mRNA_H-paniculata_contig28252.7717.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: D8LDP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP5_ECTSI) HSP 1 Score: 194 bits (492), Expect = 9.760e-56 Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 1
Query: 1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVL TGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPP RQNVTTYIMKGTD++V AL REM RGGQV
Sbjct: 222 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLTTGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPANRQNVTTYIMKGTDEIVQRALTREMSRGGQV 327
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A6H5JUP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUP0_9PHAE) HSP 1 Score: 194 bits (492), Expect = 3.090e-55 Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 1
Query: 1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVL TGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPP RQNVTTYIMKGTD++V AL REM RGGQV
Sbjct: 582 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLTTGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPANRQNVTTYIMKGTDEIVQRALTREMSRGGQV 687
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A835YLF5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLF5_9STRA) HSP 1 Score: 166 bits (420), Expect = 5.540e-46 Identity = 83/106 (78.30%), Postives = 93/106 (87.74%), Query Frame = 1
Query: 1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
VVGTH+LL RKVEF LGLLV+DEEQKFGV+QKE+LK LATGVDVLTLTATPIPRTLHMSL+GIRDLS I SPP GR NVTTYIMK TD+V+ A+ RE++R GQV
Sbjct: 246 VVGTHTLLGRKVEFSGLGLLVVDEEQKFGVHQKERLKALATGVDVLTLTATPIPRTLHMSLSGIRDLSIIQSPPEGRLNVTTYIMKSTDEVIQRAVARELRRKGQV 351
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: UPI000D41A13D (DEAD/DEAH box helicase n=1 Tax=Enterococcus faecium TaxID=1352 RepID=UPI000D41A13D) HSP 1 Score: 136 bits (342), Expect = 1.370e-37 Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 1
Query: 1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
VVGTH +LS+ +EF +LGLL+IDEEQ+FGV KE+LK L VDVLTLTATPIPRTLHMS+ G+RDLS I +PP R + TY+M+ + A++REM RGGQV
Sbjct: 104 VVGTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQV 209
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A3C0VRB2_9FIRM (Transcription-repair-coupling factor n=1 Tax=Lachnospiraceae bacterium TaxID=1898203 RepID=A0A3C0VRB2_9FIRM) HSP 1 Score: 143 bits (361), Expect = 1.430e-37 Identity = 68/106 (64.15%), Postives = 85/106 (80.19%), Query Frame = 1
Query: 1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
V+GTH LLS+ VEF NLGLL++DEEQ+FGV+ KEK+K L VDVLTLTATPIPRTLHMSL GIRD+S + P+ RQ + TY+M+ D++V A+NRE+ RGGQV
Sbjct: 738 VIGTHRLLSKDVEFTNLGLLIVDEEQRFGVSHKEKIKKLKENVDVLTLTATPIPRTLHMSLIGIRDMSLLEEAPMDRQPIQTYVMEYNDEMVREAINRELSRGGQV 843
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A3D2TY90_9FIRM (Transcription-repair-coupling factor n=6 Tax=Eubacteriales TaxID=186802 RepID=A0A3D2TY90_9FIRM) HSP 1 Score: 143 bits (360), Expect = 1.960e-37 Identity = 66/106 (62.26%), Postives = 85/106 (80.19%), Query Frame = 1
Query: 1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
+VGTH LLS+ VEF NLGLL++DEEQ+FGV KEK+K + VDVLTL+ATPIPRTLHMSLTGIRD+S + PPV R + T++M+ D+++ A+NRE+ RGGQV
Sbjct: 735 IVGTHRLLSKDVEFKNLGLLIVDEEQRFGVTHKEKIKQMKGNVDVLTLSATPIPRTLHMSLTGIRDMSVLEEPPVDRLPIQTFVMEHNDEIIREAINRELGRGGQV 840
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A2M9Q7T0_9BACI (Transcription-repair coupling factor (Fragment) n=1 Tax=Lysinibacillus xylanilyticus TaxID=582475 RepID=A0A2M9Q7T0_9BACI) HSP 1 Score: 135 bits (341), Expect = 1.980e-37 Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 1
Query: 1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
VVGTH +LS+ + F +LGLL++DEEQ+FGV KEK+K L T VDVLTLTATPIPRTLHMS+ G+RDLS I +PP R V TY+M+ + +V A+ REM RGGQV
Sbjct: 148 VVGTHRILSKDLIFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMVGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQV 253
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A349YRH1_9FIRM (Transcription-repair coupling factor (Fragment) n=1 Tax=Lachnospiraceae bacterium TaxID=1898203 RepID=A0A349YRH1_9FIRM) HSP 1 Score: 141 bits (355), Expect = 2.120e-37 Identity = 66/106 (62.26%), Postives = 84/106 (79.25%), Query Frame = 1
Query: 1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
VVGTH LLS+ V F NLGLL++DEEQ+FGV KEK+K + VDVLTL+ATPIPRTLHMSL GIRD+S + PPV RQ + T++++ D++V A+NRE+ RGGQV
Sbjct: 91 VVGTHRLLSKDVLFKNLGLLIVDEEQRFGVTHKEKIKQMKEDVDVLTLSATPIPRTLHMSLVGIRDMSVLEEPPVDRQPIQTFVLEHNDEIVREAINRELNRGGQV 196
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A2K2FGQ8_9FIRM (Transcription-repair-coupling factor n=2 Tax=Pseudoclostridium thermosuccinogenes TaxID=84032 RepID=A0A2K2FGQ8_9FIRM) HSP 1 Score: 142 bits (359), Expect = 2.660e-37 Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = 1
Query: 1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
+VGTH LL + ++F NLGLLV+DEEQ+FGV KEKLK L T VDVLTLTATPIPRTLHMSL GIRD+S I PP R V TY+M+ DV+ A+NRE+ RGGQV
Sbjct: 732 LVGTHKLLQKDIQFKNLGLLVVDEEQRFGVTHKEKLKSLKTNVDVLTLTATPIPRTLHMSLIGIRDISVIEDPPEERYPVQTYVMEYNPDVIRDAINRELARGGQV 837
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A1I0EBH0_9FIRM (Transcription-repair-coupling factor n=1 Tax=[Clostridium] polysaccharolyticum TaxID=29364 RepID=A0A1I0EBH0_9FIRM) HSP 1 Score: 142 bits (359), Expect = 2.670e-37 Identity = 65/106 (61.32%), Postives = 85/106 (80.19%), Query Frame = 1
Query: 1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
V+GTH LLS+ V+F NLGLL++DEEQ+FGV KEK+K + VDVLTL+ATPIPRTLHMSL GIRD+S + PPV RQ + T++++ D++V A+NRE+ RGGQV
Sbjct: 739 VIGTHRLLSKDVQFKNLGLLIVDEEQRFGVTHKEKIKQMKEDVDVLTLSATPIPRTLHMSLAGIRDMSVLEEPPVDRQPIQTFVLEHNDEIVREAINRELNRGGQV 844 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig28252.7717.1 >prot_H-paniculata_contig28252.7717.1 ID=prot_H-paniculata_contig28252.7717.1|Name=mRNA_H-paniculata_contig28252.7717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTAback to top mRNA from alignment at H-paniculata_contig28252:2132..2833- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig28252.7717.1 ID=mRNA_H-paniculata_contig28252.7717.1|Name=mRNA_H-paniculata_contig28252.7717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=702bp|location=Sequence derived from alignment at H-paniculata_contig28252:2132..2833- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig28252:2132..2833- >mRNA_H-paniculata_contig28252.7717.1 ID=mRNA_H-paniculata_contig28252.7717.1|Name=mRNA_H-paniculata_contig28252.7717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig28252:2132..2833- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |