mRNA_H-paniculata_contig2829.7723.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2829.7723.1 vs. uniprot
Match: D7FR44_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR44_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 1.590e-11 Identity = 107/311 (34.41%), Postives = 149/311 (47.91%), Query Frame = 1
Query: 148 LSADEIAYLEQVFVSIADDWQKPRVSVAQALECLEQMDFLVTGESADLIRAVVPASATADSLDLQDVIKVASLVKAKDTA---PSASYLDRDDSLVELENSFKSQMAAGQ--SDLKETNLFXXXXXXXXXXXXXXXXXXXXQIPDTVAEEVEAPKSPVG------PLTSATGFASITPSDAPVMRRRSIAVTVPTLSLVPGPSPPRSESLKVFQREYASLEGPEPKQVDVPQRRSSLNTRPGNSALIDAPNIVPT------NFEDSPLPLSQQELAKQESEAELLASVGGLSAELVTESDLPVKRRSVCLT 1029
L +DE+ ++ + F D R++VA+ + CL+QMDF++ G DLIR+VVPA+ D L L D IKVA+ K ++ P + R+ SL ELE+SF ++ G+ +D E XXXXXXXXXXXXXXX + P G P +A G A PV RRRSIA P S +P + F + + PE P+RR S+ + S + VP + +DS LP S E+ SE ELL S G L E V S +P +RRS+ ++
Sbjct: 141 LDSDELDFVRRQFKD-GDVKSDGRINVAKLMACLKQMDFILEGSPKDLIRSVVPAAMDVDRLSLNDAIKVATAAKTQEQGSAPPQRPGIGREGSLAELESSFNKRIMLGEITADAIEEEPRVPSVGXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPAGIESAPPPAVAAVGLA------VPV-RRRSIAGNHPVPSSPSTTAPWPTSRGSSFSSAHGQGQEPEVVVDKFPKRRMSVASSGSGSLKGIRADSVPGPGGGRGDDDDSTLPASP-EMLTMTSEMELLDSAGSLGVEPVITSAVP-RRRSITVS 441 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2829.7723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2829.7723.1 >prot_H-paniculata_contig2829.7723.1 ID=prot_H-paniculata_contig2829.7723.1|Name=mRNA_H-paniculata_contig2829.7723.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=767bp MTSQESEHLSADEIAYLEQVFVSIADDWQKPRVSVAQALECLEQMDFLVTback to top mRNA from alignment at H-paniculata_contig2829:1125..16361- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2829.7723.1 ID=mRNA_H-paniculata_contig2829.7723.1|Name=mRNA_H-paniculata_contig2829.7723.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15237bp|location=Sequence derived from alignment at H-paniculata_contig2829:1125..16361- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2829:1125..16361- >mRNA_H-paniculata_contig2829.7723.1 ID=mRNA_H-paniculata_contig2829.7723.1|Name=mRNA_H-paniculata_contig2829.7723.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4602bp|location=Sequence derived from alignment at H-paniculata_contig2829:1125..16361- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |