mRNA_H-paniculata_contig27886.7617.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27886.7617.1
Unique NamemRNA_H-paniculata_contig27886.7617.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 8.180e-74
Identity = 178/444 (40.09%), Postives = 237/444 (53.38%), Query Frame = 1
Query:   10 LLDSGARVT-LSEDILHRLQQQWPGRELSRPYTGMVKAKVADGRELDLTEQTVPLHIILASSWGDSRVT-LPFMIVPGKLQVVILGGLMLRKQLGIDVMQQLKAMIEWRRGGNVIEDKAREQGNKK----------------------EQSLVRGRSVEVNVETLLRAAGA-----IEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALS-GDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTYRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPE 1251
            +LD G+ +T +S  I  RLQ  +P  ++        K KVADGR L +T++T P+ I L +SWG   V  L F ++PG  +VVILG   L K LGIDV + L A    R     +E  A +Q  +                       E+ + RG  ++++ E    A  A     +  A   GL    V +LR I+ +   +AFRR L  GDPPA+VEPL V +   AR  +AR R  +  K  WL       A  G+VF N QA   S AMA PKK  YR+V+D+RA N  +      MPN E     ++ A  + +LDLLQ YWQ PL P+AQEIFT+ T   +YTP R PQG+LNATSYFQ T+  +L GL    C VWVDD+  W     +L+  L ++L+RL+  G+Y AAHK   F   + WCGK+YS   V HDPE
Sbjct:  539 ILDPGSGLTTMSAGIASRLQAAFPDVQVVGGMQNPGKLKVADGRVLAVTQKTCPVQIALHTSWGLVSVDPLSFAVMPGNDEVVILGNPTL-KALGIDVYESLGACARSRASVAGVETAAYKQCRRVTLAVDALQQREGPEQVEPDPAVERLVARGPDMDMSPEEEASARSASLDSAVSSAAAAGLEEPHVGRLRGII-SERWNAFRRGLRHGDPPANVEPLRVTLKPGARPVKARPRVYNPIKTAWL-------AGLGLVFLNMQAVWASAAMATPKKGGYRLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKVYSEGQVEHDPE 970          
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 7.990e-70
Identity = 160/456 (35.09%), Postives = 238/456 (52.19%), Query Frame = 1
Query:   10 LLDSGARVT-LSEDILHRLQQQWPGRELSRPYTGMVKAKVADGRELDLTEQTVPLHIILASSWG----DSRVTLPFMIVPGKLQVVILGGLMLRKQLGIDVMQQLKAMIEWRRGGNVIEDKAREQGNKKEQSLVRGRSVEVNVETLLRAAG-----------------------------------AIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKD----TYRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHD 1245
            +LDSGA +T +S  +  +LQ++ P   +        + K  +GR + +TE+T P+ + + + WG    D R    F ++PG   VVI+G   L K LGIDV +   AM +     + ++++  E            R + V+VE   + A                                    A++ A   GL P G+ +LR++V +   + FRR + GDPPA+V P+ V +   A+  +ARLR+ + DK +WL      L   G+V+ N QA   S  M  PK+     TYR V D+RAVN  I  S  PMP+LE   + ++ A+ + +LD+LQGYW MPL P+AQEIFTM+    +Y+P R PQGVLNATSY+Q TM  +L  L    C VWVDDI  W    ++L+  L ++L R +  G++ AAHK   +   ++WCGK+YS   + HD
Sbjct:  431 ILDSGAGLTAMSASVAQKLQKKCPDVSVVVSTDHPHQVKTVEGRLVTVTEKTCPVRMTIHTQWGPVVLDPRA---FAVMPGTDDVVIIGDPTLTK-LGIDVYE---AMAQ-----HALKERDMEVRGVDTPGFHEARRISVSVEAFTQRAAPDPPDAAVERLVARGPDMVMTPAEEEAGRADALDRAVDSAADAGLSPWGLDRLRQVV-DRRFNVFRRGVRGDPPANVPPMTVKLKTGAKPVKARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKVYSKGVIEHD 870          
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6A3L091_9STRA (RNA-directed DNA polymerase n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L091_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.290e-48
Identity = 131/420 (31.19%), Postives = 218/420 (51.90%), Query Frame = 1
Query:    1 VDILLDSGA-RVTLSEDILHRLQQQWPGRELSRPYTGMVKAKVADGRELDLTEQ-TVPLHIILASSWGDSRVTLPFMIVPGKLQVVILGGLMLRKQLGIDVMQQLKAMIEWRRGGNVIEDKAREQGNKKEQSLVRGRSVEVNVETLLRAAGAIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDT-YRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPE 1251
            V  ++DSGA +  + + ++  L    PG  + RP    V A +ADG ++  T+  T+ L ++ A+   + R     +++PG     +LG   LR  LGIDV +Q++ +        + +D A ++  + E        ++  V  LL      +EAR  G+    +A++R +++  +   +R  +  DP A V+PL V +   A+  RA+ R  +  ++ +L E   +L +   +  N QAR  S  + V K    +R+  DYR +N++  P    MPNL      + GA  F   DLL+G+WQ+PL P  QE+F+ +T   VYTPTR PQG  ++  +FQ  +  +LA LL + C +W+DDI ++A    E +R  R   E ++  G+  +  K  LF+ ++ WCGK+ SG  + HDPE
Sbjct:  178 VPYIVDSGADKSMVPQRVVEELISVSPGLAM-RPLDAPVAATLADGTDVTCTQSVTLDLQLVTAAGIVNVRGAC-CLVLPG---TFLLGDETLRA-LGIDVTRQIEQLAT----PTIADDGADDEFAEPEYGPTEDDVIDEGVRHLL------DEARENGVGEEHLAEMR-VLLELYRDLWRVNVGPDPAARVDPLQVTLVEGAKPYRAKARKYAPLQSTFLRECTEELERHDFIRRNDQARWASPVVPVKKPGGGFRITTDYRVINSMTVPIAGTMPNLASAAGAVRGAVAFARFDLLKGFWQLPLHPNCQEMFSFLTEDAVYTPTRVPQGATDSALHFQAQLQRILAPLLHRNCLLWIDDILLFASSMDEFLRVFREFFELIKDHGLKLSVTKCVLFQPQVLWCGKMVSGTDIQHDPE 580          
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 4.110e-47
Identity = 147/416 (35.34%), Postives = 205/416 (49.28%), Query Frame = 1
Query:   94 RPYTGMVKAKVADGRE-LDLTEQTVPLHIILASSWGDSRVTLPFM--IVPGKLQVVILGGLMLRKQLGIDVMQQL---------------KAMIEWRRGGNVIEDKAREQGNKKEQS------LVRGR---SVEVNVETLLRAAG---AIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALS-GDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTYRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDP 1248
            R +T   + KVADGR  L++ ++T P+ I L +SWG   V  PF   ++ G  +VVILG   L K LGIDV + L                A  E RR    ++   R +G ++ +       LV  R    +    E   R+A    A+  A   GL    V +LR I+     +AFR  +  GDPPA+VEPL V +   A   +AR R+ +  K  WL          G+VF N QA   S AMA PKK  YR+++D+RA NN +      MPN E      +      +LDLL+ Y Q PL P+AQ+IFT+ T + ++TP R PQG+LNATSYFQ T+  +L GL    C VWVD +        +L+  L +++ERL   G+      A+  R      G+    A +S  P
Sbjct:  341 RGHTKPGELKVADGRRVLEVIQKTCPVRIALHTSWGLVSVD-PFSLAVMTGNDEVVILGNPTL-KALGIDVYESLGTCSRSRASVMGVQTTAWKECRRVTLAVDALQRSEGREQVEQDPAVKRLVAQRPHADMSPEEEASARSASLDSAVSSAVVAGLDEPHVGRLRSII-RERWNAFRPGMRPGDPPANVEPLRVTLKPGALPVKARPRTYNPIKTAWLAGCMASPVVLGLVFLNMQAVSASAAMATPKKGGYRLLSDFRAANNQVEKVPGVMPNPEASMAQFSATKFHGSLDLLRAYCQRPLSPEAQKIFTIATPRGLHTPKRVPQGILNATSYFQATLSRILEGLN---CLVWVDGVVNRGMEEDDLLNTLDMIVERLDGAGLTWPPTNARFLRPASHGAGRCTPRARLSMIP 750          
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6A3GM82_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GM82_9STRA)

HSP 1 Score: 176 bits (445), Expect = 8.530e-47
Identity = 103/268 (38.43%), Postives = 142/268 (52.99%), Query Frame = 1
Query:  460 ARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSH 1242
            AR +GL   GV +LR+I++     +FR     DPP  V PL V V  +A+  +A+ R  S D   +LD H  KL + G+VF N ++R  S    V KK+         RM  D R VN        PMP LE +   + GA V   LD  +GYWQ+PL   +QE+FT +T + +YTPTR P G  +A +Y Q  + ++   LLG     W+DDI  +A    EL++ L  VL R +V G+   A K + F  E++WCGK  S A V H
Sbjct:   44 ARAKGLSAKGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVTVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPMPVLEVVLGALEGAKVVFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILAWLDDILGYAESEDELLQLLDQVLARCEVYGLKLHAKKCEFFEIEVKWCGKTVSAAGVRH 310          
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6G0NWQ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWQ3_9STRA)

HSP 1 Score: 170 bits (430), Expect = 4.120e-46
Identity = 97/259 (37.45%), Postives = 137/259 (52.90%), Query Frame = 1
Query:  487 GVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSH 1242
            GV +LR+I++     +FR     DPP  V PL V V  +A+  +A+ R  S D   +LD H  KL + G+VF N ++R  S    V KK+         RM  D R VN        P+P LE +   + GA V   +D  +GYWQ+PL   +QE+FT +T + +YTPTR P G  +A +Y Q  + ++  GLLG     W+DDI  +A    EL+  L  VL R +  G+   A K + F  E++WCGK+ S A V H
Sbjct:   18 GVKRLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTMLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVRH 275          
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6A4AUS0_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4AUS0_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.490e-45
Identity = 98/267 (36.70%), Postives = 139/267 (52.06%), Query Frame = 1
Query:  472 GLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPE 1251
            GL  +G AKLR  VM   +  FR     DPP  V P+ V +  DAR  RA+ R  S +   +LD H   L   G+V+ N ++R  S    V K++         RM  D R+VN    P   PMP L+ +   + GA VF  LD  +GYWQ+PL P +QE+++ VT + +YTPTR P G  +A +Y Q  + ++   L+G     W+DDI  +A     L+  L  VL R +  G+   A K + F  E++WCG++ S   V H PE
Sbjct:    2 GLSLDGRAKLR-AVMRVRVDNFRLEFGNDPPVRVTPMQVRLKDDARPVRAQPRPYSPNDRAFLDRHTAALLAHGLVYKNHRSRWASAPRIVRKREQDVDPTADPRMTIDTRSVNERTEPMSWPMPVLDVVLGELEGARVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGATDAVAYCQGVVDEIFGDLIGDGILAWLDDILGYAENESALLELLDKVLSRCEAYGLKLHAKKCQFFATEVKWCGRVISADGVKHYPE 267          
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A2P4WWJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWJ1_9STRA)

HSP 1 Score: 178 bits (452), Expect = 2.010e-45
Identity = 103/271 (38.01%), Postives = 145/271 (53.51%), Query Frame = 1
Query:  460 ARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPE 1251
            AR +GL   GV +LR+I++     +FR     DPP  V PL V V  +A+  +A+ R  S +   +LD H  KL + G+V  N ++R  S    V KK+         RM  D R VN        PMP LE +   + GA VF  LD  +GYWQ+PL   +QE+FT +T + +YTPTR P G  +A +Y Q  + ++   LLG    VW+DDI  +A   +EL++ L  VL R +  G+   A K   F  E++WCGK+ S A V H P+
Sbjct:  403 ARAKGLSAKGVKRLREILLRRQ-DSFRLEFGSDPPVKVAPLQVRVKVNAQPTKAQPRRYSSNDKAFLDRHTAKLQEFGLVSLNHRSRWASAPRIVRKKEQGSDPTADPRMTIDTRGVNERTEAMPWPMPVLEVVLSALEGAQVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILVWLDDILGYAESEEELLQLLDQVLARCEAYGLKLHAKKCDFFEIEVKWCGKMVSAAGVRHYPD 672          
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6G0MLJ8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MLJ8_9STRA)

HSP 1 Score: 177 bits (448), Expect = 7.310e-45
Identity = 103/271 (38.01%), Postives = 144/271 (53.14%), Query Frame = 1
Query:  460 ARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPE 1251
            AR +GL   GV +LR+I++     +FR     DPP  V PL V V  +A+  +A+ R  S D   +LD H  KL + G+VF N ++R  S    V KK+         RM  D R VN        PMP LE +   + GA VF  LD  +GYWQ+PL   +QE+FT +T + +YTPTR P G  +A +Y Q  + ++    LG     W+DDI  +A    EL++ L  VL R +  G+   A K + F  E++WCGK+ S A V H P+
Sbjct:  311 ARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDILGYAESEDELLQLLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVRHCPD 580          
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Match: A0A6A3YWA9_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YWA9_9STRA)

HSP 1 Score: 176 bits (445), Expect = 7.540e-45
Identity = 101/268 (37.69%), Postives = 142/268 (52.99%), Query Frame = 1
Query:  460 ARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSH 1242
            AR +GL   GV +LR+I++     +FR     DPP  V PL V V  +A+  +A+ R  S D   +LD H  KL + G+VF N ++R  S    V KK+         RM  D R VN        P+P LE +   + GA V   +D  +GYWQ+PL   +QE+FT +T + +YTPTR P G  +A +Y Q  + ++  GLLG     W+DDI  +A    EL+  L  VL R +  G+   A K + F  E++WCGK+ S A V H
Sbjct:  482 ARAKGLSAMGVKRLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTLLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVRH 748          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27886.7617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE8.180e-7440.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE7.990e-7035.09Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6A3L091_9STRA1.290e-4831.19RNA-directed DNA polymerase n=6 Tax=Phytophthora T... [more]
A0A6H5JCK9_9PHAE4.110e-4735.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3GM82_9STRA8.530e-4738.43Reverse transcriptase domain-containing protein (F... [more]
A0A6G0NWQ3_9STRA4.120e-4637.45Reverse transcriptase domain-containing protein n=... [more]
A0A6A4AUS0_9STRA1.490e-4536.70Reverse transcriptase domain-containing protein (F... [more]
A0A2P4WWJ1_9STRA2.010e-4538.01Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6G0MLJ8_9STRA7.310e-4538.01Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6A3YWA9_9STRA7.540e-4537.69Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27886contigH-paniculata_contig27886:1535..2902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue8.7e-14
Seed eggNOG ortholog164328.Phyra86868
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGV8@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1251
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27886.7617.1prot_H-paniculata_contig27886.7617.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27886 1643..2524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.8064418-UTR-H-paniculata_contig27886:1534..16421622929842.8064418-UTR-H-paniculata_contig27886:1534..1642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27886 1535..1642 +
1691481035.464295-UTR-H-paniculata_contig27886:1534..16421691481035.464295-UTR-H-paniculata_contig27886:1534..1642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27886 1535..1642 +
1622929842.8572977-UTR-H-paniculata_contig27886:2524..29021622929842.8572977-UTR-H-paniculata_contig27886:2524..2902Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27886 2525..2902 +
1691481035.4952614-UTR-H-paniculata_contig27886:2524..29021691481035.4952614-UTR-H-paniculata_contig27886:2524..2902Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27886 2525..2902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.8243449-CDS-H-paniculata_contig27886:1642..19821622929842.8243449-CDS-H-paniculata_contig27886:1642..1982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27886 1643..1982 +
1691481035.4762578-CDS-H-paniculata_contig27886:1642..19821691481035.4762578-CDS-H-paniculata_contig27886:1642..1982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27886 1643..1982 +
1622929842.8396485-CDS-H-paniculata_contig27886:2099..25241622929842.8396485-CDS-H-paniculata_contig27886:2099..2524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27886 2100..2524 +
1691481035.4858942-CDS-H-paniculata_contig27886:2099..25241691481035.4858942-CDS-H-paniculata_contig27886:2099..2524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27886 2100..2524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27886.7617.1

>prot_H-paniculata_contig27886.7617.1 ID=prot_H-paniculata_contig27886.7617.1|Name=mRNA_H-paniculata_contig27886.7617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=255bp
MVKAKVADGRELDLTEQTVPLHIILASSWGDSRVTLPFMIVPGKLQVVIL
GGLMLRKQLGIDVMQQLKAMIEWRRGGNVIEDKAREQGNKKEQSLVRGRS
VEVNVETLLRAAGAIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGD
PPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFAN
PQARLCSVAMAVPKKDTYRMVADYRAVNNLIAPSGMPMPNLEEIERGMAG
ASVF*
back to top

mRNA from alignment at H-paniculata_contig27886:1535..2902+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27886.7617.1 ID=mRNA_H-paniculata_contig27886.7617.1|Name=mRNA_H-paniculata_contig27886.7617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig27886:1535..2902+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGATATACTGCTGGACTCTGGGGCGCGTGTGACTTTGTCAGAAGACAT CCTCCACCGGCTGCAGCAGCAGTGGCCGGGGCGGGAACTCTCCAGGCCGT ATACCGGCATGGTGAAGGCAAAGGTGGCTGATGGACGCGAGTTGGACCTG ACCGAGCAGACGGTTCCGCTACACATCATTCTCGCCTCCAGCTGGGGTGA CTCGCGGGTCACGCTGCCGTTCATGATAGTACCGGGGAAATTACAGGTGG TCATTCTCGGCGGACTGATGCTGCGGAAGCAACTGGGTATTGACGTGATG CAACAGCTAAAGGCGATGATAGAGTGGCGAAGAGGCGGCAACGTGATAGA GGACAAGGCGCGTGAGCAAGGAAACAAGAAAGAGCAAAGCCTGGTGCGCG GTCGAAGCGTTGAAGTAAATGTGGAAACTCTGTTGCGAGCCGCGGGAGGT GCGAATAATGAGAAAGTTGAAGATGAAGTATCGATCGCAATGGTACGGGC AGGGCCAGACATGTTCATGACAAAGGCCGAGGAGATACGAGAGAGGGCAG CGGCGTTGGAGTCAGCAATAGAAGAGGCGAGGACCGAGGGTCTGCCGCCG AACGGAGTCGCGAAGTTAAGAAAAATTGTGATGAACTCCCACTTACATGC GTTTCGGCGGGCGCTGAGCGGAGATCCACCGGCGGACGTGGAACCGCTGG GGGTGCATGTACCCGCGGACGCGCGAGCCGCCCGGGCGCGGCTGCGCTCG ATGTCGCGCGACAAGGCGGAATGGCTGGATGAGCATTTCACGAAGCTGGC ACAGGCAGGTATGGTGTTCGCAAATCCCCAGGCAAGGTTATGCAGCGTGG CGATGGCAGTGCCCAAGAAGGACACCTATCGAATGGTGGCCGACTACCGC GCAGTAAACAACCTGATCGCGCCCTCGGGGATGCCGATGCCAAACTTGGA GGAGATCGAGCGAGGCATGGCGGGAGCCAGCGTGTTCTGAACGCTGGATC TGCTGCAGGGCTACTGGCAGATGCCCCTCGATCCTCAAGCGCAAGAGATC TTCACGATGGTCACGGCCAAGAGGGTATACACGCCTACCAGAGATCCTCA GGGAGTGTTAAATGCGACTAGTTATTTCCAGAGGACGATGGGAGACGTAC TGGCAGGCTTGCTCGGAAAAGTCTGTGAAGTATGGGTTGATGACATAGGA ATATGGGCCGGTAGGTGGCAGGAACTGATGCGGAGACTGCGGGTGGTGCT GGAGCGGCTACAGGTACGCGGTATTTATGCCGCGGCTCACAAGGCGAAGC TGTTTCGGCGGGAGATGCGATGGTGCGGGAAAATTTACTCGGGGGCGACG GTCTCCCATGATCCGGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig27886:1535..2902+

>mRNA_H-paniculata_contig27886.7617.1 ID=mRNA_H-paniculata_contig27886.7617.1|Name=mRNA_H-paniculata_contig27886.7617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at H-paniculata_contig27886:1535..2902+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAGGCAAAGGTGGCTGATGGACGCGAGTTGGACCTGACCGAGCA
GACGGTTCCGCTACACATCATTCTCGCCTCCAGCTGGGGTGACTCGCGGG
TCACGCTGCCGTTCATGATAGTACCGGGGAAATTACAGGTGGTCATTCTC
GGCGGACTGATGCTGCGGAAGCAACTGGGTATTGACGTGATGCAACAGCT
AAAGGCGATGATAGAGTGGCGAAGAGGCGGCAACGTGATAGAGGACAAGG
CGCGTGAGCAAGGAAACAAGAAAGAGCAAAGCCTGGTGCGCGGTCGAAGC
GTTGAAGTAAATGTGGAAACTCTGTTGCGAGCCGCGGGAGATGGTGAAGG
CAAAGGTGGCTGATGGACGCGAGTTGGACCTGACCGAGCAGACGGTTCCG
CTACACATCATTCTCGCCTCCAGCTGGGGTGACTCGCGGGTCACGCTGCC
GTTCATGATAGTACCGGGGAAATTACAGGTGGTCATTCTCGGCGGACTGA
TGCTGCGGAAGCAACTGGGTATTGACGTGATGCAACAGCTAAAGGCGATG
ATAGAGTGGCGAAGAGGCGGCAACGTGATAGAGGACAAGGCGCGTGAGCA
AGGAAACAAGAAAGAGCAAAGCCTGGTGCGCGGTCGAAGCGTTGAAGTAA
ATGTGGAAACTCTGTTGCGAGCCGCGGGAGCAATAGAAGAGGCGAGGACC
GAGGGTCTGCCGCCGAACGGAGTCGCGAAGTTAAGAAAAATTGTGATGAA
CTCCCACTTACATGCGTTTCGGCGGGCGCTGAGCGGAGATCCACCGGCGG
ACGTGGAACCGCTGGGGGTGCATGTACCCGCGGACGCGCGAGCCGCCCGG
GCGCGGCTGCGCTCGATGTCGCGCGACAAGGCGGAATGGCTGGATGAGCA
TTTCACGAAGCTGGCACAGGCAGGTATGGTGTTCGCAAATCCCCAGGCAA
GGTTATGCAGCGTGGCGATGGCAGTGCCCAAGAAGGACACCTATCGAATG
GTGGCCGACTACCGCGCAGTAAACAACCTGATCGCGCCCTCGGGGATGCC
GATGCCAAACTTGGAGGAGATCGAGCGAGGCATGGCGGGAGCCAGCGTGT
TCTGACAATAGAAGAGGCGAGGACCGAGGGTCTGCCGCCGAACGGAGTCG
CGAAGTTAAGAAAAATTGTGATGAACTCCCACTTACATGCGTTTCGGCGG
GCGCTGAGCGGAGATCCACCGGCGGACGTGGAACCGCTGGGGGTGCATGT
ACCCGCGGACGCGCGAGCCGCCCGGGCGCGGCTGCGCTCGATGTCGCGCG
ACAAGGCGGAATGGCTGGATGAGCATTTCACGAAGCTGGCACAGGCAGGT
ATGGTGTTCGCAAATCCCCAGGCAAGGTTATGCAGCGTGGCGATGGCAGT
GCCCAAGAAGGACACCTATCGAATGGTGGCCGACTACCGCGCAGTAAACA
ACCTGATCGCGCCCTCGGGGATGCCGATGCCAAACTTGGAGGAGATCGAG
CGAGGCATGGCGGGAGCCAGCGTGTTCTGA
back to top