mRNA_H-paniculata_contig28098.7672.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig28098.7672.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 99.4 bits (246), Expect = 2.810e-22 Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1
Query: 1 NRAPTRPYNGGTPYEKWHGETPKLDHLRVFGCTAYVMFQR----KLDNKAWAGVFLGYDEDSASYRVYNPENKSVQLSRNVRFDE 243
N PT+ G TP+E WHG TP ++HL+VFGC Y + KLD K+ G+FLGY S YR+YNP K + +SRNV+FDE
Sbjct: 596 NLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680
BLAST of mRNA_H-paniculata_contig28098.7672.1 vs. uniprot
Match: A0A151S498_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S498_CAJCA) HSP 1 Score: 93.6 bits (231), Expect = 8.630e-21 Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 1
Query: 1 NRAPTRPYNGGTPYEKWHGETPKLDHLRVFGC---TAYVMFQRKLDNKAWAGVFLGYDEDSASYRVYNPENKSVQLSRNVRFDE 243
N PT+ G P+E WHG P ++HL+VFGC + M + KLD K+ GVFLGY+ +S YR+YNP +K + +SRNV+FDE
Sbjct: 16 NLLPTKALKGKIPFEAWHGRKPSMEHLKVFGCVLCSCSRMKRDKLDQKSKVGVFLGYNNNSKGYRIYNPTSKKILVSRNVKFDE 99
BLAST of mRNA_H-paniculata_contig28098.7672.1 vs. uniprot
Match: Q7G6A8_ORYSJ (Os10g0130700 protein n=3 Tax=Oryza sativa TaxID=4530 RepID=Q7G6A8_ORYSJ) HSP 1 Score: 92.4 bits (228), Expect = 7.630e-20 Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 1 NRAPTRPYNGGTPYEKWHGETPKLDHLRVFGCTAYVMFQ----RKLDNKAWAGVFLGYDEDSASYRVYNPENKSVQLSRNVRFDE 243
NR+PT+ NG TP+E WHG P ++HLRVFGC YV RKLD++ VF+GY++ S +YR+Y+P + V +SR+V FDE
Sbjct: 717 NRSPTKALNGVTPHEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVARRVCVSRDVVFDE 801
BLAST of mRNA_H-paniculata_contig28098.7672.1 vs. uniprot
Match: Q7XTU6_ORYSJ (OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XTU6_ORYSJ) HSP 1 Score: 92.0 bits (227), Expect = 1.040e-19 Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 1 NRAPTRPYNGGTPYEKWHGETPKLDHLRVFGCTAYVMFQ----RKLDNKAWAGVFLGYDEDSASYRVYNPENKSVQLSRNVRFDE 243
NR+PT+ +G TPYE WHG P ++HLRVFGC YV RKLD++ VF+GY++ S +YR+Y+P + V +SR+V FDE
Sbjct: 717 NRSPTKALDGVTPYEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVAQRVCVSRDVVFDE 801
BLAST of mRNA_H-paniculata_contig28098.7672.1 vs. uniprot
Match: A0A6G1CEI4_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1CEI4_9ORYZ) HSP 1 Score: 87.0 bits (214), Expect = 1.220e-19 Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 1
Query: 1 NRAPTRPYNGGTPYEKWHGETPKLDHLRVFGCTAYVMFQR----KLDNKAWAGVFLGYDEDSASYRVYNPENKSVQLSRNVRFDEEDF 252
NR+PT+ +G PYE WHG P ++HLRVFGC +V R KLD++ VF+GY++ + +Y++Y+P + V +S NV FDE F
Sbjct: 38 NRSPTKSLDGVMPYEAWHGRRPMVEHLRVFGCVGHVKTARPNLRKLDDRGTRMVFIGYEDGTKAYQMYDPVARRVYVSHNVVFDETAF 125
BLAST of mRNA_H-paniculata_contig28098.7672.1 vs. uniprot
Match: Q60DG5_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q60DG5_ORYSJ) HSP 1 Score: 91.3 bits (225), Expect = 1.920e-19 Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 1 NRAPTRPYNGGTPYEKWHGETPKLDHLRVFGCTAYVMFQ----RKLDNKAWAGVFLGYDEDSASYRVYNPENKSVQLSRNVRFDE 243
NR+PT+ +G TPYE WHG P ++HL+VFGC YV RKLD++ VF+GY++ S +YR+Y+P ++ +SR+V FDE
Sbjct: 380 NRSPTKSLDGVTPYEAWHGRRPSVEHLKVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVSRRFYVSRDVVFDE 464
BLAST of mRNA_H-paniculata_contig28098.7672.1 vs. uniprot
Match: A0A177U095_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U095_9BASI) HSP 1 Score: 90.9 bits (224), Expect = 2.630e-19 Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 1 NRAPTRPYNGGTPYEKWHGETPKLDHLRVFGCTAYVMFQRK-----LDNKAWAGVFLGYDEDSASYRVYNPENKSVQLSRNVRFDEE 246
N P+RP G TP+E W+G P++DHLR+FGC A+VM K L +A GVF+GYD+ S YRV+ P+ ++ +SRNV F E+
Sbjct: 356 NHRPSRPLGGKTPFELWYGTPPRIDHLRIFGCLAFVMLPDKAREHSLSARARVGVFIGYDKYSKGYRVHFPDTGALAISRNVDFHED 442
BLAST of mRNA_H-paniculata_contig28098.7672.1 vs. uniprot
Match: A0A540MM95_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MM95_MALBA) HSP 1 Score: 87.8 bits (216), Expect = 2.790e-18 Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 1 NRAPTRPYNGGTPYEKWHGETPKLDHLRVFGCTAYVMF----QRKLDNKAWAGVFLGYDEDSASYRVYNPENKSVQLSRNVRFDEED 249
NR+PTR G TP E W G P + HLRVFG A+V + KLD+K+ +F+GYD +S Y++YNP N+ + +SR+V FDEE+
Sbjct: 76 NRSPTRSVWGKTPQEAWSGRKPGISHLRVFGSIAHVHVPDERRAKLDDKSEKFIFIGYDSNSKGYKLYNPNNRKMVISRDVTFDEEE 162
BLAST of mRNA_H-paniculata_contig28098.7672.1 vs. uniprot
Match: A0A2V8RS33_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8RS33_9BACT) HSP 1 Score: 87.8 bits (216), Expect = 3.140e-18 Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 1 NRAPTRPYNGGTPYEKWHGETPKLDHLRVFGCTAYVMF-----QRKLDNKAWAGVFLGYDEDSASYRVYNPENKSVQLSRNVRFDEEDFVT 258
NR P+ TPYE W+G P LDHLR+FGCTA+V ++KLD+K+ F+GY D Y+VY+P N +R++ FDEE F T
Sbjct: 573 NRIPSASIGNRTPYELWYGRKPSLDHLRIFGCTAWVHVPKESGRQKLDDKSKKMCFVGYISDKGIYKVYDPTNGRFSTARDIIFDEEKFFT 663
BLAST of mRNA_H-paniculata_contig28098.7672.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY) HSP 1 Score: 87.8 bits (216), Expect = 3.200e-18 Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 1 NRAPTRPYNGGTPYEKWHGETPKLDHLRVFGCTAYV----MFQRKLDNKAWAGVFLGYDEDSASYRVYNPENKSVQLSRNVRFDEEDF 252
NR PT+ TP E W G+ P + HL++FGC AY ++KLD++ +F+GYDE S +YR+YNP K + +SR+V FDE D+
Sbjct: 484 NRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 571 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28098.7672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig28098.7672.1 >prot_H-paniculata_contig28098.7672.1 ID=prot_H-paniculata_contig28098.7672.1|Name=mRNA_H-paniculata_contig28098.7672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp NRAPTRPYNGGTPYEKWHGETPKLDHLRVFGCTAYVMFQRKLDNKAWAGVback to top mRNA from alignment at H-paniculata_contig28098:510..800- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig28098.7672.1 ID=mRNA_H-paniculata_contig28098.7672.1|Name=mRNA_H-paniculata_contig28098.7672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig28098:510..800- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig28098:510..800- >mRNA_H-paniculata_contig28098.7672.1 ID=mRNA_H-paniculata_contig28098.7672.1|Name=mRNA_H-paniculata_contig28098.7672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig28098:510..800- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |