mRNA_H-paniculata_contig2758.7546.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2758.7546.1
Unique NamemRNA_H-paniculata_contig2758.7546.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: A0A151SR20_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SR20_CAJCA)

HSP 1 Score: 129 bits (324), Expect = 6.770e-34
Identity = 65/142 (45.77%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 NSTAYRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLLGSIGF 426
            +ST ++ IVGSLMY +T TRPDI YA+   +R ME P        KR+FRYL    DLG+ +    NG  L GF D N+  D++DR+ST+GHVF +   AISW S+KQQ+VT S+TEAE++AA  +  + +++  +L  + F
Sbjct:   79 DSTYFKRIVGSLMYLTT-TRPDIMYAVCLISRYMERPTELHLKAAKRVFRYLKGTTDLGVFYKK-INGSILTGFTDSNYAGDMDDRRSTSGHVFMIGSGAISWASKKQQVVTLSTTEAEFIAAATSACQAIWLRRILEELHF 218          
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 129 bits (324), Expect = 7.220e-34
Identity = 59/141 (41.84%), Postives = 92/141 (65.25%), Query Frame = 1
Query:    1 NSTAYRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLLGSIG 423
            N+  Y+ ++G L Y +TATRPD+A A+   ++ M  P +E ++  KR+ RY+    + G+ F G S    L G++D +W  D++ R+ST+G+VF++NG  +SW S++Q  VTRS+TEAEYVA   A +E V++  LL  IG
Sbjct:   82 NTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIG 222          
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: UPI001C093D0F (LOW QUALITY PROTEIN: secreted RxLR effector protein 161-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C093D0F)

HSP 1 Score: 126 bits (317), Expect = 1.950e-33
Identity = 57/136 (41.91%), Postives = 88/136 (64.71%), Query Frame = 1
Query:   13 YRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLLGSI 420
            Y+  VGSL+Y ST TRPDIA+A+   A    DP ++ +   KRI RYL+    LG+ +   +   C+ G++D +W  D++DRKS +G++FK++G A+SW+S+KQ  V  S+ EAEY+A   A +E V++  LL  +
Sbjct:   27 YQSAVGSLLYLSTRTRPDIAFAVSNVASFCSDPTKQHWTAVKRILRYLNGTQPLGLLYSKNTEKECI-GYSDADWAGDLDDRKSVSGYMFKMSGAAVSWKSKKQSXVLLSTAEAEYMALASAAQEAVWMRQLLSDL 161          
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: UPI001E2788DD (secreted RxLR effector protein 161-like n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E2788DD)

HSP 1 Score: 122 bits (306), Expect = 7.650e-33
Identity = 59/129 (45.74%), Postives = 87/129 (67.44%), Query Frame = 1
Query:   13 YRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYI 399
            YR  VGSLM+A+  +RPDIAY++  A+R +  P +  +N  KRI RYL +  +LGI +    +   L GF+D ++  D + RKST G++FKL+   ++W S++QQ VT S+TEAEYVAA +A KE ++I
Sbjct:   27 YREAVGSLMFAAVVSRPDIAYSVGVASRYLNAPSKTHWNAVKRIIRYLKSTSELGIYYSR-EDKLQLSGFSDSDYASDEDTRKSTTGYIFKLSNGDVTWSSKRQQAVTLSTTEAEYVAACQATKEAIWI 154          
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: A0A075B126_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B126_ROZAC)

HSP 1 Score: 126 bits (317), Expect = 1.220e-32
Identity = 60/137 (43.80%), Postives = 89/137 (64.96%), Query Frame = 1
Query:   13 YRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SN-GHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLLGSI 420
            YR  +GSL+YAS  TRPDI YA++ A++ + +P +E +   KRI RYL    D G+ F G  N    ++G+ D +W  D++ R+S +G+ F LN D I+W+S +QQ V  S+TEAEY+A G A +E ++I +LL  I
Sbjct:   76 YRSAIGSLLYASCGTRPDITYAVNIASKYLSNPGKEHWLLAKRIMRYLIGTKDYGLVFQGSQNKSFIVQGYVDSDWGSDIDTRRSVSGYAFMLNHDLITWKSTRQQTVATSTTEAEYLALGLATQEAMWIKELLTEI 212          
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F)

HSP 1 Score: 126 bits (317), Expect = 1.240e-32
Identity = 64/141 (45.39%), Postives = 89/141 (63.12%), Query Frame = 1
Query:    1 NSTAYRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLLGSIG 423
            +ST Y+ I+GSLMY  T TRPDI YA+   +R ME P     N  KRI RY+    D G+ +    +G    G+ D ++  D++DRKST+GH+F LN  AISW S+KQQ+VT SSTEAEYVAA  +  + +++  +   +G
Sbjct:   96 DSTFYKQIIGSLMYL-TYTRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGVFYKR-EDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLG 234          
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 130 bits (328), Expect = 1.650e-32
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = 1
Query:    1 NSTAYRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLL 411
            N   Y+  VGSL+Y S+ATRPDI +A++  A+   +P  E +   KRIFRYL    + G+ +   +N  C+ GF+D +W  D+ DRKST+G+ F++NG A+SWRS+KQ  V  S+ EAEYVA   A +E +++  LL
Sbjct: 1048 NKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLL 1183          
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 127 bits (318), Expect = 2.360e-32
Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 NSTAYRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLL 411
            N   Y+  VGSL+Y S+ATRPDI +A++  A+   +   E +   KRIFRYL    + G+ +   +N  C+ GF+D +W  D+ DRKST+G+ F++NG A+SWRS+KQ  V  S+ EAEYVA   A +E +++  LL
Sbjct:  159 NKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLL 294          
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: A0A7D9J479_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J479_PARCT)

HSP 1 Score: 129 bits (323), Expect = 6.070e-32
Identity = 61/138 (44.20%), Postives = 88/138 (63.77%), Query Frame = 1
Query:   13 YRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLLGSIGF 426
            Y+  +G L YASTATRPDIA A+   +  M +P +E +   KR+ RY+    + G+ F    N H L G++D NW  DV+ R+ST+G+VFK+    ISW S+KQ  V +S+TEAEYVA  +A +E +++  LL  IG+
Sbjct:  527 YQQAIGCLTYASTATRPDIAAAVSILSTFMSNPSKEHWIGIKRVLRYIKGTLNYGLKFQANGNHHELVGYSDANWAGDVDTRRSTSGYVFKVANSTISWSSKKQATVAKSTTEAEYVALSQATQEAIWMRKLLSDIGY 664          
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 129 bits (323), Expect = 6.480e-32
Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   13 YRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLLGSI 420
            Y+  VG L+Y ST TRPDIAYA+   AR   DP  E +   KRI RYL+   D+G+ + G        G++D +W  D++DRKST+G+VF+++  AISWRS+KQ  V  S+ EAEY+A   A +E V++  LL  +
Sbjct:  276 YQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDL 411          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151SR20_CAJCA6.770e-3445.77Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9D5L2_PARCT7.220e-3441.84Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
UPI001C093D0F1.950e-3341.91LOW QUALITY PROTEIN: secreted RxLR effector protei... [more]
UPI001E2788DD7.650e-3345.74secreted RxLR effector protein 161-like n=1 Tax=Ha... [more]
A0A075B126_ROZAC1.220e-3243.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0009AB427F1.240e-3245.39uncharacterized protein LOC109950541 n=1 Tax=Prunu... [more]
A0A6S7HEL0_PARCT1.650e-3244.53Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9M6E1_PARCT2.360e-3243.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9J479_PARCT6.070e-3244.20Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9KES8_PARCT6.480e-3244.85Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2758contigH-paniculata_contig2758:14503..14928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size426
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2758.7546.1prot_H-paniculata_contig2758.7546.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2758 14734..14892 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929833.1602035-UTR-H-paniculata_contig2758:14502..147331622929833.1602035-UTR-H-paniculata_contig2758:14502..14733Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2758 14503..14733 -
1691481031.090231-UTR-H-paniculata_contig2758:14502..147331691481031.090231-UTR-H-paniculata_contig2758:14502..14733Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2758 14503..14733 -
1622929833.2033727-UTR-H-paniculata_contig2758:14892..149281622929833.2033727-UTR-H-paniculata_contig2758:14892..14928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2758 14893..14928 -
1691481031.1079743-UTR-H-paniculata_contig2758:14892..149281691481031.1079743-UTR-H-paniculata_contig2758:14892..14928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2758 14893..14928 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929833.185862-CDS-H-paniculata_contig2758:14733..148921622929833.185862-CDS-H-paniculata_contig2758:14733..14892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2758 14734..14892 -
1691481031.099015-CDS-H-paniculata_contig2758:14733..148921691481031.099015-CDS-H-paniculata_contig2758:14733..14892Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2758 14734..14892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2758.7546.1

>prot_H-paniculata_contig2758.7546.1 ID=prot_H-paniculata_contig2758.7546.1|Name=mRNA_H-paniculata_contig2758.7546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISF
GG*
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mRNA from alignment at H-paniculata_contig2758:14503..14928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2758.7546.1 ID=mRNA_H-paniculata_contig2758.7546.1|Name=mRNA_H-paniculata_contig2758.7546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at H-paniculata_contig2758:14503..14928- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATTCAACTGCATACAGAGGCATAGTAGGATCACTCATGTACGCCTCGAC AGCAACTAGACCTGATATAGCATATGCGATACACCAAGCAGCACGTCGTA TGGAGGATCCATGTCGGGAAGACTTCAATACATGCAAGCGCATTTTTCGT TATCTCAGTACTGTGCCTGACCTCGGCATTTCGTTCGGCGGTTAAAGTAA TGGTCACTGTCTGGAAGGATTCGCTGATCCCAACTGGGTGGAAGATGTCG AGGACCGAAAGTCCACAGCAGGACATGTTTTCAAGTTGAATGGTGATGCG ATAAGTTGGCGCTCTAGGAAGCAACAGTTAGTCACGCGGTCCAGTACAGA GGCAGAGTACGTTGCTGCAGGGGAAGCGGGAAAGGAGACGGTGTATATCA CAGATCTACTAGGATCGATAGGCTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig2758:14503..14928-

>mRNA_H-paniculata_contig2758.7546.1 ID=mRNA_H-paniculata_contig2758.7546.1|Name=mRNA_H-paniculata_contig2758.7546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig2758:14503..14928- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACGCCTCGACAGCAACTAGACCTGATATAGCATATGCGATACACCA
AGCAGCACGTCGTATGGAGGATCCATGTCGGGAAGACTTCAATACATGCA
AGCGCATTTTTCGTTATCTCAGTACTGTGCCTGACCTCGGCATTTCGTTC
GGCGGTTAAATGTACGCCTCGACAGCAACTAGACCTGATATAGCATATGC
GATACACCAAGCAGCACGTCGTATGGAGGATCCATGTCGGGAAGACTTCA
ATACATGCAAGCGCATTTTTCGTTATCTCAGTACTGTGCCTGACCTCGGC
ATTTCGTTCGGCGGTTAA
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