mRNA_H-paniculata_contig1122.774.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1122.774.1
Unique NamemRNA_H-paniculata_contig1122.774.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: H3H910_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H910_PHYRM)

HSP 1 Score: 140 bits (353), Expect = 1.280e-35
Identity = 75/222 (33.78%), Postives = 125/222 (56.31%), Query Frame = 1
Query:    1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAGRREKV-DEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITF 663
            V +L+++LYGLKQS + W+ T+DDF++ +G ++  +D C+Y  RD G++  I VA+YVDDLV+A   +++ +  KH + +RF M DLG L   LG+E++ DH +G +++ Q  +++ +L ++G    + V T  P+   L    +    G Q   + +    + YR  +G+LMY+   TR D   A+   +    DPC       KR+  YL   P  G+ F
Sbjct:   16 VCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSNDELLESTKHALCKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKT--PQDPGLKLTKNMCEDGCQHEDTMKN---VPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF 230          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A2Z7AL20_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AL20_9LAMI)

HSP 1 Score: 142 bits (359), Expect = 3.710e-35
Identity = 81/223 (36.32%), Postives = 122/223 (54.71%), Query Frame = 1
Query:    1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAG-RREKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFG 666
            V RL+K+LYGLKQ+ + W    D +++ +G  R + DPC YF R  G +  I++ +YVDD+++AG  +++V E K  + R F MKDLGP + +LG++V RD  N  I +SQ  Y++K L R+     + + T    P P+   LS       E+  R   + I Y   +GSLM+    TR D   A+   +  M +P RE  ST KRI  Y+    +  + FG
Sbjct:  124 VCRLKKSLYGLKQAPRCWYKRFDSYIMSLGYNRLSADPCTYFKRSGGNDY-IILLLYVDDMLVAGPNKDRVQELKAQLAREFDMKDLGPANKILGMQVHRDRSNRKIWLSQTNYLQKFLHRFNMQDSKPIST----PLPVNFKLSSDMCPSNEAE-RMEMSRIPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGREHWSTVKRILRYIKGTSNAALCFG 340          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A2G2W4T7_CAPBA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2W4T7_CAPBA)

HSP 1 Score: 145 bits (367), Expect = 9.890e-35
Identity = 85/225 (37.78%), Postives = 124/225 (55.11%), Query Frame = 1
Query:    1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAGR-REKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGA---VLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITF 663
            V RL+K+LYGLKQS + W    D F+ G G  RS+ D C+YF +   + + + + +YVDD++IA R +  VD+ K  +N  F MKDLGP   +LG+E+ RD   G + +SQ  Y+ K+L R+G   C+ V T      PL A   + SD     Q    +RR + + Y   +GSLMY    TR D  YA+   +  M +P ++   + K I  YL   PD+G+ F
Sbjct:  614 VCRLKKSLYGLKQSPRQWYKRFDSFMTGHGYSRSSYDNCVYFQK-LSDGSLVYLLLYVDDMLIAARDKTLVDKLKVQLNSEFDMKDLGPAKKILGMEINRDRQAGKLFLSQKKYVMKMLDRFGMRDCKAVNT------PLAAHFKLSSD--QCPQSEEEQRRMSHVPYSNAVGSLMYAMVCTRPDLAYAVSVVSRFMHNPGKQHWESVKWILRYLKGSPDIGLVF 829          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 145 bits (366), Expect = 1.320e-34
Identity = 86/227 (37.89%), Postives = 125/227 (55.07%), Query Frame = 1
Query:    1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAGRREKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRA----NSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFGD 669
            V RL++ LYGLKQSG+ +   +   L  +GL RS  D C+++ R+E +   +L+A+ VDD  IAG +  V  FK  I+ RF M DLG +  +LG+EVRRD    T+S+SQ  YI  +L R+     + + T    P   G VLS     + +  S  R      +I YR  +GSLMY + GTR D  YA+   +  M++P R      KR+F YL+   +  +TFG+
Sbjct: 1064 VCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYIDMILTRFNLQDAKSLTT----PLDPGTVLS-----IHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMQNPGRPHWEAAKRVFRYLAGTRERWLTFGE 1281          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A2N9IUS6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUS6_FAGSY)

HSP 1 Score: 144 bits (363), Expect = 3.620e-34
Identity = 75/223 (33.63%), Postives = 128/223 (57.40%), Query Frame = 1
Query:    1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAG-RREKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFG 666
            V +L K+LYGLKQ+ + W    D F++ +G  R ++DPC+Y+ R  G+   I++ +YVDD+++AG  ++++ + K  + R F MKDLGP + +LG+++ RD  N  I +SQ  Y++K+L+R+    C+ +PT    P P+   LS   +   E+  R   + + Y   +GSLM+    TR D   A+   +  M +P +E  S  KRI  Y+    ++ + +G
Sbjct: 2020 VCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRF-GDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPT----PLPINFKLSSSMSPSNEAE-RMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMVNPGKEHWSAVKRILRYVKGTSNVALCYG 2236          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 142 bits (359), Expect = 4.210e-34
Identity = 84/227 (37.00%), Postives = 127/227 (55.95%), Query Frame = 1
Query:    1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAGRREKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRA----NSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFGD 669
            V RL++ LYGLKQSG+ +   +   L  +GL RS  D C+++ R+E +   +L+A+ VDD  IAG +  V  FK  I+ RF+M DLG +  +LG+EV+RD    T+S+SQ  YI  +L R+     + + T    P   G VLS     + +  S  R      +I YR ++GSLMY + GTR D  YA+   +  M++P +      KR+F YL+   +  +TFG+
Sbjct:  254 VCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAGTKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTT----PLDPGTVLS-----IHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFGE 471          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: H3H925_PHYRM (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H925_PHYRM)

HSP 1 Score: 142 bits (359), Expect = 5.540e-34
Identity = 75/222 (33.78%), Postives = 126/222 (56.76%), Query Frame = 1
Query:    1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAGRREKV-DEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITF 663
            V +L+++LYGLKQS + W+ T+DDF++ +G ++  +D C+Y  RD G++  I VA+YVDDLV+A   +++ +  KH +++RF M DLG L   LG+E++ DH +G +++ Q  +++ +L ++G    + V T  P+   L    +    G Q   + +    + YR  +G+LMY+   TR D   A+   +    DPC       KR+  YL   P  G+ F
Sbjct:  346 VCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD-GQDM-IFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKT--PQDPGLKLTKNMCEGGCQHEDTMKN---VPYRSAIGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF 560          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A2N9HLU0_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HLU0_FAGSY)

HSP 1 Score: 143 bits (361), Expect = 6.150e-34
Identity = 74/223 (33.18%), Postives = 128/223 (57.40%), Query Frame = 1
Query:    1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAG-RREKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFG 666
            V +L K+LYGLKQ+ + W    D F++ +G  R ++DPC+Y+ R  G+   I++ +YVDD+++AG  ++++ + K  + R F MKDLGP + +LG+++ RD  N  I +SQ  Y++K+L+R+    C+ +PT    P P+   LS   +   E+  R   + + Y   +GSLM+    TR D   A+   +  M +P +E  +  KRI  Y+    ++ + +G
Sbjct:  938 VCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRF-GDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPT----PLPINFKLSSSMSPSNEAE-RMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMANPGKEHWNAVKRILRYVKGTSNVALCYG 1154          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A2N9GY85_FAGSY (Glutaredoxin-dependent peroxiredoxin n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GY85_FAGSY)

HSP 1 Score: 143 bits (361), Expect = 6.320e-34
Identity = 74/223 (33.18%), Postives = 128/223 (57.40%), Query Frame = 1
Query:    1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAG-RREKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFG 666
            V +L K+LYGLKQ+ + W    D F++ +G  R ++DPC+Y+ R  G+   I++ +YVDD+++AG  ++++ + K  + R F MKDLGP + +LG+++ RD  N  I +SQ  Y++K+L+R+    C+ +PT    P P+   LS   +   E+  R   + + Y   +GSLM+    TR D   A+   +  M +P +E  +  KRI  Y+    ++ + +G
Sbjct: 1372 VCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRF-GDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPT----PLPINFKLSSSMSPSNEAE-RMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMANPGKEHWNAVKRILRYVKGTSNVALCYG 1588          
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Match: A0A2N9FMI2_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FMI2_FAGSY)

HSP 1 Score: 143 bits (361), Expect = 6.320e-34
Identity = 74/223 (33.18%), Postives = 128/223 (57.40%), Query Frame = 1
Query:    1 VRRLRKNLYGLKQSGQNWSNTLDDFLVGIGLQRSTTDPCLYFSRDEGEETDILVAVYVDDLVIAG-RREKVDEFKHNINRRFRMKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTSPPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDTVYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFG 666
            V +L K+LYGLKQ+ + W    D F++ +G  R ++DPC+Y+ R  G+   I++ +YVDD+++AG  ++++ + K  + R F MKDLGP + +LG+++ RD  N  I +SQ  Y++K+L+R+    C+ +PT    P P+   LS   +   E+  R   + + Y   +GSLM+    TR D   A+   +  M +P +E  +  KRI  Y+    ++ + +G
Sbjct:   44 VCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRF-GDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPT----PLPINFKLSSSMSPSNEAE-RMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMANPGKEHWNAVKRILRYVKGTSNVALCYG 260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1122.774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3H910_PHYRM1.280e-3533.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2Z7AL20_9LAMI3.710e-3536.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2G2W4T7_CAPBA9.890e-3537.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A401GN13_9APHY1.320e-3437.89Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A2N9IUS6_FAGSY3.620e-3433.63Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A401GP19_9APHY4.210e-3437.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H925_PHYRM5.540e-3433.78Integrase catalytic domain-containing protein n=2 ... [more]
A0A2N9HLU0_FAGSY6.150e-3433.18Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]
A0A2N9GY85_FAGSY6.320e-3433.18Glutaredoxin-dependent peroxiredoxin n=1 Tax=Fagus... [more]
A0A2N9FMI2_FAGSY6.320e-3433.18Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1122contigH-paniculata_contig1122:9229..10358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.0
Seed ortholog evalue2.4e-15
Seed eggNOG ortholog161934.XP_010676254.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3894V@33090,3GY0Z@35493,COG2801@1,KOG0017@2759
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size1085
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1122.774.1prot_H-paniculata_contig1122.774.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1122 9475..10038 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.9170177-UTR-H-paniculata_contig1122:9228..94741622928825.9170177-UTR-H-paniculata_contig1122:9228..9474Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1122 9229..9474 +
1691480635.4692538-UTR-H-paniculata_contig1122:9228..94741691480635.4692538-UTR-H-paniculata_contig1122:9228..9474Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1122 9229..9474 +
1622928825.9673626-UTR-H-paniculata_contig1122:10038..103581622928825.9673626-UTR-H-paniculata_contig1122:10038..10358Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1122 10039..10358 +
1691480635.4956825-UTR-H-paniculata_contig1122:10038..103581691480635.4956825-UTR-H-paniculata_contig1122:10038..10358Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1122 10039..10358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.9313495-CDS-H-paniculata_contig1122:9474..96241622928825.9313495-CDS-H-paniculata_contig1122:9474..9624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1122 9475..9624 +
1691480635.480815-CDS-H-paniculata_contig1122:9474..96241691480635.480815-CDS-H-paniculata_contig1122:9474..9624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1122 9475..9624 +
1622928825.9506183-CDS-H-paniculata_contig1122:9669..100381622928825.9506183-CDS-H-paniculata_contig1122:9669..10038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1122 9670..10038 +
1691480635.4888422-CDS-H-paniculata_contig1122:9669..100381691480635.4888422-CDS-H-paniculata_contig1122:9669..10038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1122 9670..10038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1122.774.1

>prot_H-paniculata_contig1122.774.1 ID=prot_H-paniculata_contig1122.774.1|Name=mRNA_H-paniculata_contig1122.774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
MKDLGPLSCVLGVEVRRDHPNGTISISQGGYIRKVLKRYGFDGCRGVPTS
PPKPKPLGAVLSDIGAGVQESSSRRRANSIEYRGMLGSLMYVSTGTRSDT
VYALHQAASCMEDPCREDSSTCKRIFPYLSTVPDLGITFGDRVMVTVWKD
SLMPIGRKMLRTESPQQDIYSR*
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mRNA from alignment at H-paniculata_contig1122:9229..10358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1122.774.1 ID=mRNA_H-paniculata_contig1122.774.1|Name=mRNA_H-paniculata_contig1122.774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1130bp|location=Sequence derived from alignment at H-paniculata_contig1122:9229..10358+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCGCCGCCTGCGTAAAAACCTGTATGGCCTCAAGCAGAGCGGCCAAAA CTGGAGTAACACTCTTGACGATTTTCTTGTTGGGATAGGACTCCAGCGTT CCACTACCGACCCATGCTTGTACTTCTCTCGCGATGAGGGGGAAGAGACA GATATTCTCGTGGCCGTCTATGTTGACGACCTGGTCATCGCTGGGCGTCG TGAGAAAGTAGACGAGTTCAAGCACAACATAAATCGGCGTTTTAGGATGA AAGACTTGGGCCCCCTCTCGTGCGTGTTGGGAGTAGAAGTACGACGTGAC CACCCCAATGGTACCATATCAATATCCCAAGGTGGCTACATCCGCAAGGT ACTGAAAAGATACGGTTTTGACGGATGCCGAGGTGTGCCCACCTCTGTAG AGTGAAAATTAAAGATTTTGGCACCCGAGTCGGCCGACAAGCCCCCCAAA CCAAAACCACTCGGGGCTGTGCTGTCGGACATAGGCGCAGGAGTACAAGA AAGCAGCAGTAGAAGACGTGCCAATTCAATTGAATACAGAGGCATGTTAG GATCACTCATGTACGTCTCGACAGGAACTAGATCTGATACAGTATACGCG CTACACCAAGCAGCAAGTTGTATGGAAGACCCATGTCGAGAAGACTCCAG TACATGCAAGCGCATTTTTCCTTATCTCAGTACTGTGCCTGACCTCGGCA TTACGTTCGGCGATAGAGTAATGGTCACGGTCTGGAAGGATTCCTTGATG CCGATTGGGCGGAAAATGTTGAGGACCGAAAGTCCACAACAGGATATATA TTCAAGGTGAACGGTGGTGCGAAAAGTTGGTGCTCTAGGAAGAAACAGTT AGCAACGTGGTCCAATACAGAGGCAGAGTACATTGCTGCAGGAGAAGCTG GAAAGGAGACGGTATATCTTAGGGATTTACTAGGATCGATAGGTTTCGGA TGCAGGGGGAGCACGACATTATATGAGGACAACAAGTCAGCTATCAATCT CAGTAAAGGATTTGGTGCTCACTGCAGGACAAAGCACATCGGAGTGCGCT GGCACGGAATTCGAGAGTGGGTTCAGGAAGGAATATTGGCGTTGAGATAT GTGCATACCGGCCACCAACTTGCTGACATT
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Coding sequence (CDS) from alignment at H-paniculata_contig1122:9229..10358+

>mRNA_H-paniculata_contig1122.774.1 ID=mRNA_H-paniculata_contig1122.774.1|Name=mRNA_H-paniculata_contig1122.774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig1122:9229..10358+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGACTTGGGCCCCCTCTCGTGCGTGTTGGGAGTAGAAGTACGACG
TGACCACCCCAATGGTACCATATCAATATCCCAAGGTGGCTACATCCGCA
AGGTACTGAAAAGATACGGTTTTGACGGATGCCGAGGTGTGCCCACCTCT
ATGAAAGACTTGGGCCCCCTCTCGTGCGTGTTGGGAGTAGAAGTACGACG
TGACCACCCCAATGGTACCATATCAATATCCCAAGGTGGCTACATCCGCA
AGGTACTGAAAAGATACGGTTTTGACGGATGCCGAGGTGTGCCCACCTCT
CCCCCCAAACCAAAACCACTCGGGGCTGTGCTGTCGGACATAGGCGCAGG
AGTACAAGAAAGCAGCAGTAGAAGACGTGCCAATTCAATTGAATACAGAG
GCATGTTAGGATCACTCATGTACGTCTCGACAGGAACTAGATCTGATACA
GTATACGCGCTACACCAAGCAGCAAGTTGTATGGAAGACCCATGTCGAGA
AGACTCCAGTACATGCAAGCGCATTTTTCCTTATCTCAGTACTGTGCCTG
ACCTCGGCATTACGTTCGGCGATAGAGTAATGGTCACGGTCTGGAAGGAT
TCCTTGATGCCGATTGGGCGGAAAATGTTGAGGACCGAAAGTCCACAACA
GGATATATATTCAAGGTGACCCCCCAAACCAAAACCACTCGGGGCTGTGC
TGTCGGACATAGGCGCAGGAGTACAAGAAAGCAGCAGTAGAAGACGTGCC
AATTCAATTGAATACAGAGGCATGTTAGGATCACTCATGTACGTCTCGAC
AGGAACTAGATCTGATACAGTATACGCGCTACACCAAGCAGCAAGTTGTA
TGGAAGACCCATGTCGAGAAGACTCCAGTACATGCAAGCGCATTTTTCCT
TATCTCAGTACTGTGCCTGACCTCGGCATTACGTTCGGCGATAGAGTAAT
GGTCACGGTCTGGAAGGATTCCTTGATGCCGATTGGGCGGAAAATGTTGA
GGACCGAAAGTCCACAACAGGATATATATTCAAGGTGA
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