mRNA_H-paniculata_contig28020.7662.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28020.7662.1
Unique NamemRNA_H-paniculata_contig28020.7662.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28020.7662.1 vs. uniprot
Match: D7G4Y6_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y6_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.560e-55
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 1
Query:   52 KYYDNTVFHRVIRKFMVQGGDPTGTGKGGESIYGKPFRDEIHTRVKFNHRGQVAMANENSPGTNHSQFFFTLDNAPHLDKKHTIFGKV 315
            +YYDNTVFHR+IRKFMVQGGDPTGTGKGGES+YGKPFRDEIHTR+KFNHRGQVAMANEN P TNHSQFFFTLD+A HLDKKHTIFGKV
Sbjct:   10 QYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKV 97          
BLAST of mRNA_H-paniculata_contig28020.7662.1 vs. uniprot
Match: A0A6H5K904_9PHAE (PPIase cyclophilin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K904_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 9.910e-50
Identity = 78/87 (89.66%), Postives = 84/87 (96.55%), Query Frame = 1
Query:   55 YYDNTVFHRVIRKFMVQGGDPTGTGKGGESIYGKPFRDEIHTRVKFNHRGQVAMANENSPGTNHSQFFFTLDNAPHLDKKHTIFGKV 315
            YYDNT+FHR+IRKFMVQGGDPTGTGKGGES+YGKPFRDEIHTR+KFNHRGQVAMANEN P TNHSQFFFTLD+A HLDKKHTIFGK+
Sbjct:   80 YYDNTIFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKI 166          
BLAST of mRNA_H-paniculata_contig28020.7662.1 vs. uniprot
Match: A0A835YS24_9STRA (Cyclophilin-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS24_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.200e-43
Identity = 74/101 (73.27%), Postives = 84/101 (83.17%), Query Frame = 1
Query:   13 PRARAISLSSTLPKYYDNTVFHRVIRKFMVQGGDPTGTGKGGESIYGKPFRDEIHTRVKFNHRGQVAMANENSPGTNHSQFFFTLDNAPHLDKKHTIFGKV 315
            PRA    L   +  YYDNTVFHR+I KFMVQGGDPTGTGKGG+SI+GKPF+DE H+R+KFNHRGQVAMANEN+P TN SQFFFTLD A  L+ KHTIFGK+
Sbjct:   34 PRACRNFLQLAMEGYYDNTVFHRIISKFMVQGGDPTGTGKGGDSIWGKPFKDECHSRIKFNHRGQVAMANENTPNTNRSQFFFTLDKADWLNGKHTIFGKI 134          
BLAST of mRNA_H-paniculata_contig28020.7662.1 vs. uniprot
Match: A0A2P4XDN1_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XDN1_9STRA)

HSP 1 Score: 144 bits (363), Expect = 6.340e-41
Identity = 69/101 (68.32%), Postives = 77/101 (76.24%), Query Frame = 1
Query:   13 PRARAISLSSTLPKYYDNTVFHRVIRKFMVQGGDPTGTGKGGESIYGKPFRDEIHTRVKFNHRGQVAMANENSPGTNHSQFFFTLDNAPHLDKKHTIFGKV 315
            P+A    +   L  YYD T+FHR+I  FMVQGGDPTG+G GGESIYG  F DE H+R+KFNHRG +AMANEN P TNHSQFFFTLD    LDKKHTIFGKV
Sbjct:   34 PKACRNFVQLCLEGYYDKTIFHRIISGFMVQGGDPTGSGNGGESIYGGAFVDEFHSRLKFNHRGLLAMANENKPNTNHSQFFFTLDACDFLDKKHTIFGKV 134          
BLAST of mRNA_H-paniculata_contig28020.7662.1 vs. uniprot
Match: A0A7S3HSD9_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSD9_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.690e-40
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 1
Query:   43 TLPKYYDNTVFHRVIRKFMVQGGDPTGTGKGGESIYGKPFRDEIHTRVKFNHRGQVAMANENSPGTNHSQFFFTLDNAPHLDKKHTIFGKV 315
            +L  YYD+T+ HR+++ FMVQ GDPTGTG GG+SI+G+PF+DE H R+KFNHRGQVAMANEN+P TN SQFF TLD    LD+KHTIFGKV
Sbjct:   31 SLEGYYDSTIVHRIVKGFMVQMGDPTGTGTGGKSIWGRPFKDEAHGRIKFNHRGQVAMANENAPNTNQSQFFITLDACEWLDRKHTIFGKV 121          
BLAST of mRNA_H-paniculata_contig28020.7662.1 vs. uniprot
Match: H3G7X8_PHYRM (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7X8_PHYRM)

HSP 1 Score: 140 bits (352), Expect = 1.690e-40
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   13 PRARAISLSSTLPKYYDNTVFHRVIRKFMVQGGDPTGTGKGGESIYGKPFRDEIHTRVKFNHRGQVAMANENSPGTNHSQFFFTLDNAPHLDKKHTIFGKV 315
            P+A    +   L  YYD T+FHR+I  FMVQGGDPTGTG GGES+Y   F DE H+R++FNHRG +AMANEN P +NHSQFFFTLD    LDKKHTIFGKV
Sbjct:   20 PKACRNFVQLCLEGYYDQTIFHRIIASFMVQGGDPTGTGDGGESVYEGAFIDEFHSRLRFNHRGLLAMANENKPNSNHSQFFFTLDACDFLDKKHTIFGKV 120          
BLAST of mRNA_H-paniculata_contig28020.7662.1 vs. uniprot
Match: F0YDY1_AURAN (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDY1_AURAN)

HSP 1 Score: 141 bits (355), Expect = 4.410e-40
Identity = 67/101 (66.34%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   13 PRARAISLSSTLPKYYDNTVFHRVIRKFMVQGGDPTGTGKGGESIYGKPFRDEIHTRVKFNHRGQVAMANENSPGTNHSQFFFTLDNAPHLDKKHTIFGKV 315
            PRA    +   L  YYD T FHRVI  FM QGGDPTGTG+GG+S++GKPFRDE H R++FNHRGQ+AMANEN P TN +QFFFTLD    LD KHTIFG V
Sbjct:   34 PRACRNFVQLALEGYYDRTCFHRVIPGFMAQGGDPTGTGEGGDSVWGKPFRDETHARIRFNHRGQLAMANENRPDTNRAQFFFTLDACSWLDGKHTIFGTV 134          
BLAST of mRNA_H-paniculata_contig28020.7662.1 vs. uniprot
Match: D0NHA6_PHYIT (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phytophthora TaxID=4783 RepID=D0NHA6_PHYIT)

HSP 1 Score: 139 bits (351), Expect = 4.500e-40
Identity = 67/101 (66.34%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   13 PRARAISLSSTLPKYYDNTVFHRVIRKFMVQGGDPTGTGKGGESIYGKPFRDEIHTRVKFNHRGQVAMANENSPGTNHSQFFFTLDNAPHLDKKHTIFGKV 315
            P+A    +   L  YYD T+FHR+I  FMVQGGDPTGTG GGESIY   F DE H+R+KFNHRG +AMANEN P +NHSQFFFTLD    L+KKHTIFGKV
Sbjct:   34 PKACRNFVQLCLEGYYDQTIFHRIIAGFMVQGGDPTGTGTGGESIYSGAFIDEFHSRLKFNHRGLLAMANENKPNSNHSQFFFTLDACDFLNKKHTIFGKV 134          
BLAST of mRNA_H-paniculata_contig28020.7662.1 vs. uniprot
Match: A0A067CHT7_SAPPC (PPIase cyclophilin-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CHT7_SAPPC)

HSP 1 Score: 147 bits (371), Expect = 5.290e-40
Identity = 66/101 (65.35%), Postives = 79/101 (78.22%), Query Frame = 1
Query:   13 PRARAISLSSTLPKYYDNTVFHRVIRKFMVQGGDPTGTGKGGESIYGKPFRDEIHTRVKFNHRGQVAMANENSPGTNHSQFFFTLDNAPHLDKKHTIFGKV 315
            P+A    +   +  YYDNT+FHR+I  FM+QGGDPTG+G GGESIYG+PF DE H+R++FNHRG +AMAN N P TN SQFFFTLDN   LD+KHTIFGKV
Sbjct:   34 PKAVRNFIQLAMEHYYDNTIFHRIIANFMIQGGDPTGSGDGGESIYGEPFTDEFHSRLRFNHRGLLAMANSNKPNTNKSQFFFTLDNCDFLDRKHTIFGKV 134          
BLAST of mRNA_H-paniculata_contig28020.7662.1 vs. uniprot
Match: A0A329S713_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S713_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.410e-39
Identity = 70/101 (69.31%), Postives = 78/101 (77.23%), Query Frame = 1
Query:   13 PRARAISLSSTLPKYYDNTVFHRVIRKFMVQGGDPTGTGKGGESIYGKPFRDEIHTRVKFNHRGQVAMANENSPGTNHSQFFFTLDNAPHLDKKHTIFGKV 315
            P+A    +   L  YYD T+FHR+I  FMVQGGDPTGTG+GGESIYG  F DE H+R+KFNHRG +AMANEN P TNHSQFFFTLD    LDKKHTIFGKV
Sbjct:   34 PKACRNFVQLCLEGYYDQTIFHRIIASFMVQGGDPTGTGQGGESIYGGAFIDEFHSRLKFNHRGLLAMANENKPNTNHSQFFFTLDACDFLDKKHTIFGKV 134          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28020.7662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4Y6_ECTSI1.560e-5590.91Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A6H5K904_9PHAE9.910e-5089.66PPIase cyclophilin-type domain-containing protein ... [more]
A0A835YS24_9STRA1.200e-4373.27Cyclophilin-type peptidyl-prolyl cis-trans isomera... [more]
A0A2P4XDN1_9STRA6.340e-4168.32Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A7S3HSD9_9STRA1.690e-4069.23Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
H3G7X8_PHYRM1.690e-4065.35Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytop... [more]
F0YDY1_AURAN4.410e-4066.34Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
D0NHA6_PHYIT4.500e-4066.34Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phytop... [more]
A0A067CHT7_SAPPC5.290e-4065.35PPIase cyclophilin-type domain-containing protein ... [more]
A0A329S713_9STRA1.410e-3969.31Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28020contigH-paniculata_contig28020:2356..2670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.3
Seed ortholog evalue1.8e-42
Seed eggNOG ortholog2880.D7G4Y6
Preferred namecwc27
KEGG koko:K12737
Hectar predicted targeting categoryother localisation
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0885@2759
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-00_007940.1
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041,ko03110
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929850.597462-CDS-H-paniculata_contig28020:2355..26701622929850.597462-CDS-H-paniculata_contig28020:2355..2670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28020 2356..2670 +
1691481039.1178658-CDS-H-paniculata_contig28020:2355..26701691481039.1178658-CDS-H-paniculata_contig28020:2355..2670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28020 2356..2670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28020.7662.1prot_H-paniculata_contig28020.7662.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28020 2356..2670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28020.7662.1

>prot_H-paniculata_contig28020.7662.1 ID=prot_H-paniculata_contig28020.7662.1|Name=mRNA_H-paniculata_contig28020.7662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
PAPPPRARAISLSSTLPKYYDNTVFHRVIRKFMVQGGDPTGTGKGGESIY
GKPFRDEIHTRVKFNHRGQVAMANENSPGTNHSQFFFTLDNAPHLDKKHT
IFGKV
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mRNA from alignment at H-paniculata_contig28020:2356..2670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28020.7662.1 ID=mRNA_H-paniculata_contig28020.7662.1|Name=mRNA_H-paniculata_contig28020.7662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig28020:2356..2670+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGCCCCCCCCCCTCGTGCGCGGGCCATCTCGCTATCATCAACTCTACC GAAGTACTACGATAACACCGTGTTCCATCGCGTGATCCGGAAGTTCATGG TTCAAGGCGGGGACCCCACCGGGACGGGGAAAGGAGGGGAGAGCATCTAC GGCAAGCCCTTCCGGGATGAAATACACACTCGGGTCAAATTCAATCATAG GGGACAGGTGGCGATGGCGAACGAAAACTCCCCGGGCACCAACCACAGCC AATTTTTCTTCACTCTCGACAACGCCCCGCATCTGGATAAGAAACACACA ATCTTCGGCAAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig28020:2356..2670+

>mRNA_H-paniculata_contig28020.7662.1 ID=mRNA_H-paniculata_contig28020.7662.1|Name=mRNA_H-paniculata_contig28020.7662.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig28020:2356..2670+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGCCCCCCCCCCTCGTGCGCGGGCCATCTCGCTATCATCAACTCTACC
GAAGTACTACGATAACACCGTGTTCCATCGCGTGATCCGGAAGTTCATGG
TTCAAGGCGGGGACCCCACCGGGACGGGGAAAGGAGGGGAGAGCATCTAC
GGCAAGCCCTTCCGGGATGAAATACACACTCGGGTCAAATTCAATCATAG
GGGACAGGTGGCGATGGCGAACGAAAACTCCCCGGGCACCAACCACAGCC
AATTTTTCTTCACTCTCGACAACGCCCCGCATCTGGATAAGAAACACACA
ATCTTCGGCAAGGTGCCCGCCCCCCCCCCTCGTGCGCGGGCCATCTCGCT
ATCATCAACTCTACCGAAGTACTACGATAACACCGTGTTCCATCGCGTGA
TCCGGAAGTTCATGGTTCAAGGCGGGGACCCCACCGGGACGGGGAAAGGA
GGGGAGAGCATCTACGGCAAGCCCTTCCGGGATGAAATACACACTCGGGT
CAAATTCAATCATAGGGGACAGGTGGCGATGGCGAACGAAAACTCCCCGG
GCACCAACCACAGCCAATTTTTCTTCACTCTCGACAACGCCCCGCATCTG
GATAAGAAACACACAATCTTCGGCAAGGTG
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