mRNA_H-paniculata_contig282.7696.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig282.7696.1 vs. uniprot
Match: D8LKW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW2_ECTSI) HSP 1 Score: 521 bits (1343), Expect = 5.650e-154 Identity = 483/1348 (35.83%), Postives = 637/1348 (47.26%), Query Frame = 1
Query: 1 RYVRAALLSLVAQPGFCKKKGGYRQHLVQALVEAAYGPVPLSALIPTLQAMETGPSASDLIVEVVEKVAT----GGGGHNDEGSVNVGDAPKKAIIELLHHVVTQVVTSSAT--GRMSGKGTSTKSSAVHLTSFLMQACSALPYYMLLFSKDLLRLSDSRSCAARKLCLSALAVALEHG-------GDCCREPSLASLLHFARSDGDATIRCAAFSYAAEYLGKFLRWQLKIVLSPLHSRRLS-----------------CMCKPCNWSFSNRIFPPSSTHKIRIPGES----ARRDLSFNHE-----DWFADNDESTDQVHDQEHRNGECANLEEA--EQERAQTAQDVQSGGKEES------HNPGVEPAVPRNADALSAAGRDN---------PWAQGGILLVALSVAASALLTDDSKAVRSKALACCTRILERHGDSLGEDGHALSNL-----------GSMESVIPVLLTVEQGAWAALENLAGTNSAG---RGTANTTS------KAADAARELLCLIPYNDTGGSSRRVVDLLLCYMRCQPSRA-GATSTLEMMEAKRALRALATEKFCCGIAALLGAISSVMAIGMGEKGTMSGTYSGNDGTNGENAYQEEGEGSAF------CELLMGVDVNLTTSLLQDALDLFASAETTSDRE------STIALLHAIVLLGEATSSGDHSAAREYLTDKENNDKTSRGAGNTKPSICSVAG-------DQALRSLASHNRLFWRALEKCMGQLAGAEESSDACVNHEDGEEGGAT--SITIASRTISTGKEGILNRKSFMLDVQTELAGLLDVFRLLAGRSLLSTQSETALEALVFPAVLSKRRLIRPAVGLALVLEEPRRVLLSSLAVLQDAGFARSSTDVARACDYVHLIGVLARENASFIAAHVGRQYEAFRSTTNWGQRRNAHEDGEQPQKDTVRVDQNPEGRGDGNGDDGDNNDDYMAGVSSRESMEREIRRLQ-EASVTSDGILSCYTPFLLAIVQQRLADATERSRMLSQPAIPERSGLPKDGNDGTFPRNPTTDAIGSGSIRQELDQQIHGDDRTSLRLLETSCPPSLAMEALWALSEYAVLSPFLATTQVLPLVEALAMNTQENLLVRYAAACIFTRRELATDAIAARACALLEDPDPLLRTKVLVRLGRLMQESRIKTAHLSRFALLLVDEDERVRMAAEVLFFEHVQPRPDSVSRCVFETYFTLDTEEDVKQRVLKSLIAVSSKAVPGQSLASLGGALVRKATETDDVGAAFFLSLVPPTVRRSLEATEVCLRRGHISHMSQEAVSLLGDHFAKGFCVGGRQSIGGGGGEGSRRAVGESSTLLPKAKALEMSARI 3747
R VRA LL LVAQPGF KK+ GYRQHLV AL EAA GPVP SAL+P L+A ETGP+A+DL +E+++++ GGGG GS+ D K A+I+LLHHVV +VVTS T GR KG HL SFL+ A S LP Y L+F+KDLL L++S S ARK+ L+ LA L HG G +P+LA++L +RSDGDAT+R +AF A+++G+ V S L+ +RL + + + + ST G AR + E D A++ D E R A A + A + G+ ++ H G R A A S R PWA GG L +LS AA ALLTD SKAVR+KALAC RILE HG ++ G + N G V +L V +GA AALE LAG N+ G + + N+T KAAD AR LL L P ++ VDL++CY RC+ + G + EAKRALR +A FC I L A+S +MA +G G+ + + + + EG++F CE+L GVD SLL DAL+ +A+ + + R+ S LL + LL EAT + E N G + + + +G ++ LR+LA LFWR LE+ M + + + +G+ G + ++ G +S D +EL+ LL +F+LLA RSLLS ++ ALEALVFPA LS+RR ACDYV LIGVLARENASFIAAH+ QY A R + G+ +A E+GE DDYMAGVS+RE+M + E A SR +Q + R G + + R+++ Q + L +SCP +L EALWALSEYAVLS LA +VLPL E LA +T E+ VR AA + TRRELATD IAA AC+LLED +P LR +VLVRLG+L++ESR C+FETYFTLD EE VK++VL+ L+AV+ +A PGQ L SLG ALVRK E D AAFFLSLVPPTV S EA EV RRG ++ +SL+ HF++G G S+ + A L KA+ALEM+ARI
Sbjct: 71 RTVRAVLLPLVAQPGFAKKRKGYRQHLVHALAEAASGPVPPSALLPILRAKETGPAATDLTLEILQRIIRKADEGGGG----GSIRSNDTSKNAVIDLLHHVVAEVVTSGVTKGGRRGAKGP-----PAHLISFLVNAFSTLPEYALVFAKDLLVLTESSSSPARKMSLAILASILGHGRELGAQCGGTILDPALAAVLRLSRSDGDATVRSSAFDSVAKFIGE--------VESTLYRQRLDDDDDTSSDLDDGTPSGDVLAHQQPRNTAETLTDDDSTGSGAGGGRGVTHGARATETMEMEIAPRGDGAANHAGDADACPLSEKRPSATARTPAACTQMGAMHGATSGRQSGEGDTPVTSRQHTTGHAHRETREAGAASEGNRGQRRKAKVSAGPWAVGGALQSSLSAAAEALLTDGSKAVRAKALACLLRILEVHGGTIKPRGASCENTTGDKAGSAAAPGVSSRVETILSAVAKGALAALEPLAGDNTGGPTIQASLNSTGGGGRHRKAADTARALLVL-PCIESSP-----VDLVMCYARCRVAPGVGEGEAVGATEAKRALREIAQATFCADIRKLWKAVSVIMAADERRQGLEDGSANID--------FADTTEGASFPLSEVLCEVLAGVDSGAIASLLCDALEAYAAEDEIAPRDRDGAAASAPVLLRTLALLAEATGHAKNGV-------DERNGARQPGGSSNRERLAGRSGQHGAGDEEEQLRTLAGSQGLFWRRLEQRMEDIERDKRGEETGGRGVEGDRGQLRRRGVGVSVEQYHGGXXXXXXXRSAASDTISELSELLRMFQLLATRSLLSPENGAALEALVFPAALSRRR----------------------------------------ACDYVRLIGVLARENASFIAAHIREQYSA-RCLSRPGEEESA-ENGE---------------------------DDYMAGVSNREAMGAATTAEEGEXXXXXXXXXXXXXXXXXXXXDGDCGGARVGSRGDAQDEMQYRMAQQDGGK------------VEATVFREDVGQDRGATAAAGVSLPASSCPRALCTEALWALSEYAVLSAGLAAAEVLPLAERLASDTLEHPQVRNAAVGVLTRRELATDEIAAHACSLLEDENPCLRREVLVRLGQLIKESR-----------------------------------------CLFETYFTLDAEEAVKRKVLQRLVAVAREAAPGQGLESLGSALVRKVAEAGDSEAAFFLSLVPPTVN-SFEAAEVAHRRGQLAQSPHGTISLVAAHFSRGAQRGAGSSLA----TTASIAGRGGGAPLSKAQALEMAARI 1253
BLAST of mRNA_H-paniculata_contig282.7696.1 vs. uniprot
Match: A0A6H5KWW9_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW9_9PHAE) HSP 1 Score: 284 bits (727), Expect = 1.550e-79 Identity = 188/400 (47.00%), Postives = 238/400 (59.50%), Query Frame = 1
Query: 2674 ILSCYTPFLLAIVQQRLADATERSRMLSQPAIPERS---------------------------------GLPKDGNDGTFPRNPTTDA--IGSGSIRQELDQQIHGDDRTSLRLLETSCPPSLAMEALWALSEYAVLSPFLATTQVLPLVEALAMNTQENLLVRYAAACIFTRRELATDAIAARACALLEDPDPLLRTKVLVRLGRLMQESRIKTAHLSRFALLLVDEDERVRMAAEVLFFEHVQPRPDSVSRCVFETYFTLDTEEDVKQRVLKSLIAVSSKAVPGQSLASLGGALVRKATETDDVGAAFFLSLVPPTVRRSLEATEVCLRRGHISHMSQEAVSLLGDHFAKGFCVGGRQSI-------GGGGGEGSRRAVGESSTLLPKAKALEMSARI 3747
+LSCYTPFLLAIV++R+AD + ++ ++ G D +D T D + + R++ Q S+ L +SCP +L EAL ALSEYAVLS LA +VLPL E LA +T E+ VR AA + TRRELATD IAA AC+LLED +P +R +VLVRLG+LM+ESRIKT HLSRFALLLVD E VR AA+ +F +H+QPRPD+V RC+FET+FTLD EE VK++VL+ L+AV+ +A PGQ L SLGGALVRKA ET D AAFFLSLVPPTV S EA EV LRRG ++ + L+ HF++G G S+ G GGG L KA+ALEM+A+I
Sbjct: 1 MLSCYTPFLLAIVRRRVADTAAARNVTAEKGAATKAEXXXXXXXXXXXXXXXXASAGGAADGDCDEARVGSGGDAHDETRLHVVQQDGGKVEATDFRKDGGQGRGATTAASVSLPASSCPRALCTEALRALSEYAVLSAGLAAAEVLPLAEGLASDTLEHPQVRNAAVGVLTRRELATDEIAAHACSLLEDENPCVRREVLVRLGQLMKESRIKTGHLSRFALLLVDVSEGVRQAAQKVFIDHLQPRPDTVCRCLFETFFTLDAEEAVKRKVLQRLVAVAREAAPGQGLESLGGALVRKAAETGDSEAAFFLSLVPPTVN-SFEAAEVALRRGQLAQSPHATIFLVATHFSRGAQRGAGSSLAITASVAGRGGG-----------APLSKAQALEMAAQI 388
BLAST of mRNA_H-paniculata_contig282.7696.1 vs. uniprot
Match: A0A6H5L3C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C3_9PHAE) HSP 1 Score: 160 bits (406), Expect = 2.160e-36 Identity = 236/838 (28.16%), Postives = 322/838 (38.42%), Query Frame = 1
Query: 430 SKDLLRLSDSRSCAARKLCLSALAVALEHG-------GDCCREPSLASLLHFARSDGDATIRCAAFSYAAEYLGKF----LRWQLKI----------------VLSPLHSRRLSCMCKPCNWSFSNRIFPPSSTHKIRIPGESARRDLSFNHEDWFADNDESTDQVHDQEHRNGECANLEEAEQERAQTAQDVQSGGKEESHNPGVEPA--------VPRNADALSAAGRDN---------PWAQGGILLVALSVAASALLTDDSKAVRSKALACCTRILERHGDSLGEDG---------------------------------------------------------------------------------------------HALSNLGSMESVIPVL----LTVEQGAWAALENLAGTNSAGRGTA---NTTS------KAADAARELLCLIPYNDTGGSSRRVVDLLLCYMRCQ-PSRAGATSTLEMMEAKRALRALATEKFCCGIAALLGAISSVMAIGMGEKGTMSGTYSGNDGTNGENAYQEEGEGSAFC------ELLMGVDVNLTTSLLQDALDLFASAETTSDRESTIALLHAIVLLGEATSSGDHSAAREYLTDKENNDKTSRGAGNTKPSICSVAGDQALRSLASHNRLFWRALEKCMGQLAGAEESSDACVNHEDGEEGG----ATSITIASRTISTGKEGIL-----NRKSFMLDVQTELAGLLDVFRLLAGRSLLSTQSETALEALVFPAVLSKRRLIRPAVGLALVLEEPRRVLLSSLAVLQDAGFARSSTDVARACDYVHLIGVLARENASFIAAHVGRQY 2445
++DLL L++S S ARK+ L+ LA LEHG G +P+LA+LL ARSDGDAT+R +AF A+++G+ R +L VL+ SR + TH R E+ +++ + E AD+ D E A A + + P + P R A A S R PW GG L +LS AA ALLTD SKAVR+KALAC ILE HGD++ G H +L E +P+ + V +GA ALE LAG N G T N+T KAAD AR LL ++P + V+L++CY RC+ S G + EAKRALR +A F I LL A+S +MA +G G+ + N + + EG++F E+L GVD SLL DAL+ +A+ + + R+ G+ Y +D+E + LR+LA LFWR LE+ M + E ++ G+ G ++I G +S D +EL+ LL +F+LLA SLLS ++ ALEALVFPA LS+RRLI + S+ + F +RACDYV LIGVLARENASFIAAHV QY
Sbjct: 11 TQDLLALTESSSSPARKMSLAVLAAILEHGRELGAQCGGTILDPALAALLRLARSDGDATVRSSAFDSIAKFIGQMGTTLYRQRLHDNDDTSSDLDDGTPSGDVLAHQQSRSTAEALTDXXXXXXXXXXXRGVTHGARAT-ETMDMEIAPS-ERGAADHAGDADACPLSEKIPSATARTPMARTQMGAMHGATSGRQSRQGRTPVISPQHTSDRAHRATRGAGAPSEGNRGQRREAKVSAGPWTMGGALQSSLSAAAEALLTDGSKAVRAKALACSLLILEVHGDTIQPRGACCENTAGDEAGSAAGPGVSSRVERTLSTASSRCGGILILMAFLRSQRRLPRSSVDFASRPCMSGIAILCPSLRKRDLRQRCFPYTRGSFTWVHLSKSLVVQEPFLPLSTLCRVQVAKGALLALEALAGDNHGGSTTQASLNSTGGGGRHRKAADTARALL-ILPCVEPSP-----VELVMCYARCRVASGVGEGEAVGATEAKRALREIAQATFSADIRKLLKAVSVIMAADERRQGLEDGSANIN--------FADTTEGASFSLSEVLGEVLAGVDSGAIASLLCDALEAYAAEDEIAPRDRD----------------GETRKYSNYNSDEE----------------------EQLRTLAGSQGLFWRRLEQRMEDIERDERREESGWQGAQGDRGQLRRRGLGLSIEQYHGGGGXXXXXXXXXHGHRSAAPDAVSELSELLRIFQLLATYSLLSAKNSAALEALVFPAALSRRRLI----------------VSRSIDIHNSFAFLVLVWG-SRACDYVRLIGVLARENASFIAAHVREQY 777 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig282.7696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig282.7696.1 >prot_H-paniculata_contig282.7696.1 ID=prot_H-paniculata_contig282.7696.1|Name=mRNA_H-paniculata_contig282.7696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1502bp METGPSASDLIVEVVEKVATGGGGHNDEGSVNVGDAPKKAIIELLHHVVTback to top mRNA from alignment at H-paniculata_contig282:13592..27955+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig282.7696.1 ID=mRNA_H-paniculata_contig282.7696.1|Name=mRNA_H-paniculata_contig282.7696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14364bp|location=Sequence derived from alignment at H-paniculata_contig282:13592..27955+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig282:13592..27955+ >mRNA_H-paniculata_contig282.7696.1 ID=mRNA_H-paniculata_contig282.7696.1|Name=mRNA_H-paniculata_contig282.7696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9012bp|location=Sequence derived from alignment at H-paniculata_contig282:13592..27955+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |