = 4.150e-61
Identity = 103/179 (57.54%), Postives = 135/179 (75.42%), Query Frame = 1
Query:  760 RFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
            +F++VL +  V +++LR+L+WNGVP   R DVW+LL+GY P N  RR  VL RKR EY E+V Q++D+PD+ RS  E N+LRQI +D PRT PDV FF Q +VQ+++ERILY WAIRHPASGYVQGINDL+TP  V+FLS ++   VES  +S++    + +VEAD YWCLTKLLD +Q
Sbjct:  122 KFNKVLSDTTVILEKLRELAWNGVPHYMRPDVWRLLLGYAPPNSDRREAVLRRKRLEYLESVGQFYDLPDSERSDDEINMLRQIALDCPRTVPDVSFFQQAQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVIFLSEYLEGGVESWSMSELSSEKISDVEADCYWCLTKLLDGMQ 300          
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: UPI00053C5C27 (GTPase-activating protein GYP1 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C5C27)

HSP 1 Score: 214 bits (544), Expect = 4.360e-61
Identity = 106/184 (57.61%), Postives = 136/184 (73.91%), Query Frame = 1
Query:  745 SYRDKRFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
            S R  +F++VL    V +++LR+L+WNGVP   R DVW+LL+GY P N  RR  VL RKR EY E V Q++D+PD+ RS  E N+LRQI VD PRT PDV FF Q+KVQ+++ERILY WAIRHPASGYVQGINDL+TP  V+FLS ++  SV+S  +S +    + +VEAD YWCL+KLLD +Q
Sbjct:  119 SARITKFNKVLSATSVILEKLRELAWNGVPHYMRPDVWRLLLGYAPPNSDRREAVLRRKRLEYLECVAQFYDIPDSERSNDEINMLRQIAVDCPRTVPDVCFFQQDKVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVIFLSEYLEGSVDSWSMSDLSTDKISDVEADCYWCLSKLLDGMQ 302          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBR6_ECTSI4.210e-12068.59Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
A0A7S1U894_9STRA2.800e-7461.62Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2S4T0_9STRA5.290e-6962.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836C8P8_9STRA9.770e-6659.60Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
V9EP87_PHYPR1.960e-6260.67Rab-GAP TBC domain-containing protein n=17 Tax=Phy... [more]
UPI00142E8F3F1.100e-6157.54TBC1 domain family member 22B-like isoform X1 n=2 ... [more]
A0A2P6QAN2_ROSCH2.120e-6158.15Putative Rab-GTPase-TBC domain-containing protein ... [more]
A0A3F2RUN4_9STRA2.780e-6160.11Rab-GAP TBC domain-containing protein n=3 Tax=Phyt... [more]
A0A397ZV74_BRACM4.150e-6157.54Rab-GAP TBC domain-containing protein n=3 Tax=Bras... [more]
UPI00053C5C274.360e-6157.61GTPase-activating protein GYP1 n=1 Tax=Tarenaya ha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2840contigH-paniculata_contig2840:17063..19584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score379.4
Seed ortholog evalue2.2e-102
Seed eggNOG ortholog2880.D8LBR6
Preferred nameTBC1D22B
KEGG rclassRC00001,RC00003,RC00066,RC00466
KEGG koko:K00036,ko:K14589,ko:K20360
KEGG ReactionR00835,R02736,R03922,R10907
KEGG Pathwayko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230
KEGG ModuleM00004,M00006,M00008
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005794,GO:0006810,GO:0006886,GO:0008047,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0030234,GO:0030695,GO:0031267,GO:0031338,GO:0032879,GO:0033036,GO:0033043,GO:0034613,GO:0042802,GO:0042803,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046907,GO:0046983,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060589,GO:0060627,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071889,GO:0090630,GO:0098772
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsKOG1092@1,KOG1092@2759
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-27_002980.1
EC1.1.1.363,1.1.1.49,2.1.1.57
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko04131,ko04147
Exons5
Model size1296
Cds size1296
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2840.7751.1prot_H-paniculata_contig2840.7751.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2840 17063..19584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929862.5052562-CDS-H-paniculata_contig2840:17062..173601622929862.5052562-CDS-H-paniculata_contig2840:17062..17360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2840 17063..17360 +
1691481044.5011303-CDS-H-paniculata_contig2840:17062..173601691481044.5011303-CDS-H-paniculata_contig2840:17062..17360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2840 17063..17360 +
1622929862.5217223-CDS-H-paniculata_contig2840:17790..178921622929862.5217223-CDS-H-paniculata_contig2840:17790..17892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2840 17791..17892 +
1691481044.5280423-CDS-H-paniculata_contig2840:17790..178921691481044.5280423-CDS-H-paniculata_contig2840:17790..17892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2840 17791..17892 +
1622929862.5378616-CDS-H-paniculata_contig2840:18036..187011622929862.5378616-CDS-H-paniculata_contig2840:18036..18701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2840 18037..18701 +
1691481044.5378642-CDS-H-paniculata_contig2840:18036..187011691481044.5378642-CDS-H-paniculata_contig2840:18036..18701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2840 18037..18701 +
1622929862.5521557-CDS-H-paniculata_contig2840:19176..193001622929862.5521557-CDS-H-paniculata_contig2840:19176..19300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2840 19177..19300 +
1691481044.5476003-CDS-H-paniculata_contig2840:19176..193001691481044.5476003-CDS-H-paniculata_contig2840:19176..19300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2840 19177..19300 +
1622929862.564116-CDS-H-paniculata_contig2840:19477..195841622929862.564116-CDS-H-paniculata_contig2840:19477..19584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2840 19478..19584 +
1691481044.5591047-CDS-H-paniculata_contig2840:19477..195841691481044.5591047-CDS-H-paniculata_contig2840:19477..19584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2840 19478..19584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2840.7751.1

>prot_H-paniculata_contig2840.7751.1 ID=prot_H-paniculata_contig2840.7751.1|Name=mRNA_H-paniculata_contig2840.7751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=432bp
QPQQPPSSNNSNLDSFFKRLGQGQGSSRLWAGPGQRSGAAVPGSLRTRVH
SRTGSSSGSSTSAINTATAESRQGRMQQQQQQQQQQQQQQQQGSQASAVA
STAAGIRRQHTNGAGDLSLSPLGTTGGWSELEGTTRNGASGGGGGSGDGI
AFANYGRNLRDPLPSSPSPSPVPPSPPPPPPPPPRRSSTGEHLSPAAATR
TTAIEALPSAAAAAATLTRLPAPKPSSSPRPKGSESASMHSRELVSRPSY
RDKRFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRR
AVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPF
FHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSV
ESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ
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mRNA from alignment at H-paniculata_contig2840:17063..19584+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2840.7751.1 ID=mRNA_H-paniculata_contig2840.7751.1|Name=mRNA_H-paniculata_contig2840.7751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2522bp|location=Sequence derived from alignment at H-paniculata_contig2840:17063..19584+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCACAGCAGCCTCCATCCTCTAATAACTCCAACCTGGACAGCTTTTT CAAGCGTCTTGGGCAGGGACAGGGCTCCAGTAGGTTATGGGCAGGACCCG GACAGCGCTCGGGCGCGGCGGTGCCTGGGTCCTTAAGGACGCGTGTCCAC TCGCGGACAGGCAGTAGCAGTGGCAGTAGCACTAGCGCTATTAATACAGC AACTGCGGAGAGTCGGCAAGGACGAATGCAGCAGCAGCAGCAGCAACAAC AACAACAACAACAACAACAACAACAAGGGTCGCAGGCATCTGCTGTTGGT AAGCAAAATGAGCCATCGCCCGGAGAGAGACCTCGATTTCCGTGTATTTT GCGGGGTGATGATTTTCGGTTGCACGACGTAGGCGCGCAAATCGACGGCG TCCTTCTACATTAGTCATATTGTGGTGCCAACATGCGCAGACAATGCACG TCTTGACTGCTCCCGCAAGGAAAAGCTGCAGTGCACAAGCATTGAAAGCA GGCAGACGTGCGGCGGGTGGGCGGGCGGGCGTACACACCATTTTGTTGAG CGGACTCGGTGAGCGCAACATCTGTCCATAGAAACATGTCCAATAAGCTG TATTCGCCGCATTTTCCCAACCTGGGCCTGCCACCCCTCCCTCGCCCATG TCCTTCTTGACCAATACAACATGCTTCCTTTCTAACCTTCGGCTCGCTTA CTCCGGCACTCCACACGCGTGCATACAGCCTCAACAGCGGCCGGCATCCG CAGGCAACACACCAATGGTGCGGGTGACCTGTCTCTCTCACCTCTTGGGA CGACAGGCGGTTGGAGCGAACTGGAGGGCAGTCGAAGATCATCACTCGGG GACGACGACCGAGGTGACGGCAACAGCACCAACAACAGAGTTAAAAGGTC GTCTAGCTTTCGTGCAGTAGGTTCACGTCCCTCCCCGGCAACATCCTCAC CCGCAAGATATCGCGTAGTAATAGCAACTAGAAACGGGGCGAGTGGCGGC GGGGGCGGCAGCGGTGACGGCATTGCCTTTGCAAATTACGGACGTAATCT GCGGGACCCACTACCATCTTCGCCGTCCCCGTCGCCAGTACCGCCGTCGC CGCCGCCGCCGCCGCCGCCGCCTCCGCGGCGCTCGTCGACCGGAGAACAC TTATCACCTGCGGCAGCAACACGAACAACAGCAATTGAAGCGTTGCCGTC CGCGGCCGCCGCCGCCGCAACCTTGACACGATTACCAGCGCCCAAACCAT CGTCGTCGCCTCGTCCAAAAGGCTCAGAGTCGGCGTCCATGCACTCGCGA GAGCTCGTCTCGCGCCCGAGTTACCGAGATAAGCGGTTCGACGAGGTGTT GCGGGAGGAGGTAGTAAAGATTGACCAGCTACGACAGCTCAGCTGGAACG GCGTGCCACCGATTCACCGGGCCGATGTGTGGCAGTTGCTGGTGGGGTAC ATGCCGGCGAATCGGGGCCGGCGTGCGGTGGTGCTCGAGCGCAAGCGGAG GGAGTACCGAGAGGCGGTGCCGCAGTACTTCGATGTGCCCGACGCTGCGC GGAGTCTTCAAGAGCAAAATATTTTGAGGCAGATTTTGGTGGATGTGCCA CGGACGTGCCCCGACGTCCCCTTCTTTCATCAGGAGAAGGTGATGTGATA TCGTATCGTTTCGTTGTGTCTGGCGATTATTCTGTGCTTTTGAGCACTTT GTTTTGTTTTCTCATGCAGTGGGGAAAAGCCATGTGGGTATGTATGAGCC GCCGGAGTTTGGTAGATGTGTACTGGCGGAGGACAATAGACGCTCCTCTC TTTGTCCGTCTGCCTGTCTCTTTCGCTCAGGTGGCGTCGTCGATGCCTCG CGACTCTCGCGGTGGCGTGTTGTTAGGGCGTGTGGTCATGGTCGTTGGCG TGTGGTTATTGTTCCTGTTGGTTGATGCGAACGGAAGTTAGTATCTTCTT CCGCGGAGAAGCAGGGGAACTGCGGATGCGAGATACGTATGAGTTTTTTT GTGAGCTATTTTTGAGGTACCGTTGCTGCTATCCTCCTGCATCAGCAAAA CGTGACCATGACTGCCTCTGCTGCTGTGTTTTCCTTTTCTTTATATTTGT ATTTGTGTATTCAGGTGCAACGGGCGATGGAGCGGATACTGTACATATGG GCAATCCGGCACCCTGCCAGCGGGTATGTGCAGGGCATCAATGACCTCAT GACGCCCCTTTACGTCGTGTTCCTGTCGGCACACGTGGGTGAGTGCTTGC TTCGCCTGACCGGCGGGCCGGCACGTTGCCCTCGTTGAAGAATATTTTGT TTTGCTGATGAAACATGCAATTTTGTGCAACGTTTGGCGTGCACGCCGCC AGTCCAAAGGTATAACAAACGTGTACAAATCGCATAAACTTTGACTTTTT TTTTTTTCGATTTAGGACCGTCCGTTGAGTCGACCGACGTGAGCAAGGTG GACGAGGTGCTGCTGCACGAGGTGGAAGCAGACGTCTATTGGTGCCTGAC CAAGCTCCTAGACAACATCCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2840:17063..19584+

>mRNA_H-paniculata_contig2840.7751.1 ID=mRNA_H-paniculata_contig2840.7751.1|Name=mRNA_H-paniculata_contig2840.7751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2592bp|location=Sequence derived from alignment at H-paniculata_contig2840:17063..19584+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCACAGCAGCCTCCATCCTCTAATAACTCCAACCTGGACAGCTTTTT
CAAGCGTCTTGGGCAGGGACAGGGCTCCAGTAGGTTATGGGCAGGACCCG
GACAGCGCTCGGGCGCGGCGGTGCCTGGGTCCTTAAGGACGCGTGTCCAC
TCGCGGACAGGCAGTAGCAGTGGCAGTAGCACTAGCGCTATTAATACAGC
AACTGCGGAGAGTCGGCAAGGACGAATGCAGCAGCAGCAGCAGCAACAAC
AACAACAACAACAACAACAACAACAAGGGTCGCAGGCATCTGCTGTTGCA
GCCACAGCAGCCTCCATCCTCTAATAACTCCAACCTGGACAGCTTTTTCA
AGCGTCTTGGGCAGGGACAGGGCTCCAGTAGGTTATGGGCAGGACCCGGA
CAGCGCTCGGGCGCGGCGGTGCCTGGGTCCTTAAGGACGCGTGTCCACTC
GCGGACAGGCAGTAGCAGTGGCAGTAGCACTAGCGCTATTAATACAGCAA
CTGCGGAGAGTCGGCAAGGACGAATGCAGCAGCAGCAGCAGCAACAACAA
CAACAACAACAACAACAACAACAAGGGTCGCAGGCATCTGCTGTTGCCTC
AACAGCGGCCGGCATCCGCAGGCAACACACCAATGGTGCGGGTGACCTGT
CTCTCTCACCTCTTGGGACGACAGGCGGTTGGAGCGAACTGGAGGGCACC
TCAACAGCGGCCGGCATCCGCAGGCAACACACCAATGGTGCGGGTGACCT
GTCTCTCTCACCTCTTGGGACGACAGGCGGTTGGAGCGAACTGGAGGGCA
CAACTAGAAACGGGGCGAGTGGCGGCGGGGGCGGCAGCGGTGACGGCATT
GCCTTTGCAAATTACGGACGTAATCTGCGGGACCCACTACCATCTTCGCC
GTCCCCGTCGCCAGTACCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCTC
CGCGGCGCTCGTCGACCGGAGAACACTTATCACCTGCGGCAGCAACACGA
ACAACAGCAATTGAAGCGTTGCCGTCCGCGGCCGCCGCCGCCGCAACCTT
GACACGATTACCAGCGCCCAAACCATCGTCGTCGCCTCGTCCAAAAGGCT
CAGAGTCGGCGTCCATGCACTCGCGAGAGCTCGTCTCGCGCCCGAGTTAC
CGAGATAAGCGGTTCGACGAGGTGTTGCGGGAGGAGGTAGTAAAGATTGA
CCAGCTACGACAGCTCAGCTGGAACGGCGTGCCACCGATTCACCGGGCCG
ATGTGTGGCAGTTGCTGGTGGGGTACATGCCGGCGAATCGGGGCCGGCGT
GCGGTGGTGCTCGAGCGCAAGCGGAGGGAGTACCGAGAGGCGGTGCCGCA
GTACTTCGATGTGCCCGACGCTGCGCGGAGTCTTCAAGAGCAAAATATTT
TGAGGCAGATTTTGGTGGATGTGCCACGGACGTGCCCCGACGTCCCCTTC
TTTCATCAGGAGAAGCAACTAGAAACGGGGCGAGTGGCGGCGGGGGCGGC
AGCGGTGACGGCATTGCCTTTGCAAATTACGGACGTAATCTGCGGGACCC
ACTACCATCTTCGCCGTCCCCGTCGCCAGTACCGCCGTCGCCGCCGCCGC
CGCCGCCGCCGCCTCCGCGGCGCTCGTCGACCGGAGAACACTTATCACCT
GCGGCAGCAACACGAACAACAGCAATTGAAGCGTTGCCGTCCGCGGCCGC
CGCCGCCGCAACCTTGACACGATTACCAGCGCCCAAACCATCGTCGTCGC
CTCGTCCAAAAGGCTCAGAGTCGGCGTCCATGCACTCGCGAGAGCTCGTC
TCGCGCCCGAGTTACCGAGATAAGCGGTTCGACGAGGTGTTGCGGGAGGA
GGTAGTAAAGATTGACCAGCTACGACAGCTCAGCTGGAACGGCGTGCCAC
CGATTCACCGGGCCGATGTGTGGCAGTTGCTGGTGGGGTACATGCCGGCG
AATCGGGGCCGGCGTGCGGTGGTGCTCGAGCGCAAGCGGAGGGAGTACCG
AGAGGCGGTGCCGCAGTACTTCGATGTGCCCGACGCTGCGCGGAGTCTTC
AAGAGCAAAATATTTTGAGGCAGATTTTGGTGGATGTGCCACGGACGTGC
CCCGACGTCCCCTTCTTTCATCAGGAGAAGGTGCAACGGGCGATGGAGCG
GATACTGTACATATGGGCAATCCGGCACCCTGCCAGCGGGTATGTGCAGG
GCATCAATGACCTCATGACGCCCCTTTACGTCGTGTTCCTGTCGGCACAC
GTGGGTGCAACGGGCGATGGAGCGGATACTGTACATATGGGCAATCCGGC
ACCCTGCCAGCGGGTATGTGCAGGGCATCAATGACCTCATGACGCCCCTT
TACGTCGTGTTCCTGTCGGCACACGTGGGACCGTCCGTTGAGTCGACCGA
CGTGAGCAAGGTGGACGAGGTGCTGCTGCACGAGGTGGAAGCAGACGTCT
ATTGGTGCCTGACCAAGCTCCTAGACAACATCCAGGACCGTCCGTTGAGT
CGACCGACGTGAGCAAGGTGGACGAGGTGCTGCTGCACGAGGTGGAAGCA
GACGTCTATTGGTGCCTGACCAAGCTCCTAGACAACATCCAG
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