mRNA_H-paniculata_contig27896.7619.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27896.7619.1
Unique NamemRNA_H-paniculata_contig27896.7619.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27896.7619.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 5.720e-96
Identity = 143/250 (57.20%), Postives = 180/250 (72.00%), Query Frame = 1
Query:    4 PYRQVLAVLQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKNVSAELFDEHIFLPTGQDLEKVMHEYDRLGFTGAIGSTDVTHIKWDCCLCSFARSYTGKEGFTTIAYQAKVDHSGRILTVTKGFPGATNDKSIIRYDLAVQMVREDSVYSDRTFRLYNKDGTSTEHKGVYLL-------WAMLMPSSKHAICGEETRWSKTLESVRKDVECFFGVLKGRFRMLRLPILYREKEATDNVFFACCILHSML 732
            P+ QVLA LQ+L RGN F DI  MS +   TV   FH+FCK  +AEL+DE+++LPTG+DL KVM +YDR+GF GA+GSTDVTHI W  C  + AR YTGKEG  T+A+Q  VDHSGR+L VT+GF GATNDK+IIRYD AV  +R D VY+++ ++LY +DG   E KG YLL       W  L+P SK  I   +  +SK LES RKDVEC+FG+LKGRFR+ +L I + ++E  DNVFF CCILH+ML
Sbjct:   80 PHTQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNML 329          
BLAST of mRNA_H-paniculata_contig27896.7619.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 4.340e-94
Identity = 142/247 (57.49%), Postives = 176/247 (71.26%), Query Frame = 1
Query:   13 QVLAVLQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKNVSAELFDEHIFLPTGQDLEKVMHEYDRLGFTGAIGSTDVTHIKWDCCLCSFARSYTGKEGFTTIAYQAKVDHSGRILTVTKGFPGATNDKSIIRYDLAVQMVREDSVYSDRTFRLYNKDGTSTEHKGVYLL-------WAMLMPSSKHAICGEETRWSKTLESVRKDVECFFGVLKGRFRMLRLPILYREKEATDNVFFACCILHSML 732
            +VLA LQ+L RGNCF DI  MS +   T    FH+F +  + E++ EHIFLPTG   +KVM +YDRLGF+GA GSTDVTHI W  C  + ARSYTGKEG+ T+AYQ  VDH+ R+L VT GF G+TNDKSIIRYD AV  +RED +YS++ F +Y  DGT  + KG YLL       W  L+P SK+ I   +  +SK LESVRKDVECFFG++KGRFR+L+L I Y ++E  DNVFF CCILH+ML
Sbjct:  158 KVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNML 404          
BLAST of mRNA_H-paniculata_contig27896.7619.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 5.300e-93
Identity = 141/247 (57.09%), Postives = 178/247 (72.06%), Query Frame = 1
Query:   13 QVLAVLQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKNVSAELFDEHIFLPTGQDLEKVMHEYDRLGFTGAIGSTDVTHIKWDCCLCSFARSYTGKEGFTTIAYQAKVDHSGRILTVTKGFPGATNDKSIIRYDLAVQMVREDSVYSDRTFRLYNKDGTSTEHKGVYLL-------WAMLMPSSKHAICGEETRWSKTLESVRKDVECFFGVLKGRFRMLRLPILYREKEATDNVFFACCILHSML 732
            +VLA LQ+L RGN F DI  MS +   TV   FH+FCK  +AEL+DE+++LPTG+DL KVM +YDR+GF GA+GSTDVTHI W  C  + AR YTGKEG  T+A+Q  VDHSGR+L VT+GF GATNDK+IIRYD AV  +R D VY+++ ++LY +DG   E KG YLL       W  L+P SK  I   +  +SK LES RKDVEC+FG+LKGRFR+ +L I + ++E  DNVFF CCILH+ML
Sbjct:  174 KVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNML 420          
BLAST of mRNA_H-paniculata_contig27896.7619.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 278 bits (712), Expect = 1.560e-89
Identity = 133/249 (53.41%), Postives = 179/249 (71.89%), Query Frame = 1
Query:   13 QVLAVLQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKNVSAELFDEHIFLPTGQ--DLEKVMHEYDRLGFTGAIGSTDVTHIKWDCCLCSFARSYTGKEGFTTIAYQAKVDHSGRILTVTKGFPGATNDKSIIRYDLAVQMVREDSVYSDRTFRLYNKDGTSTEHKGVYLL-------WAMLMPSSKHAICGEETRWSKTLESVRKDVECFFGVLKGRFRMLRLPILYREKEATDNVFFACCILHSML 732
            +VLA L +LGRGNCF  I Q+S M   TVQ  FHKFCK+ + E++DEHI+LP+ Q  +L+ VM +YDRLGF+GA+GS DVTHI W  C  + ARSYTGKEG  T+ YQ  V+H+GR + VT+GF  +TNDK+ + +D  V+ +R D+ Y+++TF +YN+DGT+T  KG YLL       W +LM  +K+ +   +  +SK LESVRKDVECFFG+LKG FR+ ++ + Y E+E  DNVFF CCILH+ML
Sbjct:   98 KVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNML 346          
BLAST of mRNA_H-paniculata_contig27896.7619.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 272 bits (695), Expect = 2.350e-86
Identity = 141/277 (50.90%), Postives = 181/277 (65.34%), Query Frame = 1
Query:   13 QVLAVLQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKNVSAELFDEHIFLPTGQD--LEKVMHEYDRLGFTGAIGSTDVTHIKWDCCLCSFARSYTGKEGFTTIAYQAKVDHSGRILTVTKGFPGATNDKSIIRYDLAVQMVREDSVYS----------------------------DRTFRLYNKDGTSTEHKGVYLL-------WAMLMPSSKHAICGEETRWSKTLESVRKDVECFFGVLKGRFRMLRLPILYREKEATDNVFFACCILHSML 732
            +VLA L +LGRGNCF  I QMS M   TVQG FHKFC++ + E++DE I LPT +   L+ VM +YDRLGFTGA+GS DVTHI W  C  + ARSYTGKEGF TIAYQ  VDH+GR + VT+GF G+TNDK+I+ +D AV+ +  D  Y+                            ++TF +YN+DGT+T  KG YLL       W +L+  SK+ +   +  +SK LESVRKDVECFFG+LKGRFR+L+L + Y+ +E  DNVFF C ILH+ML
Sbjct:   85 KVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNML 361          
BLAST of mRNA_H-paniculata_contig27896.7619.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 1.400e-85
Identity = 127/235 (54.04%), Postives = 169/235 (71.91%), Query Frame = 1
Query:   28 LQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKNVSAELFDEHIFLPTGQDLEKVMHEYDRLGFTGAIGSTDVTHIKWDCCLCSFARSYTGKEGFTTIAYQAKVDHSGRILTVTKGFPGATNDKSIIRYDLAVQMVREDSVYSDRTFRLYNKDGTSTEHKGVYLLWAMLMPSSKHAICGEETRWSKTLESVRKDVECFFGVLKGRFRMLRLPILYREKEATDNVFFACCILHSML 732
            L+VLG+GNCFDD+ Q+S M ES  Q  FHKFC++ +AE+FDEHI+LPTG  L++VM  + +LG TGA GSTDVTHI  + C  +  RS+TGKEGF TIAY+  VDH+GR L VT GF G TNDK+ IRYD  V  +R +S Y++R ++L   +GT    +G +L+       + +    E+T +S+ LESVRKDVECFFG+LKGRFR+L+L + Y ++E  DN+FF CCILH+ML
Sbjct:  137 LKVLGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLI-----VDNGYYESNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNML 366          
BLAST of mRNA_H-paniculata_contig27896.7619.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 1.940e-83
Identity = 129/249 (51.81%), Postives = 176/249 (70.68%), Query Frame = 1
Query:   13 QVLAVLQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKNVSAELFDEHIFLPTGQ--DLEKVMHEYDRLGFTGAIGSTDVTHIKWDCCLCSFARSYTGKEGFTTIAYQAKVDHSGRILTVTKGFPGATNDKSIIRYDLAVQMVREDSVYSDRTFRLYNKDGTSTEHKGVYLL-------WAMLMPSSKHAICGEETRWSKTLESVRKDVECFFGVLKGRFRMLRLPILYREKEATDNVFFACCILHSML 732
            +VLA L +LGRGN F  I  +S M   TVQ  FH+FC++ + E++DEHIFLP+ +  +L++VM +Y++LGF GA+GSTDVTHI W  C  +  RSYTGKEG  T+ YQ  V+H+GR+L VT+GF G+TNDK+II  D AV  +R D  Y+++ F ++ KDGT+   KG YL+       W ML+  SK+ +   +  +SK LESVRKDVECFFG+LK RFR+L+L + Y+++E  D VFF CCILH+ML
Sbjct:  127 KVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNML 375          
BLAST of mRNA_H-paniculata_contig27896.7619.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 6.510e-81
Identity = 126/243 (51.85%), Postives = 165/243 (67.90%), Query Frame = 1
Query:   25 VLQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKNVSAELFDEHIFLPTGQDLEKVMHEYDRLGFTGAIGSTDVTHIKWDCCLCSFARSYTGKEGFTTIAYQAKVDHSGRILTVTKGFPGATNDKSIIRYDLAVQMVREDSVYSDRTFRLYNKDGTSTEHKGVYLL-------WAMLMPSSKHAICGEETRWSKTLESVRKDVECFFGVLKGRFRMLRLPILYREKEATDNVFFACCILHSML 732
            V QVLG+GNCFDD+ Q+S M +S  Q  FHKFC++ +AE+FDEHI+LPTG  L++VM  + +LG+TGA GSTDVTHI W+ C  +  RS+TGKEGF TIAY   VDH GR L VT GF GATNDK+IIRYD  V  +R  S Y++R ++L   +GT    +G +L+       W  L+  SK+    E+T +S+ LESVRKDV CF        R+L+L + Y ++E  DN+FF CCILH+ML
Sbjct:   40 VPQVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYVDNIFFTCCILHNML 274          
BLAST of mRNA_H-paniculata_contig27896.7619.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 1.260e-79
Identity = 128/249 (51.41%), Postives = 165/249 (66.27%), Query Frame = 1
Query:   13 QVLAVLQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKNVSAELFDEHIFLPTGQD--LEKVMHEYDRLGFTGAIGSTDVTHIKWDCCLCSFARSYTGKEGFTTIAYQAKVDHSGRILTVTKGFPGATNDKSIIRYDLAVQMVREDSVYSDRTFRLYNKDGTSTEHKGVYLL-------WAMLMPSSKHAICGEETRWSKTLESVRKDVECFFGVLKGRFRMLRLPILYREKEATDNVFFACCILHSML 732
            QVLA L +LG+GNCF  I QMS M   TVQG FHKFC+  + E++DEHI LP  +   L  VM +YDRLG                 C  + ARSYTGK+ F TIAYQ  VDH+ R + VT+GF G+TNDK+I+ +D AV  +R D  Y+++TF LYN+DGT+T  KG Y L       W +L+  SK+ +  ++  +SK LESVRKDVECFFG+LKGRFR+L+L + Y+ +E  DNVFF CCILH+ML
Sbjct:   20 QVLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNML 251          
BLAST of mRNA_H-paniculata_contig27896.7619.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 8.930e-74
Identity = 112/206 (54.37%), Postives = 149/206 (72.33%), Query Frame = 1
Query:  142 LFDEHIFLPTGQD--LEKVMHEYDRLGFTGAIGSTDVTHIKWDCCLCSFARSYTGKEGFTTIAYQAKVDHSGRILTVTKGFPGATNDKSIIRYDLAVQMVREDSVYSDRTFRLYNKDGTSTEHKGVYLL-------WAMLMPSSKHAICGEETRWSKTLESVRKDVECFFGVLKGRFRMLRLPILYREKEATDNVFFACCILHSML 732
            ++DEHI LPT +   L+ V+ +YDRLGFTGA+GS DVTHI W  C  + ARSYTGKEGF TI YQ  VDH+GR + VT+GF G+TNDK+ + +D AV+ +R D  Y+++TF +YN+DGT+T  KG Y+L       W +L+  SK+ +   +  +SK LESVRKDVECFFG+LKGR R+L L + ++ +E  DNVFF CCILH+ML
Sbjct:    1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNML 206          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27896.7619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY50_9PHAE5.720e-9657.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE4.340e-9457.49Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE5.300e-9357.09Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE1.560e-8953.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE2.350e-8650.90DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KSI7_9PHAE1.400e-8554.04DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JBE2_9PHAE1.940e-8351.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE6.510e-8151.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE1.260e-7951.41DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FSK2_ECTSI8.930e-7454.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27896contigH-paniculata_contig27896:1722..2893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score235.3
Seed ortholog evalue2.9e-59
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size732
Cds size732
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.9884214-CDS-H-paniculata_contig27896:1721..22431622929842.9884214-CDS-H-paniculata_contig27896:1721..2243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27896 1722..2243 +
1691481035.5498064-CDS-H-paniculata_contig27896:1721..22431691481035.5498064-CDS-H-paniculata_contig27896:1721..2243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27896 1722..2243 +
1622929843.0020895-CDS-H-paniculata_contig27896:2683..28931622929843.0020895-CDS-H-paniculata_contig27896:2683..2893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27896 2684..2893 +
1691481035.5631735-CDS-H-paniculata_contig27896:2683..28931691481035.5631735-CDS-H-paniculata_contig27896:2683..2893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27896 2684..2893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27896.7619.1prot_H-paniculata_contig27896.7619.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27896 1722..2893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27896.7619.1

>prot_H-paniculata_contig27896.7619.1 ID=prot_H-paniculata_contig27896.7619.1|Name=mRNA_H-paniculata_contig27896.7619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=244bp
APYRQVLAVLQVLGRGNCFDDISQMSLMGESTVQGAFHKFCKNVSAELFD
EHIFLPTGQDLEKVMHEYDRLGFTGAIGSTDVTHIKWDCCLCSFARSYTG
KEGFTTIAYQAKVDHSGRILTVTKGFPGATNDKSIIRYDLAVQMVREDSV
YSDRTFRLYNKDGTSTEHKGVYLLWAMLMPSSKHAICGEETRWSKTLESV
RKDVECFFGVLKGRFRMLRLPILYREKEATDNVFFACCILHSML
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mRNA from alignment at H-paniculata_contig27896:1722..2893+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27896.7619.1 ID=mRNA_H-paniculata_contig27896.7619.1|Name=mRNA_H-paniculata_contig27896.7619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1172bp|location=Sequence derived from alignment at H-paniculata_contig27896:1722..2893+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCCATATCGCCAGGTTCTCGCTGTTCTTCAGGTACTGGGCAGGGGAAA CTGCTTTGATGACATTTCTCAGATGTCCCTCATGGGCGAGTCGACAGTGC AAGGAGCATTCCATAAGTTCTGCAAGAACGTTTCGGCAGAGCTGTTCGAT GAGCATATATTCCTGCCGACGGGGCAGGATCTCGAGAAGGTCATGCATGA GTATGACCGCTTGGGGTTCACCGGGGCCATCGGCTCTACCGATGTTACCC ACATCAAATGGGACTGCTGCCTGTGCTCCTTTGCACGTTCTTACACGGGC AAGGAGGGATTCACGACCATTGCATACCAAGCGAAGGTCGATCATAGCGG CCGTATCCTTACCGTCACGAAAGGTTTTCCTGGAGCTACCAACGACAAGT CTATCATCCGTTACGACCTAGCGGTGCAGATGGTTCGTGAGGATTCTGTG TATAGTGACCGGACGTTCAGGCTCTATAACAAGGACGGCACATCGACCGA GCACAAGGGTGTCTACCTGCTGGTGGACAATGGGTGACATGAAGTGAGTG TGATACAAGTAACGTCACATGTTGACCCGAAATGTATGTGGGGACTGTAT CACACGATCGGCGTGACCGCGTCAGGAGCACAATGTTTCCACATTGCCGT CAATAAAGGCCGAGATTTAATGTAGCTGAAACGCGTACATACAGAAGACG TGAGAAACACGGTACGTATCACTGTCATCAGTAGGTCGCGAATAATGTTT TCGGCGCCGTTTCAATACACATACCCGTAGAAAAGGAGGAAGTCCAACAT AACATTACATAAAACGTTTCCTATAAACATGGTAGCATCGCCGTTTACCC GTCGAAGGGGTCCATGGCGGCCGCCGCGTGAGAAGCCAACATACATCATT GCCCGCTCCGTGCAGACCCAACCCTATCTCAACCACTCCACGGCGTTTTC ATATGCAAACAGTGGGCTATGCTCATGCCCTCGTCGAAGCATGCTATATG TGGCGAGGAGACGCGATGGAGCAAGACGTTGGAGAGCGTACGAAAGGATG TGGAGTGCTTCTTCGGCGTTCTGAAGGGTCGCTTTAGAATGCTCAGACTC CCCATCCTCTACCGCGAAAAAGAGGCCACCGACAACGTCTTCTTCGCATG CTGCATCCTCCACAGCATGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig27896:1722..2893+

>mRNA_H-paniculata_contig27896.7619.1 ID=mRNA_H-paniculata_contig27896.7619.1|Name=mRNA_H-paniculata_contig27896.7619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1464bp|location=Sequence derived from alignment at H-paniculata_contig27896:1722..2893+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCCATATCGCCAGGTTCTCGCTGTTCTTCAGGTACTGGGCAGGGGAAA
CTGCTTTGATGACATTTCTCAGATGTCCCTCATGGGCGAGTCGACAGTGC
AAGGAGCATTCCATAAGTTCTGCAAGAACGTTTCGGCAGAGCTGTTCGAT
GAGCATATATTCCTGCCGACGGGGCAGGATCTCGAGAAGGTCATGCATGA
GTATGACCGCTTGGGGTTCACCGGGGCCATCGGCTCTACCGATGTTACCC
ACATCAAATGGGACTGCTGCCTGTGCTCCTTTGCACGTTCTTACACGGGC
AAGGAGGGATTCACGACCATTGCATACCAAGCGAAGGTCGATCATAGCGG
CCGTATCCTTACCGTCACGAAAGGTTTTCCTGGAGCTACCAACGACAAGT
CTATCATCCGTTACGACCTAGCGGTGCAGATGGTTCGTGAGGATTCTGTG
TATAGTGACCGGACGTTCAGGCTCTATAACAAGGACGGCACATCGACCGA
GCACAAGGGTGTCTACCTGCTGGCGCCATATCGCCAGGTTCTCGCTGTTC
TTCAGGTACTGGGCAGGGGAAACTGCTTTGATGACATTTCTCAGATGTCC
CTCATGGGCGAGTCGACAGTGCAAGGAGCATTCCATAAGTTCTGCAAGAA
CGTTTCGGCAGAGCTGTTCGATGAGCATATATTCCTGCCGACGGGGCAGG
ATCTCGAGAAGGTCATGCATGAGTATGACCGCTTGGGGTTCACCGGGGCC
ATCGGCTCTACCGATGTTACCCACATCAAATGGGACTGCTGCCTGTGCTC
CTTTGCACGTTCTTACACGGGCAAGGAGGGATTCACGACCATTGCATACC
AAGCGAAGGTCGATCATAGCGGCCGTATCCTTACCGTCACGAAAGGTTTT
CCTGGAGCTACCAACGACAAGTCTATCATCCGTTACGACCTAGCGGTGCA
GATGGTTCGTGAGGATTCTGTGTATAGTGACCGGACGTTCAGGCTCTATA
ACAAGGACGGCACATCGACCGAGCACAAGGGTGTCTACCTGCTGTGGGCT
ATGCTCATGCCCTCGTCGAAGCATGCTATATGTGGCGAGGAGACGCGATG
GAGCAAGACGTTGGAGAGCGTACGAAAGGATGTGGAGTGCTTCTTCGGCG
TTCTGAAGGGTCGCTTTAGAATGCTCAGACTCCCCATCCTCTACCGCGAA
AAAGAGGCCACCGACAACGTCTTCTTCGCATGCTGCATCCTCCACAGCAT
GCTGTGGGCTATGCTCATGCCCTCGTCGAAGCATGCTATATGTGGCGAGG
AGACGCGATGGAGCAAGACGTTGGAGAGCGTACGAAAGGATGTGGAGTGC
TTCTTCGGCGTTCTGAAGGGTCGCTTTAGAATGCTCAGACTCCCCATCCT
CTACCGCGAAAAAGAGGCCACCGACAACGTCTTCTTCGCATGCTGCATCC
TCCACAGCATGCTG
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