mRNA_H-paniculata_contig28170.7689.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28170.7689.1
Unique NamemRNA_H-paniculata_contig28170.7689.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA)

HSP 1 Score: 166 bits (419), Expect = 2.340e-45
Identity = 93/242 (38.43%), Postives = 147/242 (60.74%), Query Frame = 1
Query:    1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFS--LSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 717
            P +  EA++   A KW+ A E E  +L+    W   D   L  G+KAI  KW+FK K K DGS+ +YKA+LVA+G+SQ  G D  ET  PVA+ +++R + SLA +H+ EL+ MD++ A+LN+ ++E++++++P   +   +P   +      KSLY L+Q  R WN T+D F++ +G  +S  D C+Y    +  E  +LV++Y DDL++A    E +   K  +S+RF++ DLG LS  L
Sbjct:   45 PSTYQEAMESDNASKWKDACESEIKSLLDNKTW---DVVELPQGRKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQD--EDIILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLGPLSYCL 281          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: I1PQ20_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1PQ20_ORYGL)

HSP 1 Score: 161 bits (408), Expect = 6.020e-42
Identity = 87/241 (36.10%), Postives = 143/241 (59.34%), Query Frame = 1
Query:    1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWE-SEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 717
            PKS +EA   P+A+ W+ A+  E  +++  G WE +E P     G K +  KW+FK K + DG++ +YKA+LVA+G++Q +GED F+T +PVAR++T+R + SLA  H   +  MD+  A+LN  ++EE+++  P  F +  +  ++    +KSLY L+Q  + W+   D  L   G   +  D C+Y+    GG   +++ +Y DD+LI G   + ++E K  +SQ F +KDLG    +L
Sbjct:  184 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP----YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV-CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYR--HGGGEGVILCLYVDDILIFGTNLDVINEVKSFLSQNFDMKDLGVADVIL 417          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 160 bits (406), Expect = 9.410e-42
Identity = 95/235 (40.43%), Postives = 134/235 (57.02%), Query Frame = 1
Query:   22 LKGPEAEKWRAAMEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACV--KSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIA-GRREKVDEFKHNISQRFRVKDLGSLSRVL 717
            +KGPEAE W+AAM++E  +L + G W+  D   L  G+KA+  KWIFK K  EDG+V RYKA+LVAQGF+Q  G D  E  APV R  T R + ++A++    ++  D+  AYLN  +EE +F++ PP +    E     A C   KSLY L+Q    WN   D  L  M   +S  D CLY   +  G T L++  Y DD++IA    E+ +E    +++ F+V  LG +S  L
Sbjct:    1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGY----EDENRDAVCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRNGKGYTYLVI--YVDDMVIACNDDEEYEEIIKTLNRHFKVTSLGDISHFL 226          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: I1R5L4_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=I1R5L4_ORYGL)

HSP 1 Score: 155 bits (393), Expect = 1.210e-41
Identity = 85/241 (35.27%), Postives = 140/241 (58.09%), Query Frame = 1
Query:    1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWE-SEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 717
            PKS +EA    +A+ W+  +  E  +++  G WE +E P     G K +  KW+FK K + DG++ +YKA+LVA+G++Q +GED F+T +PVAR++T+R + SLA  H   +  MD+   +LN  ++EE+++  P  F +  +  ++    +KSLY L+Q  + W+   D  L   G   +  D C+Y+    GG   +++ +Y DD+LI G   E ++E K  +SQ F +KDLG    +L
Sbjct:   24 PKSISEAYASLDADYWKEVVRSEMDSIIANGTWEVTERP----YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFLNGELDEEIYMDQPDGFVVEGQEGKV-CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYR--HGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVIL 257          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: Q2R4Q7_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2R4Q7_ORYSJ)

HSP 1 Score: 164 bits (415), Expect = 1.250e-41
Identity = 89/241 (36.93%), Postives = 143/241 (59.34%), Query Frame = 1
Query:    1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWE-SEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 717
            PKS +EA   P+A+ W+ A+  E  +++  G WE +E P     G K +  KW+FK K + DG++ +YKAQLVA+G++Q +GED F+T +PVAR++T+R + SLA  H   +  MD+  A+LN  ++EE+++  P  F +  +  ++    +KSLY L+Q  + W+   D  L   G   +  D C+Y+    GG   +++ +Y DD+LI G   E ++E K  +SQ F +KDLG    +L
Sbjct:  724 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP----YGCKPVGCKWVFKKKLRPDGTIEKYKAQLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV-CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYR--HGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVIL 957          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: Q10CN4_ORYSJ (Retrotransposon protein, putative, unclassified, expressed n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10CN4_ORYSJ)

HSP 1 Score: 164 bits (414), Expect = 1.760e-41
Identity = 89/241 (36.93%), Postives = 143/241 (59.34%), Query Frame = 1
Query:    1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWE-SEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 717
            PKS +EA   P+A+ W+ A+  E  +++  G WE +E P     G K +  KW+FK K + DG++ +YKA+LVA+G++Q +GED F+T +PVAR++T+R + SLA  H   +  MD+  A+LN  ++EE+++  P  F L  +  ++    +KSLY L+Q  + W+   D  L   G   +  D C+Y+    GG   +++ +Y DD+LI G   E ++E K  +SQ F +KDLG    +L
Sbjct:  791 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP----YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKV-CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYR--HGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVIL 1024          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A182GDL1_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDL1_AEDAL)

HSP 1 Score: 154 bits (390), Expect = 1.910e-41
Identity = 88/240 (36.67%), Postives = 145/240 (60.42%), Query Frame = 1
Query:    1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGR-REKVDEFKHNISQRFRVKDLGSLSRVL 717
            P S  EA++  E++ W+AAM+EE+ +L++ G W   +   L AG+KAI +KW+FK K    G+V ++KA+LVAQGFSQ  G D     APVA  +TLRT+ S+A +   ++  +D+ +AYL+  ++EEL+++ P  F    E  +L     +SLY L+QG + WN+T+   L  +G  +S  D CL+  S  G +  LL+  Y DD+++A    E++D  +  + ++ ++  LG ++  L
Sbjct:    9 PSSYEEAVRSSESDLWKAAMQEEYDSLMENGTWVLAE---LPAGRKAIGSKWVFKKKEDSAGNVCKFKARLVAQGFSQQFGVDYDSVFAPVAAQTTLRTLLSVAGKKKMKVRHLDVKSAYLHGQLKEELYMQQPKGFVRRGEE-KLVCRLQRSLYGLKQGAKVWNDTICAILGEIGFHQSRADPCLFSKSVSGRQIYLLI--YVDDIIVASEVEEEIDPIESQLKKKVKLSSLGEVNYFL 242          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: Q53NX4_ORYSJ (Retrotransposon protein, putative, Ty1-copia sub-class n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53NX4_ORYSJ)

HSP 1 Score: 162 bits (410), Expect = 2.300e-41
Identity = 88/241 (36.51%), Postives = 143/241 (59.34%), Query Frame = 1
Query:    1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWE-SEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 717
            PKS +EA   P+A+ W+ A+  E  +++  G WE +E P     G K +  KW+FK K + DG++ +YKA+LVA+G++Q +GED F+T +PVAR++T+R + SLA  H   +  MD+  A+LN  ++EE+++  P  F +  +  ++    +KSLY L+Q  + W+   D  L   G   +  D C+Y+    GG   +++ +Y DD+LI G   E ++E K  +SQ F +KDLG    +L
Sbjct:  184 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP----YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV-CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFVVNEADKCVYYR--HGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVIL 417          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A0A9W6P7_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9W6P7_LYGHE)

HSP 1 Score: 163 bits (412), Expect = 3.110e-41
Identity = 94/240 (39.17%), Postives = 145/240 (60.42%), Query Frame = 1
Query:    1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDL-LIAGRREKVDEFKHNISQRFRVKDLGSLSRVL 717
            PK+  +A+ GP+ + W+ A+EEE  +L     WE  D   L  G+ AI  KW+FK K   DGSV RYKA+LVAQGF+Q  G D  ET +PV  + T+R    LA E+++ +  MD+  AYLN  ++EE++++LP    ++ E+ +     +KSLY L+Q  R W  TL+  L+  G+ +S ++SC+YF   +G     ++ VY DDL LI+   E + + K  + + F +KDLG+L+ +L
Sbjct:  669 PKTFKQAMDGPDHKLWKEAVEEELTSLKNMNVWELTD---LPPGKSAIGCKWVFKIKYLADGSVERYKARLVAQGFTQEYGVDYNETYSPVVSLPTIRLFLKLAVENNWLVHQMDVKTAYLNGELKEEIYMRLPEGI-ITEESEKKVCRLLKSLYGLKQSGRAWYETLERKLLEGGMKKSKSESCIYFEKSDG--VIKIILVYVDDLILISSNLEAMSDMKIMLGRNFEMKDLGNLNYIL 902          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: Q2RAX6_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=4 Tax=cellular organisms TaxID=131567 RepID=Q2RAX6_ORYSJ)

HSP 1 Score: 163 bits (412), Expect = 3.430e-41
Identity = 88/241 (36.51%), Postives = 143/241 (59.34%), Query Frame = 1
Query:    1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWE-SEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 717
            PKS +EA   P+A+ W+ A+  E  +++  G WE +E P     G K +  KW+FK K + DG++ +YKA+LVA+G++Q +GED F+T +PVAR++T+R + SLA  H   +  MD+  A+LN  ++EE+++  P  F +  +  ++    +KSLY L+Q  + W+   D  L   G   +  D C+Y+    GG   +++ +Y DD+LI G   E ++E K  +SQ F +KDLG    +L
Sbjct:  986 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP----YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV-CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFGVNEADKCVYYR--HGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVIL 1219          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0WHK2_9STRA2.340e-4538.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
I1PQ20_ORYGL6.020e-4236.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182GIT5_AEDAL9.410e-4240.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
I1R5L4_ORYGL1.210e-4135.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q2R4Q7_ORYSJ1.250e-4136.93Retrotransposon protein, putative, Ty1-copia subcl... [more]
Q10CN4_ORYSJ1.760e-4136.93Retrotransposon protein, putative, unclassified, e... [more]
A0A182GDL1_AEDAL1.910e-4136.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q53NX4_ORYSJ2.300e-4136.51Retrotransposon protein, putative, Ty1-copia sub-c... [more]
A0A0A9W6P7_LYGHE3.110e-4139.17Retrovirus-related Pol polyprotein from transposon... [more]
Q2RAX6_ORYSJ3.430e-4136.51Retrotransposon protein, putative, Ty1-copia subcl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28170contigH-paniculata_contig28170:2015..3054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score159.5
Seed ortholog evalue1.9e-36
Seed eggNOG ortholog15368.BRADI3G49960.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size953
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28170.7689.1prot_H-paniculata_contig28170.7689.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28170 2072..2737 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929854.6481762-UTR-H-paniculata_contig28170:2014..20711622929854.6481762-UTR-H-paniculata_contig28170:2014..2071Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28170 2015..2071 +
1691481040.9959464-UTR-H-paniculata_contig28170:2014..20711691481040.9959464-UTR-H-paniculata_contig28170:2014..2071Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28170 2015..2071 +
1622929854.6818821-UTR-H-paniculata_contig28170:2737..28791622929854.6818821-UTR-H-paniculata_contig28170:2737..2879Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28170 2738..2879 +
1691481041.0147069-UTR-H-paniculata_contig28170:2737..28791691481041.0147069-UTR-H-paniculata_contig28170:2737..2879Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28170 2738..2879 +
1622929854.6985013-UTR-H-paniculata_contig28170:2966..30541622929854.6985013-UTR-H-paniculata_contig28170:2966..3054Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28170 2967..3054 +
1691481041.022365-UTR-H-paniculata_contig28170:2966..30541691481041.022365-UTR-H-paniculata_contig28170:2966..3054Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28170 2967..3054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929854.665136-CDS-H-paniculata_contig28170:2071..27371622929854.665136-CDS-H-paniculata_contig28170:2071..2737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28170 2072..2737 +
1691481041.006419-CDS-H-paniculata_contig28170:2071..27371691481041.006419-CDS-H-paniculata_contig28170:2071..2737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28170 2072..2737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28170.7689.1

>prot_H-paniculata_contig28170.7689.1 ID=prot_H-paniculata_contig28170.7689.1|Name=mRNA_H-paniculata_contig28170.7689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=222bp
MEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKA
QLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAA
YLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLD
DFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRREKVDEF
KHNISQRFRVKDLGSLSRVLK*
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mRNA from alignment at H-paniculata_contig28170:2015..3054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28170.7689.1 ID=mRNA_H-paniculata_contig28170.7689.1|Name=mRNA_H-paniculata_contig28170.7689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1040bp|location=Sequence derived from alignment at H-paniculata_contig28170:2015..3054+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAAATCCGCGGCAGAAGCATTAAAGGGTCCAGAGGCGGAAAAATGGCG CGCGGCAATGGAGGAAGAATGGGGAGCGTTGGTGAAAAAGGGGAGATGGG AAAGCGAAGACCCGGGGCGGTTAATGGCAGGGCAGAAGGCGATTCGTACG AAATGGATTTTCAAGGGGAAACCGAAGGAGGACGGAAGCGTGGCACGCTA CAAAGCCCAACTGGTTGCTCAAGGTTTTTCACAGGTGAAGGGTGAAGACT CCTTTGAAACTAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTACTGTT TTTAGCCTGGCCACCGAACACGATTTCGAATTAGAAGGCATGGACTTAGA TGCAGCGTATTTAAACGCTCCGGTAGAAGAAGAGCTGTTTGTTAAGCTAC CCCCGAGTTTTTCCCTTTCTCCCGAGACATATCGTTTGTCCGCCGCCTGC GTAAAAAGCCTGTACGCCCTCGAGCAGGGTGACCGTAACTGGAATAACAC TCTTGACGATTTTCTTGTTGGGATGGGACTCGACCGTTCCACTACCGACT CATGCTTGTACTTTTCCAGCGACGAAGGGGGAGAGACAAACCTTCTAGTG GCGGTGTATGGTGACGACCTGCTCATTGCTGGTCGTCGTGAGAAAGTAGA CGAGTTCAAGCATAACATAAGTCAGCGTTTTAGGGTAAAAGACTTGGGCT CTCTCTCACGCGTGTTGAAATAGATGTACGACGTGACGGCCCCAATGGTA CCACAACCATCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAAATGTAC GGTTTTCACGAGTGTCGAGGGATACCCACCCCTGTAGAGGGAAAAGTGAA GATATCGGCACCCGAGTCGATCGACAAGCCCTCCGAACCGAAGTCACTTG GAGCTGTTCTGTCGGACATTGACGCAGGAGTACAAGAAAGCAGCGGAGGG AGAAGGGGCAATTCAACTGAATACAGAGGCATGGTAGAATCACTCATGTA CGCCTCGACAGGAACTAGACCTGATATAGCATACGTGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig28170:2015..3054+

>mRNA_H-paniculata_contig28170.7689.1 ID=mRNA_H-paniculata_contig28170.7689.1|Name=mRNA_H-paniculata_contig28170.7689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at H-paniculata_contig28170:2015..3054+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGAATGGGGAGCGTTGGTGAAAAAGGGGAGATGGGAAAGCGA
AGACCCGGGGCGGTTAATGGCAGGGCAGAAGGCGATTCGTACGAAATGGA
TTTTCAAGGGGAAACCGAAGGAGGACGGAAGCGTGGCACGCTACAAAGCC
CAACTGGTTGCTCAAGGTTTTTCACAGGTGAAGGGTGAAGACTCCTTTGA
AACTAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTACTGTTTTTAGCC
TGGCCACCGAACACGATTTCGAATTAGAAGGCATGGACTTAGATGCAGCG
TATTTAAACGCTCCGGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCGAG
TTTTTCCCTTTCTCCCGAGACATATCGTTTGTCCGCCGCCTGCGTAAAAA
GCCTGTACGCCCTCGAGCAGGGTGACCGTAACTGGAATAACACTCTTGAC
GATTTTCTTGTTGGGATGGGACTCGACCGTTCCACTACCGACTCATGCTT
GTACTTTTCCAGCGACGAAGGGGGAGAGACAAACCTTCTAGTGGCGGTGT
ATGGTGACGACCTGCTCATTGCTGGTCGTCGTGAGAAAGTAGACGAGTTC
AAGCATAACATAAGTCAGCGTTTTAGGGTAAAAGACTTGGGCTCTCTCTC
ACGCGTGTTGAAATAGATGGAGGAAGAATGGGGAGCGTTGGTGAAAAAGG
GGAGATGGGAAAGCGAAGACCCGGGGCGGTTAATGGCAGGGCAGAAGGCG
ATTCGTACGAAATGGATTTTCAAGGGGAAACCGAAGGAGGACGGAAGCGT
GGCACGCTACAAAGCCCAACTGGTTGCTCAAGGTTTTTCACAGGTGAAGG
GTGAAGACTCCTTTGAAACTAGTGCCCCCGTAGCTCGCATGTCGACGTTA
CGTACTGTTTTTAGCCTGGCCACCGAACACGATTTCGAATTAGAAGGCAT
GGACTTAGATGCAGCGTATTTAAACGCTCCGGTAGAAGAAGAGCTGTTTG
TTAAGCTACCCCCGAGTTTTTCCCTTTCTCCCGAGACATATCGTTTGTCC
GCCGCCTGCGTAAAAAGCCTGTACGCCCTCGAGCAGGGTGACCGTAACTG
GAATAACACTCTTGACGATTTTCTTGTTGGGATGGGACTCGACCGTTCCA
CTACCGACTCATGCTTGTACTTTTCCAGCGACGAAGGGGGAGAGACAAAC
CTTCTAGTGGCGGTGTATGGTGACGACCTGCTCATTGCTGGTCGTCGTGA
GAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCGTTTTAGGGTAAAAG
ACTTGGGCTCTCTCTCACGCGTGTTGAAATAG
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