mRNA_H-paniculata_contig27765.7594.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27765.7594.1
Unique NamemRNA_H-paniculata_contig27765.7594.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27765.7594.1 vs. uniprot
Match: A0A6H5JPV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV6_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 9.930e-63
Identity = 140/399 (35.09%), Postives = 212/399 (53.13%), Query Frame = 1
Query:    1 MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQIHE--------------SQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYLRSM-------------------------GFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSALLDTAATKE---------STTGTMFFLANGLVHFSPRLQKITATSTAEAELIALAACAKQGTYLLNICRELGFQ-LDNFEVRSNNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 1050
            +P D  +  TR+VFK+KAD +FKARLV  G  Q                 S R+L A+A    W V+ LDV  AFLN      VY + APG E+  PTTG+  +  +                         G+  T SDPC+Y   S D   +L+++VDDILITG   +++   + +LM+ F +TD+GEV  ++G+EV R+ + GTL +SQ  Y   +L+R+GM  ANP  TPG   + +T      LL    T+          STTG +FFL  GL+ +  + + + A +T EAEL AL+  A++  Y+ N   E+GF+   +  + S++ GAL +A+N+ +S+R+KHIA+RF  LR+  + + + + H  SA  + D   +   R  F  LR++V
Sbjct:   34 VPKDEDIFDTRFVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGMSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILTIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDTQRFQAIIGSLLSTTGYLFFLGGGLISYGAKARTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFETFRSVPINSDSTGALTVASNAMFSSRTKHIALRFF-LRELTKGHWITLHHRHSATMIPDSEDRKRSREEFVALRTQV 431          
BLAST of mRNA_H-paniculata_contig27765.7594.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 4.580e-56
Identity = 150/453 (33.11%), Postives = 217/453 (47.90%), Query Frame = 1
Query:    1 MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQ---IHE-----------SQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTG-------------------------QPYLRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSALLDTAATK--ESTTGTMFFLANG----------------------------------------LVHFS-----------------PRLQKITATSTAEAELIALAACAKQGTYLLNICRELGFQ-LDNFEVRSNNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 1062
            +P   KV+GTR+VFK KAD +FK RLVVQG  Q   I +           S R+  A+A  + W V+ +DV VAFL   + + V+ K APG +   P TG                            L  +GF PT SDPC+Y  GS DT ++L+L+V+DILI+G    L+ D++ +L ++F ITD+GEV LILGM+V R+ + GTL +SQ  YV S+LE  GM + NP                  LL  A +K  +S TG++ +LA                                          L+ F                  P  +K T     E+EL A++  AK+  YL ++   L F+ L    + S++ G L LAAN+ +S+R+KHIA+RF  L++ I+   + + HV +   LADI TKH +R  F  +  ++  FG
Sbjct:  420 VPKHEKVLGTRFVFKQKADERFKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPPA--------------DELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAHTTAAKHALRYIRGTPDLLIIFKRGRFRVAAFADSSFGAIPDNRKSTTGLQVESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSIIHQIKDFG 858          
BLAST of mRNA_H-paniculata_contig27765.7594.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.200e-47
Identity = 122/410 (29.76%), Postives = 195/410 (47.56%), Query Frame = 1
Query:    1 MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQIHESQ-RLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQ------------------------PYLRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSALLDTAATK--ESTTGTMFFLANGL--------------------VHF---SPRLQKITATSTAEA----ELIALAACAKQGTYLLNICRELGFQLDNFEVR--SNNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 1062
            +P   K   ++WVFK KA G FK RLV QGW+Q+         A      W++F +D+  AFL  ++ E+V  +Q PGFE      G                         P+L  +GF P  SD C+Y    +D  + L+L+VDD+L+ G    +++ ++N+L  +  +TD+GEV L+LGME+ R+R +GTL  SQ  Y  S+LERFGMS   PT TPG  ++ +    +  LL    T+  +   G + ++A  L                    +H       L+ +  T+        +LIA     K+  +  N+  ELGF  +  +V    +N   LH   N ++S+ +K IA+RF  +R+ +   ++ I ++ +   +ADI TKH  +     L   + +F 
Sbjct:  811 VPPGRKREKSKWVFKRKAGGSFKRRLVAQGWNQVPGLDCGSTYAPPCNSTWSLFQMDLSTAFLCADILENVLVEQPPGFEVNGKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQVFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIMGCLMYIAQVLRYDIMYATGQLARPMTKPSKIHMVAAKHTLRYVAGTTDLRTRTTEKLIASVLAMKEAVFCSNMVSELGFGKEFAQVPLYCDNTATLHALGNRSFSSSTKRIALRFLYIRELVSEGRMSIHYIPTDSNIADIGTKHLNKHRLKHLLDNISSFN 1220          
BLAST of mRNA_H-paniculata_contig27765.7594.1 vs. uniprot
Match: A0A2N9F319_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F319_FAGSY)

HSP 1 Score: 182 bits (463), Expect = 1.860e-47
Identity = 131/442 (29.64%), Postives = 204/442 (46.15%), Query Frame = 1
Query:    1 MPSDHKVIGTRWVFKVKADG-----KFKARLVVQGWSQIH--------------ESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFE------------------KTHPTTG----QPYLRSMGFTPTISDPCIYSKGSND-TYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTP-------------------------------------------------GVKTDPTTTGE-DSALLDTAATKESTTGTMFFLANGLVHFSPRLQKITATSTAEAELIALAACAKQGTYLLNICRELGFQLDNFEVRSNNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 1050
            +P   K IG +WV+K+K DG     +++ARLVV+G++Q                 + R++LA+    D  +  LDV+ AFL+GEL+E +Y  Q  GFE                  K  P         ++ S+G+    SDPC+Y K   D  +I+L L+VDD+L+ GP    + D++ QL  +F + DLG  + ILGM++ R+R    + LSQ  Y+  +L RF M    P  TP                                                 G  +D T  G  DS         +ST+G +F LA G V +  +LQ I ATST EAE +A    +K+  +L  +  ELG + +   +  +++ ALHLA N  + +++KHI +++  +R+ +    + I  + + D LAD+LTK      F   RS +
Sbjct:  833 LPQGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGFAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFDLYLEQLDVKTAFLHGELEEEIYMLQPEGFEEKGKENLVCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRFGDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPTPLPINFKLSSSMSPSNEAERMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGSGSDFTVRGYVDSDYAGDLDKSKSTSGYVFTLAGGAVSWVSKLQSIVATSTTEAEYVAATQASKEAIWLQMLLEELGHKQEKIALFCDSQSALHLAKNPAFHSKTKHIRVQYHFVREKVEEGSVDIQKIHTKDNLADMLTKPINNDKFIWCRSSL 1274          
BLAST of mRNA_H-paniculata_contig27765.7594.1 vs. uniprot
Match: A0A8J5YXK5_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YXK5_9ROSI)

HSP 1 Score: 181 bits (460), Expect = 4.310e-47
Identity = 140/440 (31.82%), Postives = 211/440 (47.95%), Query Frame = 1
Query:    4 PSDHKVIGTRWVFKVK--ADGKF---KARLVVQGWSQIH--------------ESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFE------------------KTHPTTGQP----YLRSMGFTPTISDPCIY-SKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTP---GVKTDPTTTGED----------SALLDTAATK-----------------------------------ESTTGTMFFLANGLVHFSPRLQKITATSTAEAELIALAACAKQGTYLLNICRELGF-QLDNFEVRSNNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 1050
            P + KVIG +WVF+ K  +DG     KARLVV+G+SQ                ++ R L ALA  K W V  LDV+ AFLNG L+E ++ +Q  GFE                  K  P         YL  +GFT +IS+P +Y  K   +T +++SL+VDD+L+TG  D+L+ D + Q+ + F +TDLG ++  LGMEV  N+ E  + +SQ  + L VL +F MS   P  TP   G K   T+  +             LL   AT+                                   +ST+G  F L + +  +S + Q+  A STAEAE IA A    Q  +L  +  +L   Q++  E+  +N+ A+ +A N  +  ++KH  I++  +R+   + ++ + H  S DQLAD+LTK      F  LR ++
Sbjct:  731 PENRKVIGVKWVFRTKTNSDGSLNEHKARLVVKGYSQQQGVDFFETFAPVARLDTIRFLFALAAQKQWKVHQLDVKSAFLNGFLKEEIFIEQPEGFEVSGEKHKVYRLKKALYGLKQAPRAWYDRIDVYLSRLGFTKSISEPTLYVKKDEKETLLIVSLYVDDLLVTGSKDELIEDFKKQMQDIFEMTDLGLMTYFLGMEV--NQGEQGIFISQQAFALKVLSKFSMSKCKPASTPVALGEKLSSTSEHDRVDERGYRSLVGCLLYLTATRPDILYTVGLLKFGRSKKLKLVGYSDSDWAGSVDDMKSTSGYFFSLGSSVFSWSSKKQQTVAQSTAEAEYIAAATAVNQAIWLRKLLDDLNARQMEATEINVDNQSAIAIAKNPVFHGKTKHFKIKYHFVREPELAKEICLVHCCSRDQLADVLTKPLAAGRFECLREEI 1168          
BLAST of mRNA_H-paniculata_contig27765.7594.1 vs. uniprot
Match: A0A6H5K066_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K066_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.090e-46
Identity = 117/370 (31.62%), Postives = 187/370 (50.54%), Query Frame = 1
Query:    1 MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQIHE--------------SQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYL----RSM---------------------GFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSALLDTAATKESTTGTMFFLANGLVHFSPRLQKITATSTAEAELIALAACAKQGTYLLNICRELGFQ-LDNFEVRSNNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQL 990
            +P   K++GT++VFK K DG+FKARLVV G  Q                 S R+  A+    +W ++ LDV  AFLN      VY + APG    +  TG+P +    RS+                     G+  T SDPC+Y   S +  ++L+++VDDILI G   +L+   + +L ++F +TD+GEV  +LG++V RN ++GTL + +     S  +R G+          +K +  T  +D   L               LA GL+ +  + Q +TA ST EAE+ AL   A++  Y+ N+  EL F+   +  + S++ GAL +A N+ +S R+KH+A+R+  +R+ +   Q+ + H  S  QL
Sbjct:   18 VPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILIIGGDQQLVDQKKKELTDRFEMTDMGEVKRVLGIDVQRNYEQGTLAIHR-----STTQRGGLH---------LKFNDGTQLQDLRXL---------------LAGGLISYGAKAQALTAQSTVEAEIQALGYSAREAVYISNLMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQL 358          
BLAST of mRNA_H-paniculata_contig27765.7594.1 vs. uniprot
Match: A0A2N9IBB7_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IBB7_FAGSY)

HSP 1 Score: 178 bits (451), Expect = 6.170e-46
Identity = 129/450 (28.67%), Postives = 202/450 (44.89%), Query Frame = 1
Query:    1 MPSDHKVIGTRWVFKVKADG-----KFKARLVVQGWSQIH--------------ESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFE------------------KTHPTTG----QPYLRSMGFTPTISDPCIYSKGSND-TYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTP-------GVKTDPTTTGE---------------------------------------------------DSALLDTAATKESTTGTMFFLANGLVHFSPRLQKITATSTAEAELIALAACAKQGTYLLNICRELGFQLDNFEVRSNNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 1050
            +P   K IG +WV+K+K DG     +++ARLVV+G++Q                 + R++LA+    D  +  LDV+ AFL+GEL+E +Y  Q  GFE                  K  P         ++ S+G+    SDPC+Y K   D  +I+L L+VDD+L+ GP    + D++ QL  +F + DLG  + ILGM++ R+R    + LSQ  Y+  +L RF M    P  TP            P+   E                                                   DS         +ST+G +F LA G V +  +LQ I ATST EAE +A    +K+  +L  +  ELG + +   +  +++ ALHLA N  + +++KHI +++  +R+ +    + I  + + D LAD+LTK      F   RS +
Sbjct:  678 LPQGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGFAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFDLYLEQLDVKTAFLHGELEEEIYMLQPEGFEEKGKENLVCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRFGDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPTPLPINFKLSSSMSPSNEAERMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMVNPGSDFTVRGYVDSDYAGDLDKSKSTSGYVFTLAGGAVSWVSKLQSIVATSTTEAEYVAATQASKEAIWLQMLLEELGHKQEKIALFCDSQSALHLAKNPAFHSKTKHIRVQYHFVREKVEEGSVDIQKIHTKDNLADMLTKPINNDKFIWCRSSL 1127          
BLAST of mRNA_H-paniculata_contig27765.7594.1 vs. uniprot
Match: A0A8J5YXF9_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YXF9_9ROSI)

HSP 1 Score: 172 bits (435), Expect = 9.010e-46
Identity = 133/439 (30.30%), Postives = 212/439 (48.29%), Query Frame = 1
Query:   10 DHKVIGTRWVFKVK--ADG---KFKARLVVQGWSQIH--------------ESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFE------------------KTHPTTG----QPYLRSMGFTPTISDPCIYSKGSND-TYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSALLDTAATK--------------------------------------------ESTTGTMFFLANGLVHFSPRLQKITATSTAEAELIALAACAKQGTYLLNICRELGF-QLDNFEVRSNNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFGK 1065
            + KVIG RWVF+ K  ADG   K KARLVV+G+ Q +              ++ +LL +LA  K W +  LDV+ AFLNG L+E +Y +Q  GF+                  K  P         YL  +GF  ++S+P +Y K S D T +++S++VDD+L+ G  D L+ + + Q+   F +TDLG ++   GMEV  N+ +  + +SQ+ +VL +L++F M +  P  T   + +  ++  D   ++    +                                            +ST G  F L + +  +S + Q+I A STAEAE IA AA   Q  +L  +  +L   Q D  E+  +++ A+ +A N  +  ++KH  I+F  +R+  +S ++ + H  S DQLADILTK      F  LR K++  G+
Sbjct:   17 EKKVIGVRWVFRAKFNADGSLNKHKARLVVKGYCQQYGVDFEETFAPVARLDTIKLLFSLAAQKKWQIHQLDVKSAFLNGFLKEEIYIEQPDGFQVQGQEDKVYRLKKALYGLKQAPRAWYNRVDAYLFKLGFEKSLSEPTLYVKKSKDGTLLIVSIYVDDLLVNGSKDVLVNEFKAQMQEVFDMTDLGIMTYFFGMEV--NQTDRGIFISQHAFVLKILDKFSMQNCKPVNTSMAQGEKLSSIGDHVRVNEKEYRSLGCQEGARYIKGTLRLGMLFKKEKELKLVGYSDSNWAGCIDDMKSTLGYFFTLGSSVFCWSSKKQQIVAQSTAEAEYIAAAAAVNQAIWLRKLLHDLNENQCDPTEIMVDDQSAVAIAKNPVFHGKTKHFKIKFHFVREAEQSKEVSLVHCCSQDQLADILTKPLGTARFETLR-KLIGLGR 452          
BLAST of mRNA_H-paniculata_contig27765.7594.1 vs. uniprot
Match: A0A8J6CM81_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CM81_9ROSI)

HSP 1 Score: 169 bits (428), Expect = 5.970e-45
Identity = 127/397 (31.99%), Postives = 203/397 (51.13%), Query Frame = 1
Query:   10 DHKVIGTRWVFKVK--ADG---KFKARLVVQGWSQIH--------------ESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFE------------------KTHPTTG----QPYLRSMGFTPTISDPCIYSKGSND-TYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGED-------------SALLDTAATKESTTGTMFFLAN-----GLVHF---SPRLQKITATSTAEAELIALAACAKQGTYLLNICRELGF-QLDNFEVRSNNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTK 1008
            + KVIG RWVF+ K  ADG   K KA+LVV+G+SQ +              ++ +LL ALA  K W +  LDV+ AFLNG L+E +Y +Q  GF+                  K  P         YL ++GF  ++S+P +Y K S D T +++S++VDD+L+ G  D L+ + + Q+   F +TDLG ++  LGMEV  N+ +  + +SQ+ + L +L++F M +  P  T   + +  ++  D               LL   AT+      +  LA       ++HF      L+ I  T   E E IA AA   Q  +L  +  +L   QL+  E++ +N+ A+ +A N  +  ++KH  I+F  +R+  ++ ++ + H +S DQLADILTK
Sbjct:   17 EKKVIGVRWVFRAKFNADGSLNKHKAKLVVKGYSQQYGVDFDETLAPVARLDTIKLLFALAAQKKWQIHQLDVKSAFLNGFLKEEIYIEQPDGFQVQGQEDKVYRLKKALYELKQAPRAWYDRVDAYLSNLGFEKSLSEPTLYVKKSKDETLLIVSIYVDDLLVAGSKDVLVNEFKAQMQEVFDMTDLGVMTYFLGMEV--NQTDHGIFISQHAFSLKILDKFSMQNCKPVSTLMAQGEKLSSIGDHVRVDEKEYRSLVGCLLYLTATRPDLMHAVSMLARFMHCCNVLHFRAAKKMLRYIKGTLRLEVEYIAAAAAVNQAIWLRKLLYDLNEEQLEPTEIKVDNQSAVAIAKNPVFHGKTKHFKIKFHFVREAEQTGEVSLVHCSSQDQLADILTK 411          
BLAST of mRNA_H-paniculata_contig27765.7594.1 vs. uniprot
Match: A0A2N9H171_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H171_FAGSY)

HSP 1 Score: 174 bits (440), Expect = 2.100e-44
Identity = 131/452 (28.98%), Postives = 203/452 (44.91%), Query Frame = 1
Query:    1 MPSDHKVIGTRWVFKVKADG-----KFKARLVVQGWSQIH--------------ESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFE------------------KTHPTTG----QPYLRSMGFTPTISDPCIYSKGSND-TYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTP-------------------------------------------------GVKT----------DPTTTGE-DSALLDTAATKESTTGTMFFLANGLVHFSPRLQKITATSTAEAELIALAACAKQGTYLLNICRELGFQLDNFEVRSNNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 1050
            +P   K IG +WV+K+K DG     +++ARLVV+G++Q                 + R +LA+    D  +  LD++ AFL+GEL+E +Y  Q  GFE                  K  P         ++ S+G+    SDPC+Y K   D  +I+L L+VDD+L+ GP    + D++ QL  +F + DLG  + ILGM++ R+R    + LSQ  Y+  +L RF M    P  TP                                                 GV T          D T  G  DS         +ST+G +F LA G V +  +LQ I ATST EAE +A    +K+  +L  +  EL  + +   +  +++ ALHLA N  + +++KHI +++  +R+ +    + I  + + D LAD+LTK      F   RS +
Sbjct:  772 LPQGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGFAQKEGIDFNEIFSPVVRLTTVRAVLAMCATFDLYLEQLDMKTAFLHGELEEEIYMLQPEGFEEKGKENLVCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRFGDGNFIILLLYVDDMLVAGPNKDCITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPTPLPINLKISSSMSPSNEAERMEMSQVPYASAVGSLMFAMVCTRPDIAQAVGVGTSNAALCYGGSDFTVRGYVDSDYAGDLDKSKSTSGYVFTLAGGAVSWVSKLQSIVATSTTEAEYVAATQASKEAIWLQMLLEELEHKQEKIALFCDSQSALHLAKNPAFHSKTKHIRVQYHFVREKVEEGSVDIQKIHTKDNLADMLTKPINNDKFIWCRSSL 1223          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27765.7594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPV6_9PHAE9.930e-6335.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9R3_9PHAE4.580e-5633.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KL30_9PHAE1.200e-4729.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9F319_FAGSY1.860e-4729.64Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A8J5YXK5_9ROSI4.310e-4731.82Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
A0A6H5K066_9PHAE1.090e-4631.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9IBB7_FAGSY6.170e-4628.67Integrase catalytic domain-containing protein n=2 ... [more]
A0A8J5YXF9_9ROSI9.010e-4630.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J6CM81_9ROSI5.970e-4531.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9H171_FAGSY2.100e-4428.98Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27765contigH-paniculata_contig27765:355..1767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score179.5
Seed ortholog evalue2.8e-42
Seed eggNOG ortholog15368.BRADI5G22850.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons4
Model size1068
Cds size1068
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27765.7594.1prot_H-paniculata_contig27765.7594.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27765 355..1767 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.0042875-CDS-H-paniculata_contig27765:354..7691622929840.0042875-CDS-H-paniculata_contig27765:354..769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27765 355..769 -
1691481034.2247052-CDS-H-paniculata_contig27765:354..7691691481034.2247052-CDS-H-paniculata_contig27765:354..769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27765 355..769 -
1622929840.019648-CDS-H-paniculata_contig27765:997..13831622929840.019648-CDS-H-paniculata_contig27765:997..1383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27765 998..1383 -
1691481034.234143-CDS-H-paniculata_contig27765:997..13831691481034.234143-CDS-H-paniculata_contig27765:997..1383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27765 998..1383 -
1622929840.0331242-CDS-H-paniculata_contig27765:1458..16191622929840.0331242-CDS-H-paniculata_contig27765:1458..1619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27765 1459..1619 -
1691481034.24204-CDS-H-paniculata_contig27765:1458..16191691481034.24204-CDS-H-paniculata_contig27765:1458..1619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27765 1459..1619 -
1622929840.0474887-CDS-H-paniculata_contig27765:1661..17671622929840.0474887-CDS-H-paniculata_contig27765:1661..1767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27765 1662..1767 -
1691481034.2500856-CDS-H-paniculata_contig27765:1661..17671691481034.2500856-CDS-H-paniculata_contig27765:1661..1767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27765 1662..1767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27765.7594.1

>prot_H-paniculata_contig27765.7594.1 ID=prot_H-paniculata_contig27765.7594.1|Name=mRNA_H-paniculata_contig27765.7594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=356bp
MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQIHESQRLLLALATAKDW
AVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYLRSMGFTPTIS
DPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLG
EVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTD
PTTTGEDSALLDTAATKESTTGTMFFLANGLVHFSPRLQKITATSTAEAE
LIALAACAKQGTYLLNICRELGFQLDNFEVRSNNRGALHLAANSNYSNRS
KHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV
LTFGK*
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mRNA from alignment at H-paniculata_contig27765:355..1767-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27765.7594.1 ID=mRNA_H-paniculata_contig27765.7594.1|Name=mRNA_H-paniculata_contig27765.7594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1413bp|location=Sequence derived from alignment at H-paniculata_contig27765:355..1767- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCATCCGACCACAAAGTAATTGGCACACGCTGGGTATTTAAAGTAAA AGCGGACGGCAAATTCAAGGCTCGACTTGTTGTGCAAGGTTGGTCGCAAA TACACGGTATTGACTGCGGAAGCACGTTCGCACCTGTATGCAGACTAGAG AGTCAGCGGCTACTACTGGCGCTTGCAACCGCAAAGGATTGGGCCGTATT CGCACTAGATGTTCAAGTGGCATTTTTAAACGGCGAGCTTCAGGAGAGCG TCTATTGCAAGCAAGCACCCGGTTTCGAGAAGACTCACCCTACTACCGGA CAGCCCTATGTGATGAGCTTGAAGAAATCAATCTACGGACTGCGCCAAAG CCCTAATGTGTGGAATCATACAATCGACAACGAGTTGAGGAGCATGGGTT TTACACCAACTATCTCGGACCCCTGTATCTACAGCAAAGGGAGCAACGAC ACCTACATCATGCTCAGCTTGTTCGTCGACGATATCCTTATAACAGGACC AACGGACAAACTGCTGATGGACGTCCGTAACCAACTGATGAACAAATTCA CTATCACGGACCTGGGAGAAGTGTCGCTGATACTAGGCATGGAAGTACTA CGTAACAGACAAGAGGGTACTCTACAGCTGTCACAGTATAAGTACGTACT ATCTGTTTTAGAGAGGTTTGGCATGTCATCAGCCAACCCTACTAAAACAC CAGGCGTGAAAACGGACCCTACTACTACTGGCGAGGACAGCGCTCTACTG GATACAGCAGCTACAAAAGAGTACCAGGCCATGGTCGGGAGCCTTATCTT CTTGACTCAGTGTACGAGATTCGATATATGCTTCAGCGTTACTCAAGCAG CACGATTCATGAGTGCACCAACTCAACAGCACCTAGTGGCAGTGAAGCGC ATTCTTCGATACTTAAAAGGATACCCCGACATGCCGATAATCTACAACAG AGGGCAACCAGCGCTTACGGGCTTTTGCGACTCATCATACACTACAAGAT CAACAACTGGTACAATGTTCTTCCTGGCAAACGGACTTGTACACTTCTCA CCCCGACTACAGAAGATCACTGCTACAAGCACTGCTGAGGCGGAGCTCAT CGCACTAGCTGCATGCGCTAAACAAGGGACTTACCTTCTGAACATTTGCC GAGAGCTCGGTTTTCAGCTGGACAACTTTGAAGTGCGTTCGAACAACAGG GGCGCGCTCCACTTAGCAGCTAATAGCAATTACTCCAACCGCAGTAAACA CATCGCCATCAGGTTCGCAGCACTAAGGGACTGGATCAGGAGCAATCAGC TTGTCATCGACCATGTAGCAAGCGCTGATCAGCTAGCTGACATCCTCACC AAGCATTGCGAGAGAGTAGTGTTCACCCAGCTGCGGAGCAAAGTCTTGAC CTTTGGAAAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27765:355..1767-

>mRNA_H-paniculata_contig27765.7594.1 ID=mRNA_H-paniculata_contig27765.7594.1|Name=mRNA_H-paniculata_contig27765.7594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2136bp|location=Sequence derived from alignment at H-paniculata_contig27765:355..1767- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCATCCGACCACAAAGTAATTGGCACACGCTGGGTATTTAAAGTAAA
AGCGGACGGCAAATTCAAGGCTCGACTTGTTGTGCAAGGTTGGTCGCAAA
TACACGATGCCATCCGACCACAAAGTAATTGGCACACGCTGGGTATTTAA
AGTAAAAGCGGACGGCAAATTCAAGGCTCGACTTGTTGTGCAAGGTTGGT
CGCAAATACACGAGAGTCAGCGGCTACTACTGGCGCTTGCAACCGCAAAG
GATTGGGCCGTATTCGCACTAGATGTTCAAGTGGCATTTTTAAACGGCGA
GCTTCAGGAGAGCGTCTATTGCAAGCAAGCACCCGGTTTCGAGAAGACTC
ACCCTACTACCGGACAGCCCTATAGAGTCAGCGGCTACTACTGGCGCTTG
CAACCGCAAAGGATTGGGCCGTATTCGCACTAGATGTTCAAGTGGCATTT
TTAAACGGCGAGCTTCAGGAGAGCGTCTATTGCAAGCAAGCACCCGGTTT
CGAGAAGACTCACCCTACTACCGGACAGCCCTATTTGAGGAGCATGGGTT
TTACACCAACTATCTCGGACCCCTGTATCTACAGCAAAGGGAGCAACGAC
ACCTACATCATGCTCAGCTTGTTCGTCGACGATATCCTTATAACAGGACC
AACGGACAAACTGCTGATGGACGTCCGTAACCAACTGATGAACAAATTCA
CTATCACGGACCTGGGAGAAGTGTCGCTGATACTAGGCATGGAAGTACTA
CGTAACAGACAAGAGGGTACTCTACAGCTGTCACAGTATAAGTACGTACT
ATCTGTTTTAGAGAGGTTTGGCATGTCATCAGCCAACCCTACTAAAACAC
CAGGCGTGAAAACGGACCCTACTACTACTGGCGAGGACAGCGCTCTACTG
GATACAGCAGCTACAAAAGATTGAGGAGCATGGGTTTTACACCAACTATC
TCGGACCCCTGTATCTACAGCAAAGGGAGCAACGACACCTACATCATGCT
CAGCTTGTTCGTCGACGATATCCTTATAACAGGACCAACGGACAAACTGC
TGATGGACGTCCGTAACCAACTGATGAACAAATTCACTATCACGGACCTG
GGAGAAGTGTCGCTGATACTAGGCATGGAAGTACTACGTAACAGACAAGA
GGGTACTCTACAGCTGTCACAGTATAAGTACGTACTATCTGTTTTAGAGA
GGTTTGGCATGTCATCAGCCAACCCTACTAAAACACCAGGCGTGAAAACG
GACCCTACTACTACTGGCGAGGACAGCGCTCTACTGGATACAGCAGCTAC
AAAAGAATCAACAACTGGTACAATGTTCTTCCTGGCAAACGGACTTGTAC
ACTTCTCACCCCGACTACAGAAGATCACTGCTACAAGCACTGCTGAGGCG
GAGCTCATCGCACTAGCTGCATGCGCTAAACAAGGGACTTACCTTCTGAA
CATTTGCCGAGAGCTCGGTTTTCAGCTGGACAACTTTGAAGTGCGTTCGA
ACAACAGGGGCGCGCTCCACTTAGCAGCTAATAGCAATTACTCCAACCGC
AGTAAACACATCGCCATCAGGTTCGCAGCACTAAGGGACTGGATCAGGAG
CAATCAGCTTGTCATCGACCATGTAGCAAGCGCTGATCAGCTAGCTGACA
TCCTCACCAAGCATTGCGAGAGAGTAGTGTTCACCCAGCTGCGGAGCAAA
GTCTTGACCTTTGGAAAATGAATCAACAACTGGTACAATGTTCTTCCTGG
CAAACGGACTTGTACACTTCTCACCCCGACTACAGAAGATCACTGCTACA
AGCACTGCTGAGGCGGAGCTCATCGCACTAGCTGCATGCGCTAAACAAGG
GACTTACCTTCTGAACATTTGCCGAGAGCTCGGTTTTCAGCTGGACAACT
TTGAAGTGCGTTCGAACAACAGGGGCGCGCTCCACTTAGCAGCTAATAGC
AATTACTCCAACCGCAGTAAACACATCGCCATCAGGTTCGCAGCACTAAG
GGACTGGATCAGGAGCAATCAGCTTGTCATCGACCATGTAGCAAGCGCTG
ATCAGCTAGCTGACATCCTCACCAAGCATTGCGAGAGAGTAGTGTTCACC
CAGCTGCGGAGCAAAGTCTTGACCTTTGGAAAATGA
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