mRNA_H-paniculata_contig27886.7616.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27886.7616.1
Unique NamemRNA_H-paniculata_contig27886.7616.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27886.7616.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 347 bits (890), Expect = 6.840e-104
Identity = 184/398 (46.23%), Postives = 250/398 (62.81%), Query Frame = 1
Query:   70 ETERAAALESAIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKD----TYRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQGLASMRRPNTPGELMPFLQASNWMRTSVPELAVVVEPLREMLETFL-NNTRRTRRAADKIAITRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDASDSFWGSCVT 1248
            E  RA AL+ A++ A   GL P G+ +LR++V +   + FRR + GDPPA+V P+ V +   A+  +ARLR+ + DK +WL      L   G+V+ N QA   S  M  PK+     TYR V D+RAVN  I  S  PMP+LE   + ++ A+ + +LD+LQGYW MPL P+AQEIFTM+    +Y+P R PQGVLNATSY+Q TM  +L  L    C VWVDDI  W    ++L+  L ++L R +  G++ AAHK   +   ++WCGK+YS   + HD +R+ GLA++RRP T GELM FLQA NW+RTS+P ++ +V PLRE LE  +  N  RT+R A   AI    WT     +WE A + V+ AV LYHP A ++VL+FPDASD  WGS VT
Sbjct:  595 EAGRADALDRAVDSAADAGLSPWGLDRLRQVV-DRRFNVFRRGVRGDPPANVPPMTVKLKTGAKPVKARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKVYSKGVIEHDRDRLSGLANLRRPETAGELMQFLQAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVT 988          
BLAST of mRNA_H-paniculata_contig27886.7616.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 324 bits (831), Expect = 8.790e-96
Identity = 188/392 (47.96%), Postives = 238/392 (60.71%), Query Frame = 1
Query:   79 RAAALESAIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALS-GDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTYRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQGLASMRRPNTPGELMPFLQASNWMRTSVPELAVVVEPLREMLETFLNNTR-RTRRAADKIAITRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDASDSFWGSCVT 1248
            R+A+L+SA+  A   GL    V +LR I+ +   +AFRR L  GDPPA+VEPL V +   AR  +AR R  +  K  WL       A  G+VF N QA   S AMA PKK  YR+V+D+RA N  +      MPN E     ++ A  + +LDLLQ YWQ PL P+AQEIFT+ T   +YTP R PQG+LNATSYFQ T+  +L GL    C VWVDD+  W     +L+  L ++L+RL+  G+Y AAHK   F   + WCGK+YS   V HDPER+ GLA+MRRP T GELM FLQA NW+RTS+P +A VV PLR  LE  L   + RT+R A+  AI     T     AW  A + V+ AV L HP    +VL+FPDASD  WGS +T
Sbjct:  706 RSASLDSAVSSAAAAGLEEPHVGRLRGII-SERWNAFRRGLRHGDPPANVEPLRVTLKPGARPVKARPRVYNPIKTAWL-------AGLGLVFLNMQAVWASAAMATPKKGGYRLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAENRAIAADALTPALVEAWTAAQDLVARAVALSHPSPGCAVLMFPDASDEHWGSFLT 1086          
BLAST of mRNA_H-paniculata_contig27886.7616.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 3.680e-74
Identity = 163/382 (42.67%), Postives = 211/382 (55.24%), Query Frame = 1
Query:  157 KIVMNSHLHAFRRALSGDPPADV-----------EPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPK------KDTYRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQGLASMRRPNTPGELMPFLQASNWMRTSVPELAVVVEPLREMLETFLNNT-RRTRRAADKIAITRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDASDSFWGSCVT 1248
            K  M+ H  A  RALS  P   V           EPL + +    +  + + R  S  KA WL      L   GMV    QA   S AM VPK      +  YR+  DY   N       + +P+ E     + GA+ F  LDLLQGYWQMPL   A+EIF++ T + ++ PTR PQ VLNAT YFQ  M ++L GL    C VWVDD   W     +L+  L  +L RLQ  GI+AAAHK   F  ++RWCGK+YSG  V+ DPER+QGL  MRRP T G+LM FLQA  W+RTS+  LA V+EP+R +LE  + +  R+T+  A   AI    WT     AW +A + V+ AV L HP+   +VL+FPDAS+  WGS +T
Sbjct:  361 KEPMDVHDEAVTRALSRGPNMSVPPEEEEVQRKVEPLKMTLKPGVQHVQEKARVYSPAKATWLSGCMAALVAMGMVVKTIQAVWASPAMTVPKPGRVGREGEYRLGNDYLRANLQCEKVPIVVPSQEVQVSMLQGATCFGKLDLLQGYWQMPLAESAREIFSIATPEGLFEPTRVPQDVLNATGYFQAVMTEILQGLN---CAVWVDDDIWWGIDETDLLNTLDEILWRLQDNGIFAAAHKCPFFDTKIRWCGKVYSGGQVASDPERLQGLTDMRRPETAGKLMQFLQAVKWLRTSLSRLAEVMEPVRTLLEVNMASAPRQTKSIAPNRAIKCEAWTAGMVEAWISAQDLVAHAVALSHPKDGFAVLMFPDASEEHWGSFLT 739          
BLAST of mRNA_H-paniculata_contig27886.7616.1 vs. uniprot
Match: A0A0G4J790_PLABS (Reverse transcriptase domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J790_PLABS)

HSP 1 Score: 252 bits (643), Expect = 1.920e-72
Identity = 141/391 (36.06%), Postives = 218/391 (55.75%), Query Frame = 1
Query:   85 AALESAIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDT--YRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQGLASMRRPNTPGELMPFLQASNWMRTSVPELAVVVEPLREMLETFLNNTRRTRRAA-DKIAITRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDASDSFWGSCVT 1248
            A+L   I +AR  G+   GVA+LR +++  H++ FR  L  D P ++EP+   +  DA   R R RS +  + E+LDE    L +  +++ N  +R  S  + V K +   YR+  D R VN+   P+  PMPN+E   R +AG + F T+D  +G+W MP+  + QEIF+ +T   VYTPTR  QG  N+   FQ  +G +   +   +  +W+DD+  +A     L+ +L  VLER + R +     K  LF RE++WCG+IYS   + HDPER++ L SM RPNT  EL  F+ A+NWMRTSVP  A ++ PL+E+ +      +R + ++   I +    WT+  + A+E     + + V L +P++D    +F DASD  W   +T
Sbjct:  250 ASLTRLIHQARLNGMSRQGVARLR-LILRRHVNEFRTQLGQDGPVNIEPMITKLQPDATPYRCRPRSYNPKQKEFLDEMIKMLLENNLIYLNMNSRWASPVLVVKKPNGKGYRLCVDLRQVNSRTVPTAWPMPNIEAASRKLAGMTCFFTIDAHKGFWLMPIAKECQEIFSFMTDDGVYTPTRSIQGATNSALQFQARIGKIFDDMKDHLL-IWIDDLLGFAKTEDILLHQLARVLERARERNLKFNPDKCVLFARELKWCGRIYSRDGIRHDPERIEALTSMPRPNTFKELQQFIWAANWMRTSVPGYAYIIAPLQELTDKANEEMKRIQSSSPSSIRLHDLGWTDRHSKAFEDIRFALIQHVQLAYPKSDHQTCLFTDASDLAWAPVIT 638          
BLAST of mRNA_H-paniculata_contig27886.7616.1 vs. uniprot
Match: A0A6A3GM82_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GM82_9STRA)

HSP 1 Score: 235 bits (600), Expect = 1.460e-69
Identity = 149/410 (36.34%), Postives = 210/410 (51.22%), Query Frame = 1
Query:   46 LPRLRRKSETERAAALESAIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQGLASMRRPNTPGELMPFLQASNWMRTSVPELAVVVEPLREMLETFLN--NTRRTRRAADKIAITRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDASDSFWGSCVT 1248
            LP LR    +     L+S +  AR +GL   GV +LR+I++     +FR     DPP  V PL V V  +A+  +A+ R  S D   +LD H  KL + G+VF N ++R  S    V KK+         RM  D R VN        PMP LE +   + GA V   LD  +GYWQ+PL   +QE+FT +T + +YTPTR P G  +A +Y Q  + ++   LLG     W+DDI  +A    EL++ L  VL R +V G+   A K + F  E++WCGK  S A V H  +RVQGL  M+ P T G+L  FL A NWMR S+PE   +   L  +LE  +    +R+  + A K  + +  W + + A        + + VPL HP     V ++ DAS   WG+  T
Sbjct:   22 LPSLRLHDSSAVHDMLDSKLAAARAKGLSAKGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVTVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPMPVLEVVLGALEGAKVVFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILAWLDDILGYAESEDELLQLLDQVLARCEVYGLKLHAKKCEFFEIEVKWCGKTVSAAGVRHCSDRVQGLVEMQPPQTAGDLQQFLCAVNWMRQSIPEYNRLTAGLYAVLEEAMKAAGSRKKVKLA-KFPLDQIGWGDPQLADLAAVKAALLKMVPLAHPSPTAEVCLYTDASQDSWGAVAT 429          
BLAST of mRNA_H-paniculata_contig27886.7616.1 vs. uniprot
Match: A0A6A3FJD6_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3FJD6_9STRA)

HSP 1 Score: 237 bits (605), Expect = 2.330e-68
Identity = 143/394 (36.29%), Postives = 202/394 (51.27%), Query Frame = 1
Query:   91 LESAIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQGLASMRRPNTPGELMPFLQASNWMRTSVPELAVVVEPLREMLETFLN-NTRRTRRAADKIAITRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDASDSFWGSCVT 1248
            +E  IE A   GL  +G AKLR  VM   ++ FR     DPP  V P+ V +  DAR  RA+ R  S +   +LD H   L   G+V+ N ++R  S    V K++         RM  D  +VN    P   PMP L+ +  G+ GA VF  LD L+GYWQ+PL P +QE+++ VT + +YTPTR P G  +A +Y    + ++   L+G     W+DDI  +A     L+  L  VL R    G+   A K + F  E++WCG++ S   V H PERVQGL  M  P T G+L  FL A NWMR S+PE   +   L + LE     ++ R +    KI +    W ++  A++E     +   V L HP     V ++ DAS  FWG+ V+
Sbjct:  212 VERKIEIAEQMGLTLDGRAKLR-AVMRVRVNNFRLEFGNDPPVRVAPMQVRLKDDARPVRAQPRRYSPNDRAFLDRHTAALLAHGLVYKNHRSRWASAPRIVRKREQDVDPTADPRMTIDTWSVNERTEPMSWPMPVLDVVLGGLEGARVFFVLDWLRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGATDAVAYCHGVVEEIFGDLVGDGILAWLDDILGYAENESALLELLDKVLSRCDAYGLKLHAKKCQFFATEVKWCGRVISADGVKHCPERVQGLVDMPPPRTAGDLQQFLCAVNWMRRSIPEYTRITANLYDALERAAKISSSRNKNVLAKIRLDDAGWGDKEIASFEKIRGALLRMVSLAHPSPTAEVALYTDASQDFWGAMVS 604          
BLAST of mRNA_H-paniculata_contig27886.7616.1 vs. uniprot
Match: A0A6G0XU41_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XU41_9STRA)

HSP 1 Score: 241 bits (616), Expect = 3.360e-67
Identity = 137/391 (35.04%), Postives = 216/391 (55.24%), Query Frame = 1
Query:   85 AALESAIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAV--PKKDTYRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQGLASMRRPNTPGELMPFLQASNWMRTSVPELAVVVEPLREMLET-FLNNTRRTRRAADKIAITRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDASDSFWGSCVT 1248
            A L+  + E R  G   +   +L K+++  +    R  L  DPP +VEPL V + ADA+  R + R  S+++ E++ +H  +L  AG+ + NP+++ CS  + V  P+ + +RM  D R  N        PMP LE I   + GA VF TLD  +GYWQ  L P +QE+F+ +T   VYTPTR   G  ++ +Y Q ++ ++ A  L +   +W+DD+  ++   + L+  L  VL+  + RG+     K + ++ E RWCG+I SG  V HDPER++ L  ++ P T  +L  F+ A NWMR S+P   VVV+PL +++E  +     RTR+   KI ++   W         +  + + +AV   HP++D+ VL+F DASD  WG  VT
Sbjct:  537 AKLKEKVGECRVAGCDDSYAVELGKLLVK-YEDVSRLKLGRDPPVNVEPLRVTLKADAKPVRCKARRYSKEQREFMAKHVDELQAAGLCYRNPRSKRCSAPLIVKKPEANEFRMTVDVRPANAQTERILWPMPMLEVILDHLCGAQVFFTLDFFKGYWQFALHPDSQEMFSFLTDIGVYTPTRVLMGGTDSVAYCQSSVQEMFADELYRCLLIWLDDLLGYSKTKEGLLAALERVLKICEFRGLQLNPKKCRFYQTEARWCGRIVSGNGVKHDPERIKALQDLKVPVTGQDLQQFICAMNWMRMSIPRYNVVVKPLTDLMEKIYALAGGRTRQKVAKIRLSEVGWNASHVDCLTSCKKALGQAVTFAHPKSDKLVLLFADASDLHWGGVVT 926          
BLAST of mRNA_H-paniculata_contig27886.7616.1 vs. uniprot
Match: A0A6G0WDP6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDP6_9STRA)

HSP 1 Score: 241 bits (616), Expect = 3.910e-67
Identity = 138/391 (35.29%), Postives = 217/391 (55.50%), Query Frame = 1
Query:   85 AALESAIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAV--PKKDTYRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQGLASMRRPNTPGELMPFLQASNWMRTSVPELAVVVEPLREMLET-FLNNTRRTRRAADKIAITRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDASDSFWGSCVT 1248
            A L+  + E R  G   +   +L K+++  +   FR  L  DPP  VEPL V + ADA+  R + R  S+++ E++ ++  +L  AG+ + NP+++ CS  + V  P+ + +RM  D R VN        PMP LE I   + GA VF TLD  +GYWQ  L P +QE+F+ +T   VYTPTR   G  ++ +Y Q ++ ++ A  L +  ++W+DD+  ++   + L+  L  VL+  + RG+     K + ++ E RWCG+I SG  V HDPER++ L  ++ P T  +L  F+ A NWMR S+P   VVV+PL + +E  +     RTR+   KI ++   W         +  + + +AV L HP++D+ V +F DASD  WG  VT
Sbjct:  617 AKLKEKVGECRVAGCDDSYAVELGKLLVK-YEDVFRLKLGRDPPVKVEPLRVTLKADAKPVRCKARRNSKEQREFMAKYVDELQAAGLCYRNPRSKWCSAPLIVKKPEANEFRMTVDVRPVNAQTERILWPMPMLEVILDHLCGAQVFFTLDFFKGYWQFALHPDSQEMFSFLTDIGVYTPTRVLMGGTDSVAYCQSSVQEMFADELYRCLQIWLDDLLGYSKTKEGLLAALERVLKICEFRGLKLNPKKCRFYQTEARWCGRIVSGDGVKHDPERIKVLQDLKVPVTGQDLQQFICAMNWMRMSIPRYNVVVKPLTDPMEKIYALAGGRTRQKVAKIRLSEVGWNASHVDCLTSCKKALGQAVTLAHPKSDKLVCVFADASDLHWGGVVT 1006          
BLAST of mRNA_H-paniculata_contig27886.7616.1 vs. uniprot
Match: A0A6G0XEE8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XEE8_9STRA)

HSP 1 Score: 239 bits (611), Expect = 2.230e-66
Identity = 136/391 (34.78%), Postives = 216/391 (55.24%), Query Frame = 1
Query:   85 AALESAIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAV--PKKDTYRMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQGLASMRRPNTPGELMPFLQASNWMRTSVPELAVVVEPLREMLET-FLNNTRRTRRAADKIAITRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDASDSFWGSCVT 1248
            A L+  + E R  G   +   +L K+++  +   FR  L  DPP  V PL V + ADA+  R + R  S+++ E++ +H  +L  AG+ + NP+++ CS  + V  P+ + +RM  D R VN        PMP LE I   + GA VF TLD  +GYWQ  L P +QE+F+ +T   +YTPTR   G  ++ +Y Q ++ ++ A  L +   +W++D+  ++   + L+  L  VL+  + R +     K + ++ E RWCG+I SG  V HDPER++ L  ++ P T  +L  F+ A NWMR S+P   VVV+PL +++E  +     RTR+   KI ++   W         T  + + +AV L HP++D+ V +F DASD  WG+ VT
Sbjct:  667 AKLKEKVGECRAAGCDDSYAIELGKLLVK-YEDVFRLKLGRDPPVKVGPLRVTLKADAKPVRCKARRYSKEQREFMAKHVDELQAAGLCYRNPRSKWCSAPLIVKKPEANEFRMTVDVRPVNAQTERILWPMPMLEVILDHLCGAQVFFTLDFFKGYWQFALHPDSQEMFSFLTDIGLYTPTRVTMGGTDSVAYCQSSVQEMFADELYRCLLIWINDLLGYSKTKEGLLAALERVLKICEFRRLKLNPKKCRFYQTEARWCGRIVSGDGVKHDPERIKALQDLKVPVTGQDLQQFICAMNWMRMSIPRYNVVVKPLTDLMEKIYALAGGRTRQKVAKIKLSEAGWNASHVNCLTTCKKVLGQAVTLAHPKSDKLVCVFADASDLHWGAVVT 1056          
BLAST of mRNA_H-paniculata_contig27886.7616.1 vs. uniprot
Match: H3H4S7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4S7_PHYRM)

HSP 1 Score: 239 bits (609), Expect = 4.140e-66
Identity = 144/395 (36.46%), Postives = 207/395 (52.41%), Query Frame = 1
Query:   91 LESAIEEARTEGLPPNGVAKLRKIVMNSHLHAFRRALSGDPPADVEPLGVHVPADARAARARLRSMSRDKAEWLDEHFTKLAQAGMVFANPQARLCSVAMAVPKKDTY-------RMVADYRAVNNLIAPSGMPMPNLEEIERGMAGASVF*TLDLLQGYWQMPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGKVCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMRWCGKIYSGATVSHDPERVQGLASMRRPNTPGELMPFLQASNWMRTSVPELAVVVEPLREMLETF--LNNTRRTRRAADKIAITRGDWTEERAAAWETATERVSEAVPLYHPRADRSVLIFPDASDSFWGSCVT 1248
            LES +E A   GL  +G AKLR I +     +FR     DPP  V P+ V +   A   RA+ R  S +   +LD H T L + G++F N ++R  S    V KK+         RM  D R+VN    P   PMP LE +   + GA VF  LD  +GYWQ+PL P +QEI++ VT + +YTPTR P G  +A +Y Q  + ++   LLG     W+DDI  +A     L+  L  VLER +  G+   A K + F  E++WCG++ S   V H PER+QGL  M+ P T G+L  FL A NWMR S+PE   +   L + L+    +  +R+  + A ++ +    W  +  A  E   + +   VPL HP     + ++ DAS+ +WG+ VT
Sbjct:  614 LESKVEIATRMGLTLDGSAKLRGI-LQMRADSFRLEFGHDPPVRVAPMQVRLKPGATPIRAQPRRYSPNDRAFLDRHTTTLMKHGLIFKNHRSRWASAPRIVKKKEQADDPLADPRMTIDTRSVNERTEPMPWPMPVLEVVIGELEGAKVFFVLDWFRGYWQLPLHPDSQEIYSFVTHRGIYTPTRVPMGATDAVAYCQGVVEEIFGDLLGTCILAWLDDILGYAEDEASLLEVLDKVLERCEKFGLKLHAKKCQFFATEVKWCGRMISAQGVRHCPERIQGLVEMQAPQTAGDLQQFLCAVNWMRQSIPEFTRITAVLYDALDRAAQIAGSRKKVKLA-RVRLEDVSWGADEMAGVEAVRDALLNMVPLAHPSPTADLCLYSDASNDYWGAVVT 1006          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27886.7616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE6.840e-10446.23Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE8.790e-9647.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L028_9PHAE3.680e-7442.67CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A0G4J790_PLABS1.920e-7236.06Reverse transcriptase domain-containing protein n=... [more]
A0A6A3GM82_9STRA1.460e-6936.34Reverse transcriptase domain-containing protein (F... [more]
A0A6A3FJD6_9STRA2.330e-6836.29Reverse transcriptase domain-containing protein n=... [more]
A0A6G0XU41_9STRA3.360e-6735.04Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A6G0WDP6_9STRA3.910e-6735.29Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6G0XEE8_9STRA2.230e-6634.78Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
H3H4S7_PHYRM4.140e-6636.46Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27886contigH-paniculata_contig27886:804..3247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue4.8e-35
Seed eggNOG ortholog164328.Phyra85588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1248
Cds size693
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27886.7616.1prot_H-paniculata_contig27886.7616.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27886 2555..3247 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.7364113-UTR-H-paniculata_contig27886:803..8811622929842.7364113-UTR-H-paniculata_contig27886:803..881Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27886 804..881 +
1691481035.4257262-UTR-H-paniculata_contig27886:803..8811691481035.4257262-UTR-H-paniculata_contig27886:803..881Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27886 804..881 +
1622929842.7515752-UTR-H-paniculata_contig27886:2077..25541622929842.7515752-UTR-H-paniculata_contig27886:2077..2554Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27886 2078..2554 +
1691481035.4352262-UTR-H-paniculata_contig27886:2077..25541691481035.4352262-UTR-H-paniculata_contig27886:2077..2554Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27886 2078..2554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.7681782-CDS-H-paniculata_contig27886:2554..32471622929842.7681782-CDS-H-paniculata_contig27886:2554..3247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27886 2555..3247 +
1691481035.4511652-CDS-H-paniculata_contig27886:2554..32471691481035.4511652-CDS-H-paniculata_contig27886:2554..3247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27886 2555..3247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27886.7616.1

>prot_H-paniculata_contig27886.7616.1 ID=prot_H-paniculata_contig27886.7616.1|Name=mRNA_H-paniculata_contig27886.7616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
MPLDPQAQEIFTMVTAKRVYTPTRDPQGVLNATSYFQRTMGDVLAGLLGK
VCEVWVDDIGIWAGRWQELMRRLRVVLERLQVRGIYAAAHKAKLFRREMR
WCGKIYSGATVSHDPERVQGLASMRRPNTPGELMPFLQASNWMRTSVPEL
AVVVEPLREMLETFLNNTRRTRRAADKIAITRGDWTEERAAAWETATERV
SEAVPLYHPRADRSVLIFPDASDSFWGSCVT
back to top

mRNA from alignment at H-paniculata_contig27886:804..3247+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27886.7616.1 ID=mRNA_H-paniculata_contig27886.7616.1|Name=mRNA_H-paniculata_contig27886.7616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2444bp|location=Sequence derived from alignment at H-paniculata_contig27886:804..3247+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGACGCGCGGCACGACGGAAGACGACAGCCGGCAGAGGGCAGGCTGCC CCGGTTACGCAGAAAGTCGGAGACAGAGGTCGCGCTACGCAGAAGGTGTT CAAGCAAGAAAGAGGCTTCTCCGGCAGATGTTTCATATGTGGCAGGGTAG GGTACAAGCAAACAGAGTGCCGTAGTGGCGGCGGAGGCCAGAAGGCCAAC CAGGGACAGACGACAGACGCGTCTGCCCAGGCATCTGCCTCATCGCGCCC GGGACCGGGTGGTCAGAAATGGACTGGTCCTACCCACGACAAGGGAATGA CGGTGGCACAGCGTACAAGAAGCCAGGGGGTGGCGCCGCGCGGTGGACCG GGGGAAGTGACCGCCACGAAAGCCATTTTAACAGCTGGCGAGCGGGAGGA GTTCGTCACGGTTCAGGTGCCTAAGCGATTGTTCATCGACGATGGACTGG GGAGAGCCGAGTCGGTCGTCGAAACTTTGGTCTTGCAGCAGGCGGGACCG AGCATGCCGCCCCCACAATTGCAATCGGCGCCTGTGATGACGCCGCCGGT GTCTACCGCCACATACAGCTCAGATATGACCACTGGCTACGCACAGCTAC CAGTAACTGCGAGTGAAGGGGCTGAGGTGGGAAGCAATATGGGCGGAGGA GATAAAGTACACATAGAACACCTGGATCATCATCTGCGAGGGCGTCTGGA GTTACCGGGAGCGGCTGTCGGGGCAGTGAACGTTGATATACTGCTGGACT CTGGGGCGCGTGTGACTTTGTCAGAAGACATCCTCCACCGGCTGCAGCAG CAGTGGCCGGGGCGGGAACTCTCCAGGCCGTATACCGGCATGGTGAAGGC AAAGGTGGCTGATGGACGCGAGTTGGACCTGACCGAGCAGACGGTTCCGC TACACATCATTCTCGCCTCCAGCTGGGGTGACTCGCGGGTCACGCTGCCG TTCATGATAGTACCGGGGAAATTACAGGTGGTCATTCTCGGCGGACTGAT GCTGCGGAAGCAACTGGGTATTGACGTGATGCAACAGCTAAAGGCGATGA TAGAGTGGCGAAGAGGCGGCAACGTGATAGAGGACAAGGCGCGTGAGCAA GGAAACAAGAAAGAGCAAAGCCTGGTGCGCGGTCGAAGCGTTGAAGTAAA TGTGGAAACTCTGTTGCGAGCCGCGGGAGGTGCGAATAATGAGAAAGTTG AAGATGAAGTATCGATCGCAATGGTACGGGCAGGGCCAGACATGTTCATG ACAAAGGCCGAGGAGATACGAGAGAGGGCAGCGGCGTTGGAGTCAGCAAT AGAAGAGGCGAGGACCGAGGGTCTGCCGCCGAACGGAGTCGCGAAGTTAA GAAAAATTGTGATGAACTCCCACTTACATGCGTTTCGGCGGGCGCTGAGC GGAGATCCACCGGCGGACGTGGAACCGCTGGGGGTGCATGTACCCGCGGA CGCGCGAGCCGCCCGGGCGCGGCTGCGCTCGATGTCGCGCGACAAGGCGG AATGGCTGGATGAGCATTTCACGAAGCTGGCACAGGCAGGTATGGTGTTC GCAAATCCCCAGGCAAGGTTATGCAGCGTGGCGATGGCAGTGCCCAAGAA GGACACCTATCGAATGGTGGCCGACTACCGCGCAGTAAACAACCTGATCG CGCCCTCGGGGATGCCGATGCCAAACTTGGAGGAGATCGAGCGAGGCATG GCGGGAGCCAGCGTGTTCTGAACGCTGGATCTGCTGCAGGGCTACTGGCA GATGCCCCTCGATCCTCAAGCGCAAGAGATCTTCACGATGGTCACGGCCA AGAGGGTATACACGCCTACCAGAGATCCTCAGGGAGTGTTAAATGCGACT AGTTATTTCCAGAGGACGATGGGAGACGTACTGGCAGGCTTGCTCGGAAA AGTCTGTGAAGTATGGGTTGATGACATAGGAATATGGGCCGGTAGGTGGC AGGAACTGATGCGGAGACTGCGGGTGGTGCTGGAGCGGCTACAGGTACGC GGTATTTATGCCGCGGCTCACAAGGCGAAGCTGTTTCGGCGGGAGATGCG ATGGTGCGGGAAAATTTACTCGGGGGCGACGGTCTCCCATGATCCGGAGC GCGTACAGGGTTTGGCCTCCATGCGTCGGCCTAACACGCCAGGGGAGCTG ATGCCGTTTCTCCAGGCGTCAAACTGGATGAGAACGTCGGTGCCAGAGCT GGCTGTGGTGGTGGAGCCTCTGCGTGAGATGCTGGAGACGTTTCTAAACA ACACACGCCGGACGCGGCGTGCGGCGGACAAGATAGCCATAACAAGAGGA GACTGGACAGAGGAACGCGCGGCGGCGTGGGAGACAGCGACGGAGCGCGT CTCCGAGGCCGTGCCGCTATACCATCCGCGGGCGGACCGTAGTGTGCTGA TCTTTCCTGACGCAAGCGATAGTTTTTGGGGAAGCTGTGTGACG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig27886:804..3247+

>mRNA_H-paniculata_contig27886.7616.1 ID=mRNA_H-paniculata_contig27886.7616.1|Name=mRNA_H-paniculata_contig27886.7616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig27886:804..3247+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCTCGATCCTCAAGCGCAAGAGATCTTCACGATGGTCACGGCCAA
GAGGGTATACACGCCTACCAGAGATCCTCAGGGAGTGTTAAATGCGACTA
GTTATTTCCAGAGGACGATGGGAGACGTACTGGCAGGCTTGCTCGGAAAA
GTCTGTGAAGTATGGGTTGATGACATAGGAATATGGGCCGGTAGGTGGCA
GGAACTGATGCGGAGACTGCGGGTGGTGCTGGAGCGGCTACAGGTACGCG
GTATTTATGCCGCGGCTCACAAGGCGAAGCTGTTTCGGCGGGAGATGCGA
TGGTGCGGGAAAATTTACTCGGGGGCGACGGTCTCCCATGATCCGGAGCG
CGTACAGGGTTTGGCCTCCATGCGTCGGCCTAACACGCCAGGGGAGCTGA
TGCCGTTTCTCCAGGCGTCAAACTGGATGAGAACGTCGGTGCCAGAGCTG
GCTGTGGTGGTGGAGCCTCTGCGTGAGATGCTGGAGACGTTTCTAAACAA
CACACGCCGGACGCGGCGTGCGGCGGACAAGATAGCCATAACAAGAGGAG
ACTGGACAGAGGAACGCGCGGCGGCGTGGGAGACAGCGACGGAGCGCGTC
TCCGAGGCCGTGCCGCTATACCATCCGCGGGCGGACCGTAGTGTGCTGAT
CTTTCCTGACGCAAGCGATAGTTTTTGGGGAAGCTGTGTGACGATGCCCC
TCGATCCTCAAGCGCAAGAGATCTTCACGATGGTCACGGCCAAGAGGGTA
TACACGCCTACCAGAGATCCTCAGGGAGTGTTAAATGCGACTAGTTATTT
CCAGAGGACGATGGGAGACGTACTGGCAGGCTTGCTCGGAAAAGTCTGTG
AAGTATGGGTTGATGACATAGGAATATGGGCCGGTAGGTGGCAGGAACTG
ATGCGGAGACTGCGGGTGGTGCTGGAGCGGCTACAGGTACGCGGTATTTA
TGCCGCGGCTCACAAGGCGAAGCTGTTTCGGCGGGAGATGCGATGGTGCG
GGAAAATTTACTCGGGGGCGACGGTCTCCCATGATCCGGAGCGCGTACAG
GGTTTGGCCTCCATGCGTCGGCCTAACACGCCAGGGGAGCTGATGCCGTT
TCTCCAGGCGTCAAACTGGATGAGAACGTCGGTGCCAGAGCTGGCTGTGG
TGGTGGAGCCTCTGCGTGAGATGCTGGAGACGTTTCTAAACAACACACGC
CGGACGCGGCGTGCGGCGGACAAGATAGCCATAACAAGAGGAGACTGGAC
AGAGGAACGCGCGGCGGCGTGGGAGACAGCGACGGAGCGCGTCTCCGAGG
CCGTGCCGCTATACCATCCGCGGGCGGACCGTAGTGTGCTGATCTTTCCT
GACGCAAGCGATAGTTTTTGGGGAAGCTGTGTGACG
back to top