mRNA_H-paniculata_contig1122.774.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: H3H910_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H910_PHYRM) HSP 1 Score: 140 bits (353), Expect = 1.280e-35 Identity = 75/222 (33.78%), Postives = 125/222 (56.31%), Query Frame = 1 Query: 1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAGRREKV-DEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITF 663 V +L+++LYGLKQS + W+ T+DDF++ +G ++ +D C+Y RD G++ I VA+YVDDLV+A +++ + KH + +RF M DLG L LG+E++ DH +G +++ Q +++ +L ++G + V T P+ L + G Q + + + YR +G+LMY+ TR D A+ + DPC KR+ YL P G+ F Sbjct: 16 VCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSNDELLESTKHALCKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKT--PQDPGLKLTKNMCEDGCQHEDTMKN---VPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF 230
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A2Z7AL20_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AL20_9LAMI) HSP 1 Score: 142 bits (359), Expect = 3.710e-35 Identity = 81/223 (36.32%), Postives = 122/223 (54.71%), Query Frame = 1 Query: 1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAG-RREKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFG 666 V RL+K+LYGLKQ+ + W D +++ +G R + DPC YF R G + I++ +YVDD+++AG +++V E K + R F MKDLGP + +LG++V RD N I +SQ Y++K L R+ + + T P P+ LS E+ R + I Y +GSLM+ TR D A+ + M +P RE ST KRI Y+ + + FG Sbjct: 124 VCRLKKSLYGLKQAPRCWYKRFDSYIMSLGYNRLSADPCTYFKRSGGNDY-IILLLYVDDMLVAGPNKDRVQELKAQLAREFDMKDLGPANKILGMQVHRDRSNRKIWLSQTNYLQKFLHRFNMQDSKPIST----PLPVNFKLSSDMCPSNEAE-RMEMSRIPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGREHWSTVKRILRYIKGTSNAALCFG 340
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A2G2W4T7_CAPBA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2W4T7_CAPBA) HSP 1 Score: 145 bits (367), Expect = 9.890e-35 Identity = 85/225 (37.78%), Postives = 124/225 (55.11%), Query Frame = 1 Query: 1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAGR-REKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGA---VLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITF 663 V RL+K+LYGLKQS + W D F+ G G RS+ D C+YF + + + + + +YVDD++IA R + VD+ K +N F MKDLGP +LG+E+ RD G + +SQ Y+ K+L R+G C+ V T PL A + SD Q +RR + + Y +GSLMY TR D YA+ + M +P ++ + K I YL PD+G+ F Sbjct: 614 VCRLKKSLYGLKQSPRQWYKRFDSFMTGHGYSRSSYDNCVYFQK-LSDGSLVYLLLYVDDMLIAARDKTLVDKLKVQLNSEFDMKDLGPAKKILGMEINRDRQAGKLFLSQKKYVMKMLDRFGMRDCKAVNT------PLAAHFKLSSD--QCPQSEEEQRRMSHVPYSNAVGSLMYAMVCTRPDLAYAVSVVSRFMHNPGKQHWESVKWILRYLKGSPDIGLVF 829
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY) HSP 1 Score: 145 bits (366), Expect = 1.320e-34 Identity = 86/227 (37.89%), Postives = 125/227 (55.07%), Query Frame = 1 Query: 1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAGRREKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRA----NSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFGD 669 V RL++ LYGLKQSG+ + + L +GL RS D C+++ R+E + +L+A+ VDD IAG + V FK I+ RF M DLG + +LG+EVRRD T+S+SQ YI +L R+ + + T P G VLS + + S R +I YR +GSLMY + GTR D YA+ + M++P R KR+F YL+ + +TFG+ Sbjct: 1064 VCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNLQDAKSLTT----PLDPGTVLS-----IHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMQNPGRPHWEAAKRVFRYLAGTRERWLTFGE 1281
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A2N9IUS6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUS6_FAGSY) HSP 1 Score: 144 bits (363), Expect = 3.620e-34 Identity = 75/223 (33.63%), Postives = 128/223 (57.40%), Query Frame = 1 Query: 1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAG-RREKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFG 666 V +L K+LYGLKQ+ + W D F++ +G R ++DPC+Y+ R G+ I++ +YVDD+++AG ++++ + K + R F MKDLGP + +LG+++ RD N I +SQ Y++K+L+R+ C+ +PT P P+ LS + E+ R + + Y +GSLM+ TR D A+ + M +P +E S KRI Y+ ++ + +G Sbjct: 2020 VCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRF-GDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPT----PLPINFKLSSSMSPSNEAE-RMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMVNPGKEHWSAVKRILRYVKGTSNVALCYG 2236
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY) HSP 1 Score: 142 bits (359), Expect = 4.210e-34 Identity = 84/227 (37.00%), Postives = 127/227 (55.95%), Query Frame = 1 Query: 1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAGRREKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRA----NSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFGD 669 V RL++ LYGLKQSG+ + + L +GL RS D C+++ R+E + +L+A+ VDD IAG + V FK I+ RF+M DLG + +LG+EV+RD T+S+SQ YI +L R+ + + T P G VLS + + S R +I YR ++GSLMY + GTR D YA+ + M++P + KR+F YL+ + +TFG+ Sbjct: 254 VCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTT----PLDPGTVLS-----IHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFGE 471
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: H3H925_PHYRM (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H925_PHYRM) HSP 1 Score: 142 bits (359), Expect = 5.540e-34 Identity = 75/222 (33.78%), Postives = 126/222 (56.76%), Query Frame = 1 Query: 1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAGRREKV-DEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITF 663 V +L+++LYGLKQS + W+ T+DDF++ +G ++ +D C+Y RD G++ I VA+YVDDLV+A +++ + KH +++RF M DLG L LG+E++ DH +G +++ Q +++ +L ++G + V T P+ L + G Q + + + YR +G+LMY+ TR D A+ + DPC KR+ YL P G+ F Sbjct: 346 VCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKT--PQDPGLKLTKNMCEGGCQHEDTMKN---VPYRSAIGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF 560
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A2N9HLU0_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HLU0_FAGSY) HSP 1 Score: 143 bits (361), Expect = 6.150e-34 Identity = 74/223 (33.18%), Postives = 128/223 (57.40%), Query Frame = 1 Query: 1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAG-RREKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFG 666 V +L K+LYGLKQ+ + W D F++ +G R ++DPC+Y+ R G+ I++ +YVDD+++AG ++++ + K + R F MKDLGP + +LG+++ RD N I +SQ Y++K+L+R+ C+ +PT P P+ LS + E+ R + + Y +GSLM+ TR D A+ + M +P +E + KRI Y+ ++ + +G Sbjct: 938 VCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRF-GDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPT----PLPINFKLSSSMSPSNEAE-RMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMANPGKEHWNAVKRILRYVKGTSNVALCYG 1154
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A2N9GY85_FAGSY (Glutaredoxin-dependent peroxiredoxin n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GY85_FAGSY) HSP 1 Score: 143 bits (361), Expect = 6.320e-34 Identity = 74/223 (33.18%), Postives = 128/223 (57.40%), Query Frame = 1 Query: 1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAG-RREKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFG 666 V +L K+LYGLKQ+ + W D F++ +G R ++DPC+Y+ R G+ I++ +YVDD+++AG ++++ + K + R F MKDLGP + +LG+++ RD N I +SQ Y++K+L+R+ C+ +PT P P+ LS + E+ R + + Y +GSLM+ TR D A+ + M +P +E + KRI Y+ ++ + +G Sbjct: 1372 VCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRF-GDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPT----PLPINFKLSSSMSPSNEAE-RMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMANPGKEHWNAVKRILRYVKGTSNVALCYG 1588
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A2N9FMI2_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FMI2_FAGSY) HSP 1 Score: 143 bits (361), Expect = 6.320e-34 Identity = 74/223 (33.18%), Postives = 128/223 (57.40%), Query Frame = 1 Query: 1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAG-RREKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFG 666 V +L K+LYGLKQ+ + W D F++ +G R ++DPC+Y+ R G+ I++ +YVDD+++AG ++++ + K + R F MKDLGP + +LG+++ RD N I +SQ Y++K+L+R+ C+ +PT P P+ LS + E+ R + + Y +GSLM+ TR D A+ + M +P +E + KRI Y+ ++ + +G Sbjct: 44 VCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRF-GDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPT----PLPINFKLSSSMSPSNEAE-RMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMANPGKEHWNAVKRILRYVKGTSNVALCYG 260 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1122.774.1 >prot_H-paniculata_contig1122.774.1 ID=prot_H-paniculata_contig1122.774.1|Name=mRNA_H-paniculata_contig1122.774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp MKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSback to top mRNA from alignment at H-paniculata_contig1122:9229..10358+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1122.774.1 ID=mRNA_H-paniculata_contig1122.774.1|Name=mRNA_H-paniculata_contig1122.774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1130bp|location=Sequence derived from alignment at H-paniculata_contig1122:9229..10358+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1122:9229..10358+ >mRNA_H-paniculata_contig1122.774.1 ID=mRNA_H-paniculata_contig1122.774.1|Name=mRNA_H-paniculata_contig1122.774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig1122:9229..10358+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |