mRNA_H-paniculata_contig11172.754.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11172.754.1
Unique NamemRNA_H-paniculata_contig11172.754.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11172.754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11172contigH-paniculata_contig11172:6109..6714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.8863256-CDS-H-paniculata_contig11172:6108..62251622928822.8863256-CDS-H-paniculata_contig11172:6108..6225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11172 6109..6225 +
1691480633.925163-CDS-H-paniculata_contig11172:6108..62251691480633.925163-CDS-H-paniculata_contig11172:6108..6225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11172 6109..6225 +
1622928822.896632-CDS-H-paniculata_contig11172:6621..67141622928822.896632-CDS-H-paniculata_contig11172:6621..6714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11172 6622..6714 +
1691480633.9383192-CDS-H-paniculata_contig11172:6621..67141691480633.9383192-CDS-H-paniculata_contig11172:6621..6714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11172 6622..6714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11172.754.1prot_H-paniculata_contig11172.754.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11172 6109..6714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11172.754.1

>prot_H-paniculata_contig11172.754.1 ID=prot_H-paniculata_contig11172.754.1|Name=mRNA_H-paniculata_contig11172.754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MQGLIKEAIHCYVTAVRLMPKFAAVHSNLGSVLKEQGKLDHALAHYHEAI
AIDPTFADAYSNMGNAYKDL
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mRNA from alignment at H-paniculata_contig11172:6109..6714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11172.754.1 ID=mRNA_H-paniculata_contig11172.754.1|Name=mRNA_H-paniculata_contig11172.754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=606bp|location=Sequence derived from alignment at H-paniculata_contig11172:6109..6714+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGGTTGATAAAGGAGGCCATCCATTGCTACGTGACGGCCGTTCG
TCTCATGCCTAAGTTCGCCGCCGTGCACAGCAATCTGGGCAGCGTGCTGA
AAGAGCAGGGTAAACTGGTGCGAAAAAAATGGGGATGTAGAACACGAACG
AAAAGACTTGACTGTGTTGTTAGCGTCCACTTGTTACGATGAACGATAAC
AGAGGCTAGTAACAGTACTGTCCGTTATTTATTCGTGTTGTGTTCGTTGG
TTTTGTCCTGTCTTTTTCGGCACCACGATCTTTTTCACTTTTTTTTTTTT
TTTTCTGTTTTGGTAGCCTTGTGGGTTGAGTTTTGATCGCGCCACGGTAC
CGATTGATGTTAAAATTTGTTCATGATTAGAAATTTTGCCATCTCCCGAA
AGTCAGTCAGTCATTTTTTATTTTTTTTGGGTCATTTCTTCCGTGGTACG
CGAGCTGCAAGCAAAGCATAATATGACACACTATGAATCGATGGTCGCTT
TTTATTTTTGCAGGATCATGCGCTCGCCCATTACCATGAGGCCATCGCGA
TCGACCCTACGTTTGCCGATGCATACAGTAACATGGGTAACGCCTACAAG
GACCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig11172:6109..6714+

>mRNA_H-paniculata_contig11172.754.1 ID=mRNA_H-paniculata_contig11172.754.1|Name=mRNA_H-paniculata_contig11172.754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig11172:6109..6714+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGGTTGATAAAGGAGGCCATCCATTGCTACGTGACGGCCGTTCG
TCTCATGCCTAAGTTCGCCGCCGTGCACAGCAATCTGGGCAGCGTGCTGA
AAGAGCAGGGTAAACTGATGCAGGGGTTGATAAAGGAGGCCATCCATTGC
TACGTGACGGCCGTTCGTCTCATGCCTAAGTTCGCCGCCGTGCACAGCAA
TCTGGGCAGCGTGCTGAAAGAGCAGGGTAAACTGGATCATGCGCTCGCCC
ATTACCATGAGGCCATCGCGATCGACCCTACGTTTGCCGATGCATACAGT
AACATGGGTAACGCCTACAAGGACCTCGATCATGCGCTCGCCCATTACCA
TGAGGCCATCGCGATCGACCCTACGTTTGCCGATGCATACAGTAACATGG
GTAACGCCTACAAGGACCTC
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