mRNA_H-paniculata_contig28251.7716.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28251.7716.1
Unique NamemRNA_H-paniculata_contig28251.7716.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28251.7716.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 56.6 bits (135), Expect = 5.120e-6
Identity = 46/166 (27.71%), Postives = 75/166 (45.18%), Query Frame = 1 
Query:   19 QRDGPNVYCRRCDKRGHDLYAC-PQLADEDACLTEAEIKIELEEALKIDLDEDEFIASYIASTSTTGKEEVLSVDSEGLEYCEVGEMEIWICDNGATKHMTHDSDFLFDYQEC-DGHVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVASVPLLSHHLLSLG 510
            +R    + C  C K GH +  C  +  DED  +   E +   E                 ++T      EV+  +   LE       ++WI D+GA++HMTH S+++ + Q   D HV L DG +  + G G +++Q   D + +   L  V  VP L+ +L S+G
Sbjct:  221 ERSKKEIECFYCHKLGHYIKDCRKKRRDEDQGIRSKEKQKNNE-----------------SNTEAAFSAEVIEKEILNLEV-----KDVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28251.7716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME5.120e-627.71Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28251contigH-paniculata_contig28251:434..1021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score66.2
Seed ortholog evalue1.9e-08
Seed eggNOG ortholog3712.Bo3g019830.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size588
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.547916-CDS-H-paniculata_contig28251:433..10211622929857.547916-CDS-H-paniculata_contig28251:433..1021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28251 434..1021 +
1691481042.1904702-CDS-H-paniculata_contig28251:433..10211691481042.1904702-CDS-H-paniculata_contig28251:433..1021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28251 434..1021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28251.7716.1prot_H-paniculata_contig28251.7716.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28251 434..1021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28251.7716.1

>prot_H-paniculata_contig28251.7716.1 ID=prot_H-paniculata_contig28251.7716.1|Name=mRNA_H-paniculata_contig28251.7716.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
RSKDHLQRDGPNVYCRRCDKRGHDLYACPQLADEDACLTEAEIKIELEEA
LKIDLDEDEFIASYIASTSTTGKEEVLSVDSEGLEYCEVGEMEIWICDNG
ATKHMTHDSDFLFDYQECDGHVRLADGNRLPIEGVGMLFLQFRFDSEVVL
MKLTQVASVPLLSHHLLSLGKFADFGHGYRCSREGLRINLKTGRVL
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mRNA from alignment at H-paniculata_contig28251:434..1021+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28251.7716.1 ID=mRNA_H-paniculata_contig28251.7716.1|Name=mRNA_H-paniculata_contig28251.7716.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=588bp|location=Sequence derived from alignment at H-paniculata_contig28251:434..1021+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTCCAAGGATCACCTTCAACGGGACGGCCCCAACGTGTACTGTCGGCG
ATGTGATAAGCGTGGTCACGACTTGTACGCGTGCCCCCAGCTCGCCGATG
AAGATGCTTGTTTGACTGAAGCTGAAATTAAGATTGAACTTGAAGAGGCG
CTCAAGATTGATCTGGACGAAGACGAGTTCATCGCGTCATACATCGCGTC
GACTTCCACCACAGGCAAGGAAGAGGTTTTGTCTGTGGACTCTGAGGGGT
TAGAATATTGTGAGGTGGGGGAGATGGAGATCTGGATTTGTGATAATGGT
GCAACGAAACACATGACCCATGATTCAGATTTTCTTTTTGATTACCAGGA
ATGTGATGGGCATGTACGCCTTGCAGATGGTAACCGTCTCCCGATCGAAG
GAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTTTTG
ATGAAGTTAACTCAGGTTGCGTCCGTACCACTTCTCAGTCATCACCTTCT
ATCTCTGGGGAAATTCGCGGACTTTGGTCATGGATATAGGTGTTCGCGCG
AAGGGCTCAGAATTAACCTTAAAACAGGGAGAGTTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig28251:434..1021+

>mRNA_H-paniculata_contig28251.7716.1 ID=mRNA_H-paniculata_contig28251.7716.1|Name=mRNA_H-paniculata_contig28251.7716.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig28251:434..1021+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTCCAAGGATCACCTTCAACGGGACGGCCCCAACGTGTACTGTCGGCG
ATGTGATAAGCGTGGTCACGACTTGTACGCGTGCCCCCAGCTCGCCGATG
AAGATGCTTGTTTGACTGAAGCTGAAATTAAGATTGAACTTGAAGAGGCG
CTCAAGATTGATCTGGACGAAGACGAGTTCATCGCGTCATACATCGCGTC
GACTTCCACCACAGGCAAGGAAGAGGTTTTGTCTGTGGACTCTGAGGGGT
TAGAATATTGTGAGGTGGGGGAGATGGAGATCTGGATTTGTGATAATGGT
GCAACGAAACACATGACCCATGATTCAGATTTTCTTTTTGATTACCAGGA
ATGTGATGGGCATGTACGCCTTGCAGATGGTAACCGTCTCCCGATCGAAG
GAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTTTTG
ATGAAGTTAACTCAGGTTGCGTCCGTACCACTTCTCAGTCATCACCTTCT
ATCTCTGGGGAAATTCGCGGACTTTGGTCATGGATATAGGTGTTCGCGCG
AAGGGCTCAGAATTAACCTTAAAACAGGGAGAGTTCTGCGCTCCAAGGAT
CACCTTCAACGGGACGGCCCCAACGTGTACTGTCGGCGATGTGATAAGCG
TGGTCACGACTTGTACGCGTGCCCCCAGCTCGCCGATGAAGATGCTTGTT
TGACTGAAGCTGAAATTAAGATTGAACTTGAAGAGGCGCTCAAGATTGAT
CTGGACGAAGACGAGTTCATCGCGTCATACATCGCGTCGACTTCCACCAC
AGGCAAGGAAGAGGTTTTGTCTGTGGACTCTGAGGGGTTAGAATATTGTG
AGGTGGGGGAGATGGAGATCTGGATTTGTGATAATGGTGCAACGAAACAC
ATGACCCATGATTCAGATTTTCTTTTTGATTACCAGGAATGTGATGGGCA
TGTACGCCTTGCAGATGGTAACCGTCTCCCGATCGAAGGAGTTGGCATGC
TGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTTTTGATGAAGTTAACT
CAGGTTGCGTCCGTACCACTTCTCAGTCATCACCTTCTATCTCTGGGGAA
ATTCGCGGACTTTGGTCATGGATATAGGTGTTCGCGCGAAGGGCTCAGAA
TTAACCTTAAAACAGGGAGAGTTCTG
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