mRNA_H-paniculata_contig2758.7546.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: A0A151SR20_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SR20_CAJCA) HSP 1 Score: 129 bits (324), Expect = 6.770e-34 Identity = 65/142 (45.77%), Postives = 92/142 (64.79%), Query Frame = 1
Query: 1 NSTAYRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLLGSIGF 426
+ST ++ IVGSLMY +T TRPDI YA+ +R ME P KR+FRYL DLG+ + NG L GF D N+ D++DR+ST+GHVF + AISW S+KQQ+VT S+TEAE++AA + + +++ +L + F
Sbjct: 79 DSTYFKRIVGSLMYLTT-TRPDIMYAVCLISRYMERPTELHLKAAKRVFRYLKGTTDLGVFYKK-INGSILTGFTDSNYAGDMDDRRSTSGHVFMIGSGAISWASKKQQVVTLSTTEAEFIAAATSACQAIWLRRILEELHF 218
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT) HSP 1 Score: 129 bits (324), Expect = 7.220e-34 Identity = 59/141 (41.84%), Postives = 92/141 (65.25%), Query Frame = 1
Query: 1 NSTAYRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLLGSIG 423
N+ Y+ ++G L Y +TATRPD+A A+ ++ M P +E ++ KR+ RY+ + G+ F G S L G++D +W D++ R+ST+G+VF++NG +SW S++Q VTRS+TEAEYVA A +E V++ LL IG
Sbjct: 82 NTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIG 222
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: UPI001C093D0F (LOW QUALITY PROTEIN: secreted RxLR effector protein 161-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C093D0F) HSP 1 Score: 126 bits (317), Expect = 1.950e-33 Identity = 57/136 (41.91%), Postives = 88/136 (64.71%), Query Frame = 1
Query: 13 YRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLLGSI 420
Y+ VGSL+Y ST TRPDIA+A+ A DP ++ + KRI RYL+ LG+ + + C+ G++D +W D++DRKS +G++FK++G A+SW+S+KQ V S+ EAEY+A A +E V++ LL +
Sbjct: 27 YQSAVGSLLYLSTRTRPDIAFAVSNVASFCSDPTKQHWTAVKRILRYLNGTQPLGLLYSKNTEKECI-GYSDADWAGDLDDRKSVSGYMFKMSGAAVSWKSKKQSXVLLSTAEAEYMALASAAQEAVWMRQLLSDL 161
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: UPI001E2788DD (secreted RxLR effector protein 161-like n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E2788DD) HSP 1 Score: 122 bits (306), Expect = 7.650e-33 Identity = 59/129 (45.74%), Postives = 87/129 (67.44%), Query Frame = 1
Query: 13 YRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYI 399
YR VGSLM+A+ +RPDIAY++ A+R + P + +N KRI RYL + +LGI + + L GF+D ++ D + RKST G++FKL+ ++W S++QQ VT S+TEAEYVAA +A KE ++I
Sbjct: 27 YREAVGSLMFAAVVSRPDIAYSVGVASRYLNAPSKTHWNAVKRIIRYLKSTSELGIYYSR-EDKLQLSGFSDSDYASDEDTRKSTTGYIFKLSNGDVTWSSKRQQAVTLSTTEAEYVAACQATKEAIWI 154
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: A0A075B126_ROZAC (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B126_ROZAC) HSP 1 Score: 126 bits (317), Expect = 1.220e-32 Identity = 60/137 (43.80%), Postives = 89/137 (64.96%), Query Frame = 1
Query: 13 YRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SN-GHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLLGSI 420
YR +GSL+YAS TRPDI YA++ A++ + +P +E + KRI RYL D G+ F G N ++G+ D +W D++ R+S +G+ F LN D I+W+S +QQ V S+TEAEY+A G A +E ++I +LL I
Sbjct: 76 YRSAIGSLLYASCGTRPDITYAVNIASKYLSNPGKEHWLLAKRIMRYLIGTKDYGLVFQGSQNKSFIVQGYVDSDWGSDIDTRRSVSGYAFMLNHDLITWKSTRQQTVATSTTEAEYLALGLATQEAMWIKELLTEI 212
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F) HSP 1 Score: 126 bits (317), Expect = 1.240e-32 Identity = 64/141 (45.39%), Postives = 89/141 (63.12%), Query Frame = 1
Query: 1 NSTAYRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLLGSIG 423
+ST Y+ I+GSLMY T TRPDI YA+ +R ME P N KRI RY+ D G+ + +G G+ D ++ D++DRKST+GH+F LN AISW S+KQQ+VT SSTEAEYVAA + + +++ + +G
Sbjct: 96 DSTFYKQIIGSLMYL-TYTRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGVFYKR-EDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLG 234
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT) HSP 1 Score: 130 bits (328), Expect = 1.650e-32 Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = 1
Query: 1 NSTAYRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLL 411
N Y+ VGSL+Y S+ATRPDI +A++ A+ +P E + KRIFRYL + G+ + +N C+ GF+D +W D+ DRKST+G+ F++NG A+SWRS+KQ V S+ EAEYVA A +E +++ LL
Sbjct: 1048 NKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLL 1183
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT) HSP 1 Score: 127 bits (318), Expect = 2.360e-32 Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = 1
Query: 1 NSTAYRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLL 411
N Y+ VGSL+Y S+ATRPDI +A++ A+ + E + KRIFRYL + G+ + +N C+ GF+D +W D+ DRKST+G+ F++NG A+SWRS+KQ V S+ EAEYVA A +E +++ LL
Sbjct: 159 NKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLL 294
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: A0A7D9J479_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J479_PARCT) HSP 1 Score: 129 bits (323), Expect = 6.070e-32 Identity = 61/138 (44.20%), Postives = 88/138 (63.77%), Query Frame = 1
Query: 13 YRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLLGSIGF 426
Y+ +G L YASTATRPDIA A+ + M +P +E + KR+ RY+ + G+ F N H L G++D NW DV+ R+ST+G+VFK+ ISW S+KQ V +S+TEAEYVA +A +E +++ LL IG+
Sbjct: 527 YQQAIGCLTYASTATRPDIAAAVSILSTFMSNPSKEHWIGIKRVLRYIKGTLNYGLKFQANGNHHELVGYSDANWAGDVDTRRSTSGYVFKVANSTISWSSKKQATVAKSTTEAEYVALSQATQEAIWMRKLLSDIGY 664
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT) HSP 1 Score: 129 bits (323), Expect = 6.480e-32 Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = 1
Query: 13 YRGIVGSLMYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFGG*SNGHCLEGFADPNWVEDVEDRKSTAGHVFKLNGDAISWRSRKQQLVTRSSTEAEYVAAGEAGKETVYITDLLGSI 420
Y+ VG L+Y ST TRPDIAYA+ AR DP E + KRI RYL+ D+G+ + G G++D +W D++DRKST+G+VF+++ AISWRS+KQ V S+ EAEY+A A +E V++ LL +
Sbjct: 276 YQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDL 411 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2758.7546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2758.7546.1 >prot_H-paniculata_contig2758.7546.1 ID=prot_H-paniculata_contig2758.7546.1|Name=mRNA_H-paniculata_contig2758.7546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp MYASTATRPDIAYAIHQAARRMEDPCREDFNTCKRIFRYLSTVPDLGISFback to top mRNA from alignment at H-paniculata_contig2758:14503..14928- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2758.7546.1 ID=mRNA_H-paniculata_contig2758.7546.1|Name=mRNA_H-paniculata_contig2758.7546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at H-paniculata_contig2758:14503..14928- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2758:14503..14928- >mRNA_H-paniculata_contig2758.7546.1 ID=mRNA_H-paniculata_contig2758.7546.1|Name=mRNA_H-paniculata_contig2758.7546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig2758:14503..14928- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |