prot_H-paniculata_contig1122.774.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1122.774.1
Unique Nameprot_H-paniculata_contig1122.774.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length173
Homology
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 85.5 bits (210), Expect = 3.520e-16
Identity = 54/141 (38.30%), Postives = 78/141 (55.32%), Query Frame = 0
Query:    1 MKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRR--RANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITF 139
            +KDLG    +LG+EV+RD   GTISISQ  YI +VLKRYG + C+ V T P +P          G   +ES+S+R  +   I Y+ ++GSLMY+  GTR D  +A++  +   +       S  KR+  YL    +  IT+
Sbjct: 1053 LKDLGEPKYILGLEVKRDKTQGTISISQKKYIGEVLKRYGMENCKPVST-PIEP----------GLTQEESTSQREEQLQGIPYQSLIGSLMYLVQGTRPDIAFAVNYLSEFNKSFTSRHWSMAKRVLRYLQGTREACITY 1182          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A4Y2FQW3_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2FQW3_ARAVE)

HSP 1 Score: 79.7 bits (195), Expect = 1.390e-15
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 0
Query:    4 LGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITF 139
            +G +SC LG+E+ R H +G+I ISQ  Y RK+L+R+GF+GC+  P S P               ++ES  ++  ++      +GSLMY+   TR D  Y++   +  +E P  E     KR+F Y++   ++ IT+
Sbjct:   16 IGEVSCFLGLEIER-HKDGSIEISQKAYARKILQRFGFEGCK--PASTPM--------------LKESRFQKPEDNKRQEFAIGSLMYLMVDTRPDITYSVGYISRSLESPTAEYVVRVKRVFRYIAGTTNVAITY 134          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A1J3CVC5_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CVC5_NOCCA)

HSP 1 Score: 82.4 bits (202), Expect = 4.160e-15
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 0
Query:    1 MKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRR-ANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITF 139
            MKDLG    +LG+E+ RD   GT++ISQ GY++KVL  +G D  + V T+      +GA    + A   E   +R     I Y+  +GSLMY   GTR D  Y++      M +P +E     K I  YL+   ++ +++
Sbjct: 1076 MKDLGEAKKILGMEITRDRVKGTLTISQEGYVKKVLGNFGMDQSKSVSTA------MGAHFRFMAATEDELQDQREDMEKIPYQSAVGSLMYSMIGTRPDLAYSVGLVCRFMSNPIKEHWLGVKWILRYLNGTTEMKLSY 1209          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A6D2JQ19_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JQ19_9BRAS)

HSP 1 Score: 80.9 bits (198), Expect = 8.910e-15
Identity = 46/131 (35.11%), Postives = 69/131 (52.67%), Query Frame = 0
Query:    1 MKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRA-NSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLS 130
            MKDLG    +LG+E+ RD   G +++SQ GY+ KVL  +G D  +   T      PLGA      A  ++S  +R +  ++ Y+  +GSLMY   GTR D  YA+      M DP ++  +  K I  Y++
Sbjct:   98 MKDLGEAKKILGMEITRDRSKGILTVSQEGYLTKVLGNFGMDQNKATGT------PLGAHFKLQAATEKQSQDQRESMKNVPYQSAVGSLMYAMIGTRPDLAYAVGLVCRFMSDPIKDHWAAVKWIMRYVN 222          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A6N2NJF6_SALVM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2NJF6_SALVM)

HSP 1 Score: 80.9 bits (198), Expect = 1.350e-14
Identity = 51/153 (33.33%), Postives = 74/153 (48.37%), Query Frame = 0
Query:    1 MKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITF--GDRVMVTVWKDS 151
            MKD+G  S V+G+E+ RD   G +S+SQ GYI KVLKRYG D C    +    P   G   S +     E   R+    I Y  ++GSL YV T TR D  +A+        +P  +     K++  YL    +  +T+   D + +  + DS
Sbjct:  446 MKDMGEASYVIGIEIIRDRSQGLLSLSQKGYIDKVLKRYGMDKC----SIGKAPIQKGDQFSKMQCPKNELE-RKEMERISYASVVGSLNYVQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKEYMLTYRRSDNIEIVGYSDS 593          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A6N2MJZ2_SALVM (Uncharacterized protein n=6 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2MJZ2_SALVM)

HSP 1 Score: 80.5 bits (197), Expect = 1.940e-14
Identity = 51/153 (33.33%), Postives = 74/153 (48.37%), Query Frame = 0
Query:    1 MKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITF--GDRVMVTVWKDS 151
            MKD+G  S V+G+E+ RD   G +S+SQ GYI KVLKRYG D C    +    P   G   S +     E   R+    I Y  ++GSL YV T TR D  +A+        +P  +     K++  YL    +  +T+   D + +  + DS
Sbjct:  997 MKDMGEASYVIGIEIIRDRSQGLLSLSQKGYIDKVLKRYGMDKC----SIGKAPIQKGDQFSKMQCPKNELE-RKEMERIPYASVVGSLNYVQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKEYMLTYRRSDNIEIVGYSDS 1144          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.680e-14
Identity = 45/139 (32.37%), Postives = 72/139 (51.80%), Query Frame = 0
Query:    1 MKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITF 139
            M D+G +  VLG+E++RDH  GT++ISQ  Y + +L+R+G   C+  PTS P         S++     E +      +  Y+G++G LMY++   R D +YA  Q A  ME P +      K    Y++   +  IT+
Sbjct:  236 MTDMGEVKLVLGMEIKRDHNQGTLTISQKAYTKSILERFGMSECK--PTSTP------GYGSELSNKQPEDTLLGEEETRRYQGIVGCLMYIAQVLRYDIMYATGQLARPMEKPSKIHMVAAKHTLRYVAGTTNFRITY 366          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: UPI00142E19AD (uncharacterized protein LOC103874474 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E19AD)

HSP 1 Score: 79.7 bits (195), Expect = 3.590e-14
Identity = 46/139 (33.09%), Postives = 68/139 (48.92%), Query Frame = 0
Query:    1 MKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITF 139
            MKD+GP S +LG++++RD    T+ + Q GYI+KVLKR+     + V T      P+G+      A V+ +  R     + Y   +GS+MY   GTR D  YAL   +  M  P        K +  YL    DL + +
Sbjct: 1061 MKDMGPASRILGIDIKRDREQDTLKLCQSGYIQKVLKRFKMSESKAVAT------PMGSHFKL--ASVKNADERIDTEKVPYLSAVGSVMYAMVGTRPDVAYALGLVSRFMSKPGSIHWEAVKWLLRYLRGSADLNLIY 1191          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A0C9VSW1_SPHS4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VSW1_SPHS4)

HSP 1 Score: 79.0 bits (193), Expect = 6.130e-14
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 0
Query:    1 MKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITF 139
            M DLG    +LG+E+ RD P+ T+SISQ  Y  ++L+R+G   C+  PT    P  +G  L  +        S    +S  Y+  +GSLMY   GT  D  +++   +     P  E     KR+  Y+    DLG+ F
Sbjct:  425 MTDLGEAHWILGMEITRDRPSHTLSISQKAYFAEILERFGMSDCKPAPT----PMEVGVSLRKL--------SEAEVDSQHYQSAVGSLMYGMIGTHPDVAHSVGVLSQHCATPGEEHEKGNKRVLRYIKGTTDLGLVF 551          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: Q18L98_CITSI (Putative gag-pol polyprotein n=2 Tax=Citrus sinensis TaxID=2711 RepID=Q18L98_CITSI)

HSP 1 Score: 79.0 bits (193), Expect = 6.630e-14
Identity = 53/155 (34.19%), Postives = 75/155 (48.39%), Query Frame = 0
Query:    1 MKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFG----DRVMVTVWKDS 151
            MKDLG    +LG+++ RD   GT+ +SQG YI+KVL+R+    C+ V T      PLG       A   E  S+   N   Y   +GSLMY    TRSD  YA+   +  +  P +   +  K I  YL      G+ +G    D++ V  + DS
Sbjct: 1039 MKDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQT------PLGPQFKLSAATTSEDESQM--NEFPYAQAVGSLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIMRYLKGSSTCGLLYGKTKSDKIEVMGFVDS 1185          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A293MM55_ORNER3.520e-1638.30Reverse transcriptase, gag, polyprotein (Fragment)... [more]
A0A4Y2FQW3_ARAVE1.390e-1533.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3CVC5_NOCCA4.160e-1534.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2JQ19_9BRAS8.910e-1535.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6N2NJF6_SALVM1.350e-1433.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6N2MJZ2_SALVM1.940e-1433.33Uncharacterized protein n=6 Tax=Salix viminalis Ta... [more]
A0A6H5KPN4_9PHAE2.680e-1432.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00142E19AD3.590e-1433.09uncharacterized protein LOC103874474 n=1 Tax=Brass... [more]
A0A0C9VSW1_SPHS46.130e-1432.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q18L98_CITSI6.630e-1434.19Putative gag-pol polyprotein n=2 Tax=Citrus sinens... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1122contigH-paniculata_contig1122:9475..10038 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1122.774.1mRNA_H-paniculata_contig1122.774.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1122 9229..10358 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1122.774.1 ID=prot_H-paniculata_contig1122.774.1|Name=mRNA_H-paniculata_contig1122.774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
MKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTS
PPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDT
VYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFGDRVMVTVWKD
SLMPIGRKMLRTESPQQDIYSR*
back to top