mRNA_H-paniculata_contig28252.7717.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28252.7717.1
Unique NamemRNA_H-paniculata_contig28252.7717.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: D8LDP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP5_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 9.760e-56
Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 1
Query:    1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
            VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVL TGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPP  RQNVTTYIMKGTD++V  AL REM RGGQV
Sbjct:  222 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLTTGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPANRQNVTTYIMKGTDEIVQRALTREMSRGGQV 327          
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A6H5JUP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUP0_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 3.090e-55
Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 1
Query:    1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
            VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVL TGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPP  RQNVTTYIMKGTD++V  AL REM RGGQV
Sbjct:  582 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLTTGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPANRQNVTTYIMKGTDEIVQRALTREMSRGGQV 687          
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A835YLF5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLF5_9STRA)

HSP 1 Score: 166 bits (420), Expect = 5.540e-46
Identity = 83/106 (78.30%), Postives = 93/106 (87.74%), Query Frame = 1
Query:    1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
            VVGTH+LL RKVEF  LGLLV+DEEQKFGV+QKE+LK LATGVDVLTLTATPIPRTLHMSL+GIRDLS I SPP GR NVTTYIMK TD+V+  A+ RE++R GQV
Sbjct:  246 VVGTHTLLGRKVEFSGLGLLVVDEEQKFGVHQKERLKALATGVDVLTLTATPIPRTLHMSLSGIRDLSIIQSPPEGRLNVTTYIMKSTDEVIQRAVARELRRKGQV 351          
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: UPI000D41A13D (DEAD/DEAH box helicase n=1 Tax=Enterococcus faecium TaxID=1352 RepID=UPI000D41A13D)

HSP 1 Score: 136 bits (342), Expect = 1.370e-37
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
            VVGTH +LS+ +EF +LGLL+IDEEQ+FGV  KE+LK L   VDVLTLTATPIPRTLHMS+ G+RDLS I +PP  R  + TY+M+     +  A++REM RGGQV
Sbjct:  104 VVGTHRILSKDIEFSDLGLLIIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQV 209          
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A3C0VRB2_9FIRM (Transcription-repair-coupling factor n=1 Tax=Lachnospiraceae bacterium TaxID=1898203 RepID=A0A3C0VRB2_9FIRM)

HSP 1 Score: 143 bits (361), Expect = 1.430e-37
Identity = 68/106 (64.15%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
            V+GTH LLS+ VEF NLGLL++DEEQ+FGV+ KEK+K L   VDVLTLTATPIPRTLHMSL GIRD+S +   P+ RQ + TY+M+  D++V  A+NRE+ RGGQV
Sbjct:  738 VIGTHRLLSKDVEFTNLGLLIVDEEQRFGVSHKEKIKKLKENVDVLTLTATPIPRTLHMSLIGIRDMSLLEEAPMDRQPIQTYVMEYNDEMVREAINRELSRGGQV 843          
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A3D2TY90_9FIRM (Transcription-repair-coupling factor n=6 Tax=Eubacteriales TaxID=186802 RepID=A0A3D2TY90_9FIRM)

HSP 1 Score: 143 bits (360), Expect = 1.960e-37
Identity = 66/106 (62.26%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
            +VGTH LLS+ VEF NLGLL++DEEQ+FGV  KEK+K +   VDVLTL+ATPIPRTLHMSLTGIRD+S +  PPV R  + T++M+  D+++  A+NRE+ RGGQV
Sbjct:  735 IVGTHRLLSKDVEFKNLGLLIVDEEQRFGVTHKEKIKQMKGNVDVLTLSATPIPRTLHMSLTGIRDMSVLEEPPVDRLPIQTFVMEHNDEIIREAINRELGRGGQV 840          
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A2M9Q7T0_9BACI (Transcription-repair coupling factor (Fragment) n=1 Tax=Lysinibacillus xylanilyticus TaxID=582475 RepID=A0A2M9Q7T0_9BACI)

HSP 1 Score: 135 bits (341), Expect = 1.980e-37
Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
            VVGTH +LS+ + F +LGLL++DEEQ+FGV  KEK+K L T VDVLTLTATPIPRTLHMS+ G+RDLS I +PP  R  V TY+M+ +  +V  A+ REM RGGQV
Sbjct:  148 VVGTHRILSKDLIFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIPRTLHMSMVGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQV 253          
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A349YRH1_9FIRM (Transcription-repair coupling factor (Fragment) n=1 Tax=Lachnospiraceae bacterium TaxID=1898203 RepID=A0A349YRH1_9FIRM)

HSP 1 Score: 141 bits (355), Expect = 2.120e-37
Identity = 66/106 (62.26%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
            VVGTH LLS+ V F NLGLL++DEEQ+FGV  KEK+K +   VDVLTL+ATPIPRTLHMSL GIRD+S +  PPV RQ + T++++  D++V  A+NRE+ RGGQV
Sbjct:   91 VVGTHRLLSKDVLFKNLGLLIVDEEQRFGVTHKEKIKQMKEDVDVLTLSATPIPRTLHMSLVGIRDMSVLEEPPVDRQPIQTFVLEHNDEIVREAINRELNRGGQV 196          
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A2K2FGQ8_9FIRM (Transcription-repair-coupling factor n=2 Tax=Pseudoclostridium thermosuccinogenes TaxID=84032 RepID=A0A2K2FGQ8_9FIRM)

HSP 1 Score: 142 bits (359), Expect = 2.660e-37
Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
            +VGTH LL + ++F NLGLLV+DEEQ+FGV  KEKLK L T VDVLTLTATPIPRTLHMSL GIRD+S I  PP  R  V TY+M+   DV+  A+NRE+ RGGQV
Sbjct:  732 LVGTHKLLQKDIQFKNLGLLVVDEEQRFGVTHKEKLKSLKTNVDVLTLTATPIPRTLHMSLIGIRDISVIEDPPEERYPVQTYVMEYNPDVIRDAINRELARGGQV 837          
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Match: A0A1I0EBH0_9FIRM (Transcription-repair-coupling factor n=1 Tax=[Clostridium] polysaccharolyticum TaxID=29364 RepID=A0A1I0EBH0_9FIRM)

HSP 1 Score: 142 bits (359), Expect = 2.670e-37
Identity = 65/106 (61.32%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTATPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREMKRGGQV 318
            V+GTH LLS+ V+F NLGLL++DEEQ+FGV  KEK+K +   VDVLTL+ATPIPRTLHMSL GIRD+S +  PPV RQ + T++++  D++V  A+NRE+ RGGQV
Sbjct:  739 VIGTHRLLSKDVQFKNLGLLIVDEEQRFGVTHKEKIKQMKEDVDVLTLSATPIPRTLHMSLAGIRDMSVLEEPPVDRQPIQTFVLEHNDEIVREAINRELNRGGQV 844          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28252.7717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDP5_ECTSI9.760e-5691.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUP0_9PHAE3.090e-5591.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLF5_9STRA5.540e-4678.30P-loop containing nucleoside triphosphate hydrolas... [more]
UPI000D41A13D1.370e-3761.32DEAD/DEAH box helicase n=1 Tax=Enterococcus faeciu... [more]
A0A3C0VRB2_9FIRM1.430e-3764.15Transcription-repair-coupling factor n=1 Tax=Lachn... [more]
A0A3D2TY90_9FIRM1.960e-3762.26Transcription-repair-coupling factor n=6 Tax=Eubac... [more]
A0A2M9Q7T0_9BACI1.980e-3762.26Transcription-repair coupling factor (Fragment) n=... [more]
A0A349YRH1_9FIRM2.120e-3762.26Transcription-repair coupling factor (Fragment) n=... [more]
A0A2K2FGQ8_9FIRM2.660e-3766.04Transcription-repair-coupling factor n=2 Tax=Pseud... [more]
A0A1I0EBH0_9FIRM2.670e-3761.32Transcription-repair-coupling factor n=1 Tax=[Clos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28252contigH-paniculata_contig28252:2132..2833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.6
Seed ortholog evalue9.5e-47
Seed eggNOG ortholog2880.D8LDP5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsKOG0344@1,KOG0344@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.5807924-CDS-H-paniculata_contig28252:2131..23381622929857.5807924-CDS-H-paniculata_contig28252:2131..2338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28252 2132..2338 -
1691481042.2033043-CDS-H-paniculata_contig28252:2131..23381691481042.2033043-CDS-H-paniculata_contig28252:2131..2338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28252 2132..2338 -
1622929857.5923147-CDS-H-paniculata_contig28252:2722..28331622929857.5923147-CDS-H-paniculata_contig28252:2722..2833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28252 2723..2833 -
1691481042.2178357-CDS-H-paniculata_contig28252:2722..28331691481042.2178357-CDS-H-paniculata_contig28252:2722..2833Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28252 2723..2833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28252.7717.1prot_H-paniculata_contig28252.7717.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28252 2132..2833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28252.7717.1

>prot_H-paniculata_contig28252.7717.1 ID=prot_H-paniculata_contig28252.7717.1|Name=mRNA_H-paniculata_contig28252.7717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
VVGTHSLLSRKVEFPNLGLLVIDEEQKFGVNQKEKLKVLATGVDVLTLTA
TPIPRTLHMSLTGIRDLSTIFSPPVGRQNVTTYIMKGTDDVVAHALNREM
KRGGQV
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mRNA from alignment at H-paniculata_contig28252:2132..2833-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28252.7717.1 ID=mRNA_H-paniculata_contig28252.7717.1|Name=mRNA_H-paniculata_contig28252.7717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=702bp|location=Sequence derived from alignment at H-paniculata_contig28252:2132..2833- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGGGTACTCATTCCCTCCTGAGCCGAAAGGTGGAATTTCCGAACTT GGGGCTGCTGGTGATCGATGAGGAACAAAAATTCGGGGTCAACCAGAAGG AGAAATTGAAGGTAGAATCAATCTACCATGTATCGTCATCATTTTCGTTT CATTTTTTTTCTTTCTTTTTTTCTTGTTACGGTTTTATTACAACAACGTC TTTTTTGTGTTATAAAACGTATAGTGTTACTTTCCTCCTTCCTGTCCTTA TCTTGTGGTTTAATAGTAGTATAGTCAAAAGCACGGCTACCCCCATGTAT TCAAGTTCTATGAACCACGCAAAACGGGTCGTTTTGGGGGGGCGTGAGCG GGTACGCAACAATGTCCCGTTGAAACGGAGAGGGTACTCGCTCACGTCAA CGCGCCCTGTCCTACTTTGAACGCCCCGCCCTGACCCCTCCTTCCCCCGC CTGGTGTCCTGATACCTATGCTGAACATCAAACACGAACATCAAGGTGTT GGCCACGGGGGTCGATGTCTTGACGCTTACGGCGACGCCTATCCCTCGAA CACTGCACATGTCTCTGACGGGCATCCGAGACCTGAGCACGATATTTAGT CCTCCGGTGGGTCGGCAGAACGTGACTACGTACATCATGAAGGGCACGGA CGACGTCGTAGCGCACGCACTGAACCGAGAGATGAAGCGGGGGGGGCAGG TA
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Coding sequence (CDS) from alignment at H-paniculata_contig28252:2132..2833-

>mRNA_H-paniculata_contig28252.7717.1 ID=mRNA_H-paniculata_contig28252.7717.1|Name=mRNA_H-paniculata_contig28252.7717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig28252:2132..2833- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGGGTACTCATTCCCTCCTGAGCCGAAAGGTGGAATTTCCGAACTT
GGGGCTGCTGGTGATCGATGAGGAACAAAAATTCGGGGTCAACCAGAAGG
AGAAATTGAAGGTGGTGGGTACTCATTCCCTCCTGAGCCGAAAGGTGGAA
TTTCCGAACTTGGGGCTGCTGGTGATCGATGAGGAACAAAAATTCGGGGT
CAACCAGAAGGAGAAATTGAAGGTGTTGGCCACGGGGGTCGATGTCTTGA
CGCTTACGGCGACGCCTATCCCTCGAACACTGCACATGTCTCTGACGGGC
ATCCGAGACCTGAGCACGATATTTAGTCCTCCGGTGGGTCGGCAGAACGT
GACTACGTACATCATGAAGGGCACGGACGACGTCGTAGCGCACGCACTGA
ACCGAGAGATGAAGCGGGGGGGGCAGGTAGTGTTGGCCACGGGGGTCGAT
GTCTTGACGCTTACGGCGACGCCTATCCCTCGAACACTGCACATGTCTCT
GACGGGCATCCGAGACCTGAGCACGATATTTAGTCCTCCGGTGGGTCGGC
AGAACGTGACTACGTACATCATGAAGGGCACGGACGACGTCGTAGCGCAC
GCACTGAACCGAGAGATGAAGCGGGGGGGGCAGGTA
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