mRNA_H-paniculata_contig27685.7583.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27685.7583.1
Unique NamemRNA_H-paniculata_contig27685.7583.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27685.7583.1 vs. uniprot
Match: A0A6H5LBI9_9PHAE (PLCXc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBI9_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.220e-40
Identity = 71/114 (62.28%), Postives = 87/114 (76.32%), Query Frame = 1 
Query:    1 RIHTAWY-VKARDPLFWPGVKQEWVGAETVPALYKMAEDVLVQKKAVLWSLPLVLPAGVPRPVPHIPAQLDNWTMVGSVWQENASIVAADFIEETQIVRNCVGANLLTAARTSA 339
            R+   W  V+AR+P FWPGV+Q W GAE+V +L+ +AE  L +K  +LWSLPLVLPAGVPRPVPHIP  LD+W   G VWQ++ASIV  DF+EETQ+VRNCVGA L+  AR SA
Sbjct:  401 RVGILWNAVEAREPHFWPGVRQAWTGAESVRSLHDLAEAELAEKNGLLWSLPLVLPAGVPRPVPHIPEHLDDWLSAGGVWQDHASIVTCDFVEETQLVRNCVGACLMKMARASA 514
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27685.7583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBI9_9PHAE1.220e-4062.28PLCXc domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27685contigH-paniculata_contig27685:1657..2795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue3.5e-34
Seed eggNOG ortholog2880.D8LR29
KEGG rclassRC00017,RC00425
KEGG koko:K01771,ko:K06038
KEGG ReactionR03332
KEGG Pathwayko00562,map00562
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.phosphoric diester hydrolase activity
EggNOG OGsKOG4306@1,KOG4306@2759
EC4.6.1.13,4.6.1.14
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929838.248424-CDS-H-paniculata_contig27685:1656..19021622929838.248424-CDS-H-paniculata_contig27685:1656..1902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27685 1657..1902 +
1691481033.3335917-CDS-H-paniculata_contig27685:1656..19021691481033.3335917-CDS-H-paniculata_contig27685:1656..1902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27685 1657..1902 +
1622929838.2648106-CDS-H-paniculata_contig27685:2693..27951622929838.2648106-CDS-H-paniculata_contig27685:2693..2795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27685 2694..2795 +
1691481033.347649-CDS-H-paniculata_contig27685:2693..27951691481033.347649-CDS-H-paniculata_contig27685:2693..2795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27685 2694..2795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27685.7583.1prot_H-paniculata_contig27685.7583.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27685 1657..2795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27685.7583.1

>prot_H-paniculata_contig27685.7583.1 ID=prot_H-paniculata_contig27685.7583.1|Name=mRNA_H-paniculata_contig27685.7583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
RIHTAWYVKARDPLFWPGVKQEWVGAETVPALYKMAEDVLVQKKAVLWSL
PLVLPAGVPRPVPHIPAQLDNWTMVGSVWQENASIVAADFIEETQIVRNC
VGANLLTAARTSAAL*
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mRNA from alignment at H-paniculata_contig27685:1657..2795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27685.7583.1 ID=mRNA_H-paniculata_contig27685.7583.1|Name=mRNA_H-paniculata_contig27685.7583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1139bp|location=Sequence derived from alignment at H-paniculata_contig27685:1657..2795+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCATCCACACTGCGTGGTATGTCAAGGCAAGGGACCCTCTGTTTTGGCC
GGGCGTGAAGCAGGAGTGGGTCGGCGCAGAGACTGTGCCTGCCCTCTACA
AAATGGCGGAGGACGTGTTGGTCCAGAAGAAGGCTGTTCTATGGTCTTTG
CCCCTCGTGCTGCCGGCAGGGGTGCCTCGTCCGGTGCCTCACATTCCTGC
GCAGCTGGACAACTGGACTATGGTCGGGAGCGTGTGGCAAGAGAACGTGA
GTCTTTTTTTAGTGTGGTCGTGTTGGTGGTGTTGGTGGTGGTGGTGGTGG
TGGTGGTGGTGGAATGTTTCAAGCAGGTGGTACATCGATAGGTACAGTCG
TCCTCGCTTGAAAGGTATTTTGTGTGCACGCGGGGAAAAACGTCTTTTTT
TAACACGGGGAAGTGCCCCTAAGTGAACGAGGATGATCACTCATCCCCGG
CTTAAGTGTGGGTTTTCTATGGCGCAATCAATGTGCCTTGACTAAAGTGA
GGAGGAAAAAATAATCATGTTTGCCGCCCTATTTATGCTCGGTGTTCACT
TGTACTGTCGAATATATGGTACAGCCAGTGTTTTACGAGTAACGAGGGTG
GCACTGCATTTGTGTAGAAGGGCACATCGGGACGGGGCATTGTTGCACAT
GATAACGCGGCAGTAAACACGAAATACAAGAGGAATAAATGCTGTCGTTG
TGATCGCTGAAGATTTCTGAACCCAATAGTAAATTTAGGGCTGTGTTGCA
AAGGATCAGCCAGGGGAGGACCAATTTCGGGCACGACATGGTACATGCAA
TGTGCGCTTGAGGAGCAATAAACAAAATATCAACTCGGACCCTTAGTGCC
AACAACAGACTAGTAATCTCTCACACGGTAGAGGGCCAAACGGTGACGTG
AAAAATATTATAACAGGGCCAACCTTTTCTGTGAACTACGAAGTGCTGTA
ACACCTTGTTGTGTTGTGTTGTGTTGTGTTGTGTTGTGTTATGTTCTGTT
CTGTCGGACGTATGATATTATGGTACTAACATTGCAGGCTAGCATCGTCG
CGGCGGACTTCATTGAAGAGACACAGATCGTTCGTAACTGCGTCGGGGCC
AACCTACTCACGGCCGCGCGTACCAGCGCAGCCCTCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27685:1657..2795+

>mRNA_H-paniculata_contig27685.7583.1 ID=mRNA_H-paniculata_contig27685.7583.1|Name=mRNA_H-paniculata_contig27685.7583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig27685:1657..2795+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCATCCACACTGCGTGGTATGTCAAGGCAAGGGACCCTCTGTTTTGGCC
GGGCGTGAAGCAGGAGTGGGTCGGCGCAGAGACTGTGCCTGCCCTCTACA
AAATGGCGGAGGACGTGTTGGTCCAGAAGAAGGCTGTTCTATGGTCTTTG
CCCCTCGTGCTGCCGGCAGGGGTGCCTCGTCCGGTGCCTCACATTCCTGC
GCAGCTGGACAACTGGACTATGGTCGGGAGCGTGTGGCAAGAGAACCGCA
TCCACACTGCGTGGTATGTCAAGGCAAGGGACCCTCTGTTTTGGCCGGGC
GTGAAGCAGGAGTGGGTCGGCGCAGAGACTGTGCCTGCCCTCTACAAAAT
GGCGGAGGACGTGTTGGTCCAGAAGAAGGCTGTTCTATGGTCTTTGCCCC
TCGTGCTGCCGGCAGGGGTGCCTCGTCCGGTGCCTCACATTCCTGCGCAG
CTGGACAACTGGACTATGGTCGGGAGCGTGTGGCAAGAGAACGCTAGCAT
CGTCGCGGCGGACTTCATTGAAGAGACACAGATCGTTCGTAACTGCGTCG
GGGCCAACCTACTCACGGCCGCGCGTACCAGCGCAGCCCTCTGAGCTAGC
ATCGTCGCGGCGGACTTCATTGAAGAGACACAGATCGTTCGTAACTGCGT
CGGGGCCAACCTACTCACGGCCGCGCGTACCAGCGCAGCCCTCTGA
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