mRNA_H-paniculata_contig28170.7689.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA) HSP 1 Score: 166 bits (419), Expect = 2.340e-45 Identity = 93/242 (38.43%), Postives = 147/242 (60.74%), Query Frame = 1
Query: 1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFS--LSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 717
P + EA++ A KW+ A E E +L+ W D L G+KAI KW+FK K K DGS+ +YKA+LVA+G+SQ G D ET PVA+ +++R + SLA +H+ EL+ MD++ A+LN+ ++E++++++P + +P + KSLY L+Q R WN T+D F++ +G +S D C+Y + E +LV++Y DDL++A E + K +S+RF++ DLG LS L
Sbjct: 45 PSTYQEAMESDNASKWKDACESEIKSLLDNKTW---DVVELPQGRKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQD--EDIILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLGPLSYCL 281
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: I1PQ20_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1PQ20_ORYGL) HSP 1 Score: 161 bits (408), Expect = 6.020e-42 Identity = 87/241 (36.10%), Postives = 143/241 (59.34%), Query Frame = 1
Query: 1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWE-SEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 717
PKS +EA P+A+ W+ A+ E +++ G WE +E P G K + KW+FK K + DG++ +YKA+LVA+G++Q +GED F+T +PVAR++T+R + SLA H + MD+ A+LN ++EE+++ P F + + ++ +KSLY L+Q + W+ D L G + D C+Y+ GG +++ +Y DD+LI G + ++E K +SQ F +KDLG +L
Sbjct: 184 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP----YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV-CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYR--HGGGEGVILCLYVDDILIFGTNLDVINEVKSFLSQNFDMKDLGVADVIL 417
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL) HSP 1 Score: 160 bits (406), Expect = 9.410e-42 Identity = 95/235 (40.43%), Postives = 134/235 (57.02%), Query Frame = 1
Query: 22 LKGPEAEKWRAAMEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACV--KSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIA-GRREKVDEFKHNISQRFRVKDLGSLSRVL 717
+KGPEAE W+AAM++E +L + G W+ D L G+KA+ KWIFK K EDG+V RYKA+LVAQGF+Q G D E APV R T R + ++A++ ++ D+ AYLN +EE +F++ PP + E A C KSLY L+Q WN D L M +S D CLY + G T L++ Y DD++IA E+ +E +++ F+V LG +S L
Sbjct: 1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGY----EDENRDAVCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRNGKGYTYLVI--YVDDMVIACNDDEEYEEIIKTLNRHFKVTSLGDISHFL 226
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: I1R5L4_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=I1R5L4_ORYGL) HSP 1 Score: 155 bits (393), Expect = 1.210e-41 Identity = 85/241 (35.27%), Postives = 140/241 (58.09%), Query Frame = 1
Query: 1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWE-SEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 717
PKS +EA +A+ W+ + E +++ G WE +E P G K + KW+FK K + DG++ +YKA+LVA+G++Q +GED F+T +PVAR++T+R + SLA H + MD+ +LN ++EE+++ P F + + ++ +KSLY L+Q + W+ D L G + D C+Y+ GG +++ +Y DD+LI G E ++E K +SQ F +KDLG +L
Sbjct: 24 PKSISEAYASLDADYWKEVVRSEMDSIIANGTWEVTERP----YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFLNGELDEEIYMDQPDGFVVEGQEGKV-CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYR--HGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVIL 257
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: Q2R4Q7_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2R4Q7_ORYSJ) HSP 1 Score: 164 bits (415), Expect = 1.250e-41 Identity = 89/241 (36.93%), Postives = 143/241 (59.34%), Query Frame = 1
Query: 1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWE-SEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 717
PKS +EA P+A+ W+ A+ E +++ G WE +E P G K + KW+FK K + DG++ +YKAQLVA+G++Q +GED F+T +PVAR++T+R + SLA H + MD+ A+LN ++EE+++ P F + + ++ +KSLY L+Q + W+ D L G + D C+Y+ GG +++ +Y DD+LI G E ++E K +SQ F +KDLG +L
Sbjct: 724 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP----YGCKPVGCKWVFKKKLRPDGTIEKYKAQLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV-CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYR--HGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVIL 957
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: Q10CN4_ORYSJ (Retrotransposon protein, putative, unclassified, expressed n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10CN4_ORYSJ) HSP 1 Score: 164 bits (414), Expect = 1.760e-41 Identity = 89/241 (36.93%), Postives = 143/241 (59.34%), Query Frame = 1
Query: 1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWE-SEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 717
PKS +EA P+A+ W+ A+ E +++ G WE +E P G K + KW+FK K + DG++ +YKA+LVA+G++Q +GED F+T +PVAR++T+R + SLA H + MD+ A+LN ++EE+++ P F L + ++ +KSLY L+Q + W+ D L G + D C+Y+ GG +++ +Y DD+LI G E ++E K +SQ F +KDLG +L
Sbjct: 791 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP----YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKV-CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYR--HGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVIL 1024
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A182GDL1_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDL1_AEDAL) HSP 1 Score: 154 bits (390), Expect = 1.910e-41 Identity = 88/240 (36.67%), Postives = 145/240 (60.42%), Query Frame = 1
Query: 1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGR-REKVDEFKHNISQRFRVKDLGSLSRVL 717
P S EA++ E++ W+AAM+EE+ +L++ G W + L AG+KAI +KW+FK K G+V ++KA+LVAQGFSQ G D APVA +TLRT+ S+A + ++ +D+ +AYL+ ++EEL+++ P F E +L +SLY L+QG + WN+T+ L +G +S D CL+ S G + LL+ Y DD+++A E++D + + ++ ++ LG ++ L
Sbjct: 9 PSSYEEAVRSSESDLWKAAMQEEYDSLMENGTWVLAE---LPAGRKAIGSKWVFKKKEDSAGNVCKFKARLVAQGFSQQFGVDYDSVFAPVAAQTTLRTLLSVAGKKKMKVRHLDVKSAYLHGQLKEELYMQQPKGFVRRGEE-KLVCRLQRSLYGLKQGAKVWNDTICAILGEIGFHQSRADPCLFSKSVSGRQIYLLI--YVDDIIVASEVEEEIDPIESQLKKKVKLSSLGEVNYFL 242
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: Q53NX4_ORYSJ (Retrotransposon protein, putative, Ty1-copia sub-class n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53NX4_ORYSJ) HSP 1 Score: 162 bits (410), Expect = 2.300e-41 Identity = 88/241 (36.51%), Postives = 143/241 (59.34%), Query Frame = 1
Query: 1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWE-SEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 717
PKS +EA P+A+ W+ A+ E +++ G WE +E P G K + KW+FK K + DG++ +YKA+LVA+G++Q +GED F+T +PVAR++T+R + SLA H + MD+ A+LN ++EE+++ P F + + ++ +KSLY L+Q + W+ D L G + D C+Y+ GG +++ +Y DD+LI G E ++E K +SQ F +KDLG +L
Sbjct: 184 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP----YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV-CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFVVNEADKCVYYR--HGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVIL 417
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A0A9W6P7_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9W6P7_LYGHE) HSP 1 Score: 163 bits (412), Expect = 3.110e-41 Identity = 94/240 (39.17%), Postives = 145/240 (60.42%), Query Frame = 1
Query: 1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDL-LIAGRREKVDEFKHNISQRFRVKDLGSLSRVL 717
PK+ +A+ GP+ + W+ A+EEE +L WE D L G+ AI KW+FK K DGSV RYKA+LVAQGF+Q G D ET +PV + T+R LA E+++ + MD+ AYLN ++EE++++LP ++ E+ + +KSLY L+Q R W TL+ L+ G+ +S ++SC+YF +G ++ VY DDL LI+ E + + K + + F +KDLG+L+ +L
Sbjct: 669 PKTFKQAMDGPDHKLWKEAVEEELTSLKNMNVWELTD---LPPGKSAIGCKWVFKIKYLADGSVERYKARLVAQGFTQEYGVDYNETYSPVVSLPTIRLFLKLAVENNWLVHQMDVKTAYLNGELKEEIYMRLPEGI-ITEESEKKVCRLLKSLYGLKQSGRAWYETLERKLLEGGMKKSKSESCIYFEKSDG--VIKIILVYVDDLILISSNLEAMSDMKIMLGRNFEMKDLGNLNYIL 902
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: Q2RAX6_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=4 Tax=cellular organisms TaxID=131567 RepID=Q2RAX6_ORYSJ) HSP 1 Score: 163 bits (412), Expect = 3.430e-41 Identity = 88/241 (36.51%), Postives = 143/241 (59.34%), Query Frame = 1
Query: 1 PKSAAEALKGPEAEKWRAAMEEEWGALVKKGRWE-SEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 717
PKS +EA P+A+ W+ A+ E +++ G WE +E P G K + KW+FK K + DG++ +YKA+LVA+G++Q +GED F+T +PVAR++T+R + SLA H + MD+ A+LN ++EE+++ P F + + ++ +KSLY L+Q + W+ D L G + D C+Y+ GG +++ +Y DD+LI G E ++E K +SQ F +KDLG +L
Sbjct: 986 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP----YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV-CKLLKSLYGLKQAPKQWHEKFDKTLTSAGFGVNEADKCVYYR--HGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVIL 1219 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig28170.7689.1 >prot_H-paniculata_contig28170.7689.1 ID=prot_H-paniculata_contig28170.7689.1|Name=mRNA_H-paniculata_contig28170.7689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=222bp MEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAback to top mRNA from alignment at H-paniculata_contig28170:2015..3054+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig28170.7689.1 ID=mRNA_H-paniculata_contig28170.7689.1|Name=mRNA_H-paniculata_contig28170.7689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1040bp|location=Sequence derived from alignment at H-paniculata_contig28170:2015..3054+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig28170:2015..3054+ >mRNA_H-paniculata_contig28170.7689.1 ID=mRNA_H-paniculata_contig28170.7689.1|Name=mRNA_H-paniculata_contig28170.7689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at H-paniculata_contig28170:2015..3054+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |