mRNA_H-paniculata_contig2840.7751.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: D8LBR6_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBR6_ECTSI) HSP 1 Score: 372 bits (955), Expect = 4.210e-120 Identity = 297/433 (68.59%), Postives = 321/433 (74.13%), Query Frame = 1
Query: 31 SNLDSFFKRLGQGQGSSRLWAGPGQRSGAAVPGSLRT-RVHSRTGSSSGXXXXXINTATAESRXXXXXXXXXXXXXXXXXXXXXXXXXXVASTAAGIRRQHTNGAGDLSLSPLGTTGGWSELEGT--------TRNGASGGXXXXXXGIAFANYGRNLRDPLPSXXXXXXXXXXXXXXXXXXXR--RSSTGEHLSPAAATRTTAIEALPSAXXXXXXXXXXXXXXXXXXXXXXGSESASMHSRELVSRPSYRDKRFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
SNLDSFFKRLGQGQ SSRLWAGPG RSGA VPGSLRT R+ R S + A + XXXXXXXXXXXXXXXXXXXXXXXXXX A R + A DLS P GT GWSEL G+ R G G XX G XXXXXXXXXXXXXXXXXX R ++TG + +AAT A A XXXXXXXXXXXXXXXXXX +++ + + L +RPSYRDKRF++VL EEVV++D+LR+LSWNGVPP+HRA VWQLLVGYMPANR RR LERKRREY EAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQ+KVQRAMERILYIWAIRHPASGYVQGINDL+TPLYVVFLSAHVGPSVES DVSKVDE LL EVEADVYWCLTKLLDNIQ
Sbjct: 20 SNLDSFFKRLGQGQ-SSRLWAGPG-RSGA-VPGSLRTSRLQPRNNSGD-------ISRPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAENDRGRRIGTAEDLS--PFGTRQGWSELTGSGGGGTGGVNRPGGGGSAXXTPFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRPPNATTGSPQTLSAATAIGAGSASTKQQSKXXXXXXXXXXXXXXXXXXAAAQAPAAAAPALATRPSYRDKRFEDVLGEEVVELDELRKLSWNGVPPVHRAAVWQLLVGYMPANRARREAALERKRREYWEAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQDKVQRAMERILYIWAIRHPASGYVQGINDLLTPLYVVFLSAHVGPSVESKDVSKVDEALLDEVEADVYWCLTKLLDNIQ 440
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: A0A7S1U894_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U894_9STRA) HSP 1 Score: 245 bits (625), Expect = 2.800e-74 Identity = 114/185 (61.62%), Postives = 146/185 (78.92%), Query Frame = 1
Query: 739 RPSYRDKRFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNI 1293
R SY+D +F E+L+ EVV +++L+ L+WNGVP HR+ VW+L++GY+P+N RR L+RKRREY E+VPQYFD+PD R+ QEQ++LRQ+LVDVPRT P VP FH E++ R MERILYIWAIRHPASGYVQGIN L+TP ++VFLS +G + DV +VD +L EVEAD YWC+TKLLD I
Sbjct: 18 RMSYKDAQFAELLQAEVVDLERLKSLAWNGVPLGHRSMVWKLILGYLPSNASRRPGTLKRKRREYAESVPQYFDIPDQQRTSQEQDLLRQVLVDVPRTAPGVPLFHNERIHRCMERILYIWAIRHPASGYVQGINGLLTPFFLVFLSGLIGENAAYCDVGRVDAAVLDEVEADTYWCITKLLDAI 202
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: A0A7S2S4T0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4T0_9STRA) HSP 1 Score: 236 bits (602), Expect = 5.290e-69 Identity = 117/188 (62.23%), Postives = 149/188 (79.26%), Query Frame = 1
Query: 745 SYRDKRFDEVLRE-EVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHV---GPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
+YR++RF E+L + EVV +++L++LSW+GVP R VWQLL+ Y+P++R RR L RKR+EY +AVP +FDVP A+R++QEQ +LRQILVDVPRT PDVP FHQ +QR MER+LYIW+IRHPASGYVQG+NDL TPL+VVFLSA V SVE+ D +++ + L VEAD YWCLTKLLDNIQ
Sbjct: 162 TYRERRFRELLFDSEVVNLEELKKLSWSGVPSKWRPMVWQLLLAYLPSDRKRREATLTRKRKEYADAVPAFFDVPSASRTMQEQKMLRQILVDVPRTSPDVPLFHQAVIQRCMERLLYIWSIRHPASGYVQGMNDLATPLFVVFLSAAVERSSASVEAMDAARLSKEALTNVEADTYWCLTKLLDNIQ 349
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: A0A836C8P8_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8P8_9STRA) HSP 1 Score: 224 bits (571), Expect = 9.770e-66 Identity = 118/198 (59.60%), Postives = 137/198 (69.19%), Query Frame = 1
Query: 730 LVSRPSYRDKRFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVP-DAARSLQEQNILRQILVDVPRTCPDVPFFHQ-EKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHV-------GPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
L SRPS+RD ++ E+L +VV + LR+L+WNGVPP +R VW+LL GYMPANR RRA L RKRREY EAV +F DAARS QEQ +LRQILVD+PRT PD P F + VQR+M R LY+WA RHPASGYVQGINDL+TP YVVFL HV + E L E+EAD YWCLTKLLDNIQ
Sbjct: 44 LQSRPSFRDSKYSEILGADVVSLPDLRRLAWNGVPPAYRPTVWKLLCGYMPANRDRRAAALARKRREYAEAVAAHFAAAADAARSAQEQALLRQILVDIPRTAPDAPLFAEVAAVQRSMTRALYVWAQRHPASGYVQGINDLLTPFYVVFLGEHVVGGEGXXXXXXXXXXXXXLPEEALKEIEADAYWCLTKLLDNIQ 241
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: V9EP87_PHYPR (Rab-GAP TBC domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=V9EP87_PHYPR) HSP 1 Score: 219 bits (558), Expect = 1.960e-62 Identity = 108/178 (60.67%), Postives = 135/178 (75.84%), Query Frame = 1
Query: 763 FDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
F+++L +EVV +DQLR+LSW G+P +R VW+LL+GYMP+ + RRA +LERKR+EY E + QY+ +PD R +EQ LRQILVD+PRT DV F E++ + MER+LYIWAIRHPASGYVQGINDLMTP VVFLSA V + D+SKV + L VEAD YWCLTKLLD+IQ
Sbjct: 191 FEQLLEKEVVDLDQLRKLSWGGIPTNYRPTVWRLLLGYMPSKKDRRAAMLERKRQEYVELLQQYYYIPDTDRGTREQTTLRQILVDIPRTNADVRLFQNERIHQCMERVLYIWAIRHPASGYVQGINDLMTPFLVVFLSAFVDDP-QRCDLSKVSDENLQIVEADSYWCLTKLLDDIQ 367
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: UPI00142E8F3F (TBC1 domain family member 22B-like isoform X1 n=2 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E8F3F) HSP 1 Score: 213 bits (541), Expect = 1.100e-61 Identity = 103/179 (57.54%), Postives = 133/179 (74.30%), Query Frame = 1
Query: 760 RFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
+F++VL + V ++ LR+L+WNGVP R DVW+LL+GY P N RR VL RKR EY E+V Q++D+PD+ RS E N+LRQI +D PRT PDV FF Q +VQ+++ERILY WAIRHPASGYVQGINDL+TP V+FLS ++ VES +S + + +VEAD YWCLTKLLD +Q
Sbjct: 152 KFNKVLSDTTVILENLRELAWNGVPHYMRPDVWRLLLGYAPPNSDRREAVLRRKRLEYLESVGQFYDLPDSERSDDEINMLRQIALDCPRTVPDVSFFQQAQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVIFLSEYLEGGVESWSMSDLSSEKISDVEADCYWCLTKLLDGMQ 330
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: A0A2P6QAN2_ROSCH (Putative Rab-GTPase-TBC domain-containing protein n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6QAN2_ROSCH) HSP 1 Score: 215 bits (547), Expect = 2.120e-61 Identity = 107/184 (58.15%), Postives = 135/184 (73.37%), Query Frame = 1
Query: 745 SYRDKRFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
S R +F +VL V +++LR+L+W+G+PP R DVW+LL+GY P+N RR VL RKR EY + V QY+D+PD RS E N+LRQI VD PRT PDV FF QE+VQ+++ERILY WAIRHPASGYVQGINDL+TP VVFLS H+ SV+S +S + + VEAD YWCL+KLLD +Q
Sbjct: 130 SARVMKFTKVLSGTTVILEKLRELAWSGIPPYMRPDVWRLLLGYAPSNSDRREGVLRRKRLEYLDCVSQYYDIPDTERSDDEINMLRQIAVDCPRTVPDVSFFQQEQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEHLDGSVDSWSISVLSTDQICIVEADCYWCLSKLLDGMQ 313
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: A0A3F2RUN4_9STRA (Rab-GAP TBC domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUN4_9STRA) HSP 1 Score: 216 bits (550), Expect = 2.780e-61 Identity = 107/178 (60.11%), Postives = 135/178 (75.84%), Query Frame = 1
Query: 763 FDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
F+ +L++EVV +DQLR+LSW GVP +R VW+LL+GYMP+ + RRA +LERKR+EY E + QY+ +PD R +EQ LRQILVD+PRT DV F E++ + MER+LYIW+IRHPASGYVQGINDLMTP VVFLSA V ++ D+S V + L VEAD YWCLTKLLD+IQ
Sbjct: 193 FERLLKKEVVDLDQLRKLSWGGVPTNYRPTVWRLLLGYMPSKQDRRAAMLERKRQEYVELLQQYYYIPDTDRGTREQTTLRQILVDIPRTNADVKLFQNERIHQCMERVLYIWSIRHPASGYVQGINDLMTPFLVVFLSAFVEEP-QTCDLSGVSDENLQIVEADSYWCLTKLLDDIQ 369
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: A0A397ZV74_BRACM (Rab-GAP TBC domain-containing protein n=3 Tax=Brassica TaxID=3705 RepID=A0A397ZV74_BRACM) HSP 1 Score: 214 bits (544), Expect = 4.150e-61 Identity = 103/179 (57.54%), Postives = 135/179 (75.42%), Query Frame = 1
Query: 760 RFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
+F++VL + V +++LR+L+WNGVP R DVW+LL+GY P N RR VL RKR EY E+V Q++D+PD+ RS E N+LRQI +D PRT PDV FF Q +VQ+++ERILY WAIRHPASGYVQGINDL+TP V+FLS ++ VES +S++ + +VEAD YWCLTKLLD +Q
Sbjct: 122 KFNKVLSDTTVILEKLRELAWNGVPHYMRPDVWRLLLGYAPPNSDRREAVLRRKRLEYLESVGQFYDLPDSERSDDEINMLRQIALDCPRTVPDVSFFQQAQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVIFLSEYLEGGVESWSMSELSSEKISDVEADCYWCLTKLLDGMQ 300
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Match: UPI00053C5C27 (GTPase-activating protein GYP1 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C5C27) HSP 1 Score: 214 bits (544), Expect = 4.360e-61 Identity = 106/184 (57.61%), Postives = 136/184 (73.91%), Query Frame = 1
Query: 745 SYRDKRFDEVLREEVVKIDQLRQLSWNGVPPIHRADVWQLLVGYMPANRGRRAVVLERKRREYREAVPQYFDVPDAARSLQEQNILRQILVDVPRTCPDVPFFHQEKVQRAMERILYIWAIRHPASGYVQGINDLMTPLYVVFLSAHVGPSVESTDVSKVDEVLLHEVEADVYWCLTKLLDNIQ 1296
S R +F++VL V +++LR+L+WNGVP R DVW+LL+GY P N RR VL RKR EY E V Q++D+PD+ RS E N+LRQI VD PRT PDV FF Q+KVQ+++ERILY WAIRHPASGYVQGINDL+TP V+FLS ++ SV+S +S + + +VEAD YWCL+KLLD +Q
Sbjct: 119 SARITKFNKVLSATSVILEKLRELAWNGVPHYMRPDVWRLLLGYAPPNSDRREAVLRRKRLEYLECVAQFYDIPDSERSNDEINMLRQIAVDCPRTVPDVCFFQQDKVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVIFLSEYLEGSVDSWSMSDLSTDKISDVEADCYWCLSKLLDGMQ 302 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2840.7751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2840.7751.1 >prot_H-paniculata_contig2840.7751.1 ID=prot_H-paniculata_contig2840.7751.1|Name=mRNA_H-paniculata_contig2840.7751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=432bp QPQQPPSSNNSNLDSFFKRLGQGQGSSRLWAGPGQRSGAAVPGSLRTRVHback to top mRNA from alignment at H-paniculata_contig2840:17063..19584+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2840.7751.1 ID=mRNA_H-paniculata_contig2840.7751.1|Name=mRNA_H-paniculata_contig2840.7751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2522bp|location=Sequence derived from alignment at H-paniculata_contig2840:17063..19584+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2840:17063..19584+ >mRNA_H-paniculata_contig2840.7751.1 ID=mRNA_H-paniculata_contig2840.7751.1|Name=mRNA_H-paniculata_contig2840.7751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2592bp|location=Sequence derived from alignment at H-paniculata_contig2840:17063..19584+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |