mRNA_H-paniculata_contig11202.766.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig11202.766.1 vs. uniprot
Match: A0A6H5K899_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K899_9PHAE) HSP 1 Score: 198 bits (504), Expect = 1.320e-51 Identity = 111/298 (37.25%), Postives = 154/298 (51.68%), Query Frame = 3
Query: 150 YTLHVKTCNTTFAGTANKVQLSFCSEKSS-CEDEPKNNYNEYGQLSKSGIWNSLHVPLDYEPDTMTVYMDSTDSWCMEQIVWQNGQNLLGKGAHIYLDGDLGIPGCQFGVHVNYTLGTMYPCQTTWQIFNLQGSDDFKYDLGVKAC-PGTRSG---------------------RALATICSESTCNDALGEVVERNLTM-----------------GRGEGRWTHWKIAIGFNPAAM-LWTATEGEWCATEAVFNGFQLIGKNDPPVRLG-GIQSYRLFHNLQYHGPAPGDRGENSG 917
+TL V+TCN T AG+ ++V LSFC C P+N YN +L++ G W +PL +EP M++ M D+WC ++++W G NLLG G +YLDGDLG GC +GVH + G YPCQ++W+ FNLQGSDD++Y++ VK C T SG R LA++CSES C++ +GEVV L G G G W + FNP AM L + WCA E FN + L+ + P + G+ RLF N+Q G G ++ G
Sbjct: 134 FTLEVRTCNETNAGSLDEVHLSFCDGGGDDCVMGPENVYNSVAELAEIGTWTPFEIPLAFEPTAMSMSMVGIDAWCFDEVIWNGGTNLLGSGGRVYLDGDLGKKGCNYGVH--FDTGWFYPCQSSWRFFNLQGSDDYEYEIKVKPCGSATSSGXXXXXXXXXXXXXXXXXXXSSRILASLCSESECDETVGEVVNVTLAAEPSHRHGXXXXXXTSRAGSG-GDWATTRTPATFNPVAMRLTNVGDFPWCAEEVAFNEYTLVNRFASPHGMKLGVGDDRLFFNVQSLGLLAGASSDDPG 428
BLAST of mRNA_H-paniculata_contig11202.766.1 vs. uniprot
Match: D7G1J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J9_ECTSI) HSP 1 Score: 191 bits (486), Expect = 2.720e-48 Identity = 117/335 (34.93%), Postives = 168/335 (50.15%), Query Frame = 3
Query: 72 VTTSLVVLAVFYLISAAGYT---NGYMTGYTLHVKTCNTTFAGTANKVQLSFCSEKSS-CEDEPKNNYNEYGQLSKSGIWNSLHVPLDYEPDTMTVYMDSTDSWCMEQIVWQNGQNLLGKGAHIYLDGDLGIPGCQFGVHVNYTLGTMYPCQTTWQIFNLQGSDDFKYDLGVKACPG-TRSGRA---------------------LATICSESTCNDALGEVVERNLTMGRGEGR--------------WTHWKIAIGFNPAAM-LWTATEGEWCATEAVFNGFQLIGKNDPPVRLG-GIQSYRLFHNLQYHGPAPGDRGENSGIIESIVYVAGE 950
V+ ++ ++F L+ AG+T + YTL V+T N T AG+ ++V LSFC C P+N YN +L++ G + +PL YEP M++ + D+WC ++ +W G NLLG GA +YLDGDLG GC +GVH + G YPCQ+ W+ FNL GSDD++Y++ VK C T SG A LA++CSES C++ GEVV L +G W + FNP AM L + WCA E FN + L+ + P + + RLF N+Q G GD ++ G + Y+ GE
Sbjct: 21 VSATVKAGSLFLLLLLAGWTFPATAAIQPYTLEVRTRNATNAGSLDEVHLSFCDGGGDDCVMGPENVYNSMAELAEIGTRATFEIPLAYEPTAMSISIVGIDAWCFDEAIWNGGTNLLGSGARVYLDGDLGEKGCNYGVH--FDTGWFYPCQSRWRFFNLPGSDDYEYEIKVKPCDSATPSGSASLSQQEEEAAAVRESSASTKILASLCSESECDETAGEVVNVTLAAEPAQGXXXXXXXXXXXXXXDWATTRTPATFNPVAMRLTNVGDLPWCAEEVAFNEYTLVNRYASPHGMKLDVGDDRLFFNVQSLGLLAGDSSDDPGGSDDD-YIKGE 352
BLAST of mRNA_H-paniculata_contig11202.766.1 vs. uniprot
Match: A0A6H5JRD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD2_9PHAE) HSP 1 Score: 144 bits (364), Expect = 7.400e-34 Identity = 103/321 (32.09%), Postives = 147/321 (45.79%), Query Frame = 3
Query: 147 GYTLHVKTCNTTFAGTANK-VQLSFCSEKSSC-----EDEPKNNYNEYGQLSKSGIWNSLHVPLDYEPDTMT------VYMDSTDSWCMEQIVWQNGQNLLGKGAHIYLDGDLGIPGCQFGVHVNYTLGTMYP-----CQTTWQIFNLQGSDDFKYDLGVKACPGTRSGRALATICSESTCN-DALGEVVERNLTMGRGEGRWTHWKIAIGFNPAAMLWTATEGE--WCATEAVFNGFQLIGKNDPPVRLGGIQSYRLFHNLQYHGPAPGDRGENSGIIESI---------VYVAGEVVIAVLSAFILAFMGGFAKHLYRR 1022
GY+L V CN+T++GT + ++ FC S C ED+ +S I + + YEP T+ V DSWC++++ W++G NLLG+ + +L+ GC G+ T G + P C W+ FN+ G ++KYD+ VKAC GT LA CS S C+ A+GE L M EG WT + FNP A+ A +G+ WCA E FNG+ LI N V G Q +F N+Q +G P S + A EV + V+ A ++A G YRR
Sbjct: 19 GYSLKVTACNSTYSGTPDDDIKFHFCDGGSYCILGDAEDDDWVGLQGNSISDRSTI--EIAIAPGYEPTTIEFRKGFGVEDPGQDSWCIDRVTWEDGDNLLGEDGYFFLEHQNEAMGCINGIAD--TTGWVDPTEKVACMKKWRFFNINGQSEYKYDVRVKACAGTSLSIVLAYFCSNSNCDRGAIGEEWPERLEMNDVEGGWTDVSFYLPFNPLAVRLEAADGDDAWCADELFFNGYSLI-TNMTKVETEGFQ---IFPNIQENGQTPAPTXXXVDASASTKEESDDPKWLDAAWEVTVTVIGAVVVAAGAGCFARAYRR 331 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11202.766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11202.766.1 >prot_H-paniculata_contig11202.766.1 ID=prot_H-paniculata_contig11202.766.1|Name=mRNA_H-paniculata_contig11202.766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=390bp MSSRKESMVTTSLVVLAVFYLISAAGYTNGYMTGYTLHVKTCNTTFAGTAback to top mRNA from alignment at H-paniculata_contig11202:554..7587+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11202.766.1 ID=mRNA_H-paniculata_contig11202.766.1|Name=mRNA_H-paniculata_contig11202.766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7034bp|location=Sequence derived from alignment at H-paniculata_contig11202:554..7587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11202:554..7587+ >mRNA_H-paniculata_contig11202.766.1 ID=mRNA_H-paniculata_contig11202.766.1|Name=mRNA_H-paniculata_contig11202.766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2340bp|location=Sequence derived from alignment at H-paniculata_contig11202:554..7587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |