mRNA_H-paniculata_contig27886.7617.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 261 bits (667), Expect = 8.180e-74 Identity = 178/444 (40.09%), Postives = 237/444 (53.38%), Query Frame = 1
Query: 10 LLDSGARVT-LSEDILHRLQQQWPGRELSRPYTGMVKAKVADGRELDLTEQTVPLHIILASSWGDSRVT-LPFMIVPGKLQVVILGGLMLRKQLGIDVMQQLKAMIEWRRGGNVIEDKAREQGNKK----------------------EQSLVRGRSVEVNVETLLRAAGA-----IEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALS-GDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTYRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPE 1251
+LD G+ +T +S I RLQ +P ++ K KVADGR L +T++T P+ I L +SWG V L F ++PG +VVILG L K LGIDV + L A R +E A +Q + E+ + RG ++++ E A A + A GL V +LR I+ + +AFRR L GDPPA+VEPL V + AR +AR R + K WL A G+VF N QA S AMA PKK YR+V+D+RA N + MPN E ++ A + +LDLLQ YWQ PL P+AQEIFT+ T +YTP R PQG+LNATSYFQ T+ +L GL C VWVDD+ W +L+ L ++L+RL+ G+Y AAHK F + WCGK+YS V HDPE
Sbjct: 539 ILDPGSGLTTMSAGIASRLQAAFPDVQVVGGMQNPGKLKVADGRVLAVTQKTCPVQIALHTSWGLVSVDPLSFAVMPGNDEVVILGNPTL-KALGIDVYESLGACARSRASVAGVETAAYKQCRRVTLAVDALQQREGPEQVEPDPAVERLVARGPDMDMSPEEEASARSASLDSAVSSAAAAGLEEPHVGRLRGII-SERWNAFRRGLRHGDPPANVEPLRVTLKPGARPVKARPRVYNPIKTAWL-------AGLGLVFLNMQAVWASAAMATPKKGGYRLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKVYSEGQVEHDPE 970
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 249 bits (637), Expect = 7.990e-70 Identity = 160/456 (35.09%), Postives = 238/456 (52.19%), Query Frame = 1
Query: 10 LLDSGARVT-LSEDILHRLQQQWPGRELSRPYTGMVKAKVADGRELDLTEQTVPLHIILASSWG----DSRVTLPFMIVPGKLQVVILGGLMLRKQLGIDVMQQLKAMIEWRRGGNVIEDKAREQGNKKEQSLVRGRSVEVNVETLLRAAG-----------------------------------AIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKD----TYRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHD 1245
+LDSGA +T +S + +LQ++ P + + K +GR + +TE+T P+ + + + WG D R F ++PG VVI+G L K LGIDV + AM + + ++++ E R + V+VE + A A++ A GL P G+ +LR++V + + FRR + GDPPA+V P+ V + A+ +ARLR+ + DK +WL L G+V+ N QA S M PK+ TYR V D+RAVN I S PMP+LE + ++ A+ + +LD+LQGYW MPL P+AQEIFTM+ +Y+P R PQGVLNATSY+Q TM +L L C VWVDDI W ++L+ L ++L R + G++ AAHK + ++WCGK+YS + HD
Sbjct: 431 ILDSGAGLTAMSASVAQKLQKKCPDVSVVVSTDHPHQVKTVEGRLVTVTEKTCPVRMTIHTQWGPVVLDPRA---FAVMPGTDDVVIIGDPTLTK-LGIDVYE---AMAQ-----HALKERDMEVRGVDTPGFHEARRISVSVEAFTQRAAPDPPDAAVERLVARGPDMVMTPAEEEAGRADALDRAVDSAADAGLSPWGLDRLRQVV-DRRFNVFRRGVRGDPPANVPPMTVKLKTGAKPVKARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKVYSKGVIEHD 870
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6A3L091_9STRA (RNA-directed DNA polymerase n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L091_9STRA) HSP 1 Score: 188 bits (477), Expect = 1.290e-48 Identity = 131/420 (31.19%), Postives = 218/420 (51.90%), Query Frame = 1
Query: 1 VDILLDSGA-RVTLSEDILHRLQQQWPGRELSRPYTGMVKAKVADGRELDLTEQ-TVPLHIILASSWGDSRVTLPFMIVPGKLQVVILGGLMLRKQLGIDVMQQLKAMIEWRRGGNVIEDKAREQGNKKEQSLVRGRSVEVNVETLLRAAGAIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDT-YRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPE 1251
V ++DSGA + + + ++ L PG + RP V A +ADG ++ T+ T+ L ++ A+ + R +++PG +LG LR LGIDV +Q++ + + +D A ++ + E ++ V LL +EAR G+ +A++R +++ + +R + DP A V+PL V + A+ RA+ R + ++ +L E +L + + N QAR S + V K +R+ DYR +N++ P MPNL + GA F DLL+G+WQ+PL P QE+F+ +T VYTPTR PQG ++ +FQ + +LA LL + C +W+DDI ++A E +R R E ++ G+ + K LF+ ++ WCGK+ SG + HDPE
Sbjct: 178 VPYIVDSGADKSMVPQRVVEELISVSPGLAM-RPLDAPVAATLADGTDVTCTQSVTLDLQLVTAAGIVNVRGAC-CLVLPG---TFLLGDETLRA-LGIDVTRQIEQLAT----PTIADDGADDEFAEPEYGPTEDDVIDEGVRHLL------DEARENGVGEEHLAEMR-VLLELYRDLWRVNVGPDPAARVDPLQVTLVEGAKPYRAKARKYAPLQSTFLRECTEELERHDFIRRNDQARWASPVVPVKKPGGGFRITTDYRVINSMTVPIAGTMPNLASAAGAVRGAVAFARFDLLKGFWQLPLHPNCQEMFSFLTEDAVYTPTRVPQGATDSALHFQAQLQRILAPLLHRNCLLWIDDILLFASSMDEFLRVFREFFELIKDHGLKLSVTKCVLFQPQVLWCGKMVSGTDIQHDPE 580
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE) HSP 1 Score: 182 bits (461), Expect = 4.110e-47 Identity = 147/416 (35.34%), Postives = 205/416 (49.28%), Query Frame = 1
Query: 94 RPYTGMVKAKVADGRE-LDLTEQTVPLHIILASSWGDSRVTLPFM--IVPGKLQVVILGGLMLRKQLGIDVMQQL---------------KAMIEWRRGGNVIEDKAREQGNKKEQS------LVRGR---SVEVNVETLLRAAG---AIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALS-GDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTYRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDP 1248
R +T + KVADGR L++ ++T P+ I L +SWG V PF ++ G +VVILG L K LGIDV + L A E RR ++ R +G ++ + LV R + E R+A A+ A GL V +LR I+ +AFR + GDPPA+VEPL V + A +AR R+ + K WL G+VF N QA S AMA PKK YR+++D+RA NN + MPN E + +LDLL+ Y Q PL P+AQ+IFT+ T + ++TP R PQG+LNATSYFQ T+ +L GL C VWVD + +L+ L +++ERL G+ A+ R G+ A +S P
Sbjct: 341 RGHTKPGELKVADGRRVLEVIQKTCPVRIALHTSWGLVSVD-PFSLAVMTGNDEVVILGNPTL-KALGIDVYESLGTCSRSRASVMGVQTTAWKECRRVTLAVDALQRSEGREQVEQDPAVKRLVAQRPHADMSPEEEASARSASLDSAVSSAVVAGLDEPHVGRLRSII-RERWNAFRPGMRPGDPPANVEPLRVTLKPGALPVKARPRTYNPIKTAWLAGCMASPVVLGLVFLNMQAVSASAAMATPKKGGYRLLSDFRAANNQVEKVPGVMPNPEASMAQFSATKFHGSLDLLRAYCQRPLSPEAQKIFTIATPRGLHTPKRVPQGILNATSYFQATLSRILEGLN---CLVWVDGVVNRGMEEDDLLNTLDMIVERLDGAGLTWPPTNARFLRPASHGAGRCTPRARLSMIP 750
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6A3GM82_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GM82_9STRA) HSP 1 Score: 176 bits (445), Expect = 8.530e-47 Identity = 103/268 (38.43%), Postives = 142/268 (52.99%), Query Frame = 1
Query: 460 ARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSH 1242
AR +GL GV +LR+I++ +FR DPP V PL V V +A+ +A+ R S D +LD H KL + G+VF N ++R S V KK+ RM D R VN PMP LE + + GA V LD +GYWQ+PL +QE+FT +T + +YTPTR P G +A +Y Q + ++ LLG W+DDI +A EL++ L VL R +V G+ A K + F E++WCGK S A V H
Sbjct: 44 ARAKGLSAKGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVTVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPMPVLEVVLGALEGAKVVFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILAWLDDILGYAESEDELLQLLDQVLARCEVYGLKLHAKKCEFFEIEVKWCGKTVSAAGVRH 310
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6G0NWQ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWQ3_9STRA) HSP 1 Score: 170 bits (430), Expect = 4.120e-46 Identity = 97/259 (37.45%), Postives = 137/259 (52.90%), Query Frame = 1
Query: 487 GVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSH 1242
GV +LR+I++ +FR DPP V PL V V +A+ +A+ R S D +LD H KL + G+VF N ++R S V KK+ RM D R VN P+P LE + + GA V +D +GYWQ+PL +QE+FT +T + +YTPTR P G +A +Y Q + ++ GLLG W+DDI +A EL+ L VL R + G+ A K + F E++WCGK+ S A V H
Sbjct: 18 GVKRLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTMLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVRH 275
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6A4AUS0_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4AUS0_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.490e-45 Identity = 98/267 (36.70%), Postives = 139/267 (52.06%), Query Frame = 1
Query: 472 GLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPE 1251
GL +G AKLR VM + FR DPP V P+ V + DAR RA+ R S + +LD H L G+V+ N ++R S V K++ RM D R+VN P PMP L+ + + GA VF LD +GYWQ+PL P +QE+++ VT + +YTPTR P G +A +Y Q + ++ L+G W+DDI +A L+ L VL R + G+ A K + F E++WCG++ S V H PE
Sbjct: 2 GLSLDGRAKLR-AVMRVRVDNFRLEFGNDPPVRVTPMQVRLKDDARPVRAQPRPYSPNDRAFLDRHTAALLAHGLVYKNHRSRWASAPRIVRKREQDVDPTADPRMTIDTRSVNERTEPMSWPMPVLDVVLGELEGARVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGATDAVAYCQGVVDEIFGDLIGDGILAWLDDILGYAENESALLELLDKVLSRCEAYGLKLHAKKCQFFATEVKWCGRVISADGVKHYPE 267
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A2P4WWJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWJ1_9STRA) HSP 1 Score: 178 bits (452), Expect = 2.010e-45 Identity = 103/271 (38.01%), Postives = 145/271 (53.51%), Query Frame = 1
Query: 460 ARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPE 1251
AR +GL GV +LR+I++ +FR DPP V PL V V +A+ +A+ R S + +LD H KL + G+V N ++R S V KK+ RM D R VN PMP LE + + GA VF LD +GYWQ+PL +QE+FT +T + +YTPTR P G +A +Y Q + ++ LLG VW+DDI +A +EL++ L VL R + G+ A K F E++WCGK+ S A V H P+
Sbjct: 403 ARAKGLSAKGVKRLREILLRRQ-DSFRLEFGSDPPVKVAPLQVRVKVNAQPTKAQPRRYSSNDKAFLDRHTAKLQEFGLVSLNHRSRWASAPRIVRKKEQGSDPTADPRMTIDTRGVNERTEAMPWPMPVLEVVLSALEGAQVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILVWLDDILGYAESEEELLQLLDQVLARCEAYGLKLHAKKCDFFEIEVKWCGKMVSAAGVRHYPD 672
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6G0MLJ8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MLJ8_9STRA) HSP 1 Score: 177 bits (448), Expect = 7.310e-45 Identity = 103/271 (38.01%), Postives = 144/271 (53.14%), Query Frame = 1
Query: 460 ARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPE 1251
AR +GL GV +LR+I++ +FR DPP V PL V V +A+ +A+ R S D +LD H KL + G+VF N ++R S V KK+ RM D R VN PMP LE + + GA VF LD +GYWQ+PL +QE+FT +T + +YTPTR P G +A +Y Q + ++ LG W+DDI +A EL++ L VL R + G+ A K + F E++WCGK+ S A V H P+
Sbjct: 311 ARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDILGYAESEDELLQLLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVRHCPD 580
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6A3YWA9_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YWA9_9STRA) HSP 1 Score: 176 bits (445), Expect = 7.540e-45 Identity = 101/268 (37.69%), Postives = 142/268 (52.99%), Query Frame = 1
Query: 460 ARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSH 1242
AR +GL GV +LR+I++ +FR DPP V PL V V +A+ +A+ R S D +LD H KL + G+VF N ++R S V KK+ RM D R VN P+P LE + + GA V +D +GYWQ+PL +QE+FT +T + +YTPTR P G +A +Y Q + ++ GLLG W+DDI +A EL+ L VL R + G+ A K + F E++WCGK+ S A V H
Sbjct: 482 ARAKGLSAMGVKRLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTLLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVRH 748 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig27886.7617.1 >prot_H-paniculata_contig27886.7617.1 ID=prot_H-paniculata_contig27886.7617.1|Name=mRNA_H-paniculata_contig27886.7617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=255bp MVKAKVADGRELDLTEQTVPLHIILASSWGDSRVTLPFMIVPGKLQVVILback to top mRNA from alignment at H-paniculata_contig27886:1535..2902+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig27886.7617.1 ID=mRNA_H-paniculata_contig27886.7617.1|Name=mRNA_H-paniculata_contig27886.7617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig27886:1535..2902+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig27886:1535..2902+ >mRNA_H-paniculata_contig27886.7617.1 ID=mRNA_H-paniculata_contig27886.7617.1|Name=mRNA_H-paniculata_contig27886.7617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at H-paniculata_contig27886:1535..2902+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |