mRNA_H-paniculata_contig11171.751.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE) HSP 1 Score: 110 bits (276), Expect = 6.740e-27 Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 1 Query: 1 MAERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186 MAERVSRSVRRLDDIQMRVQR LALVEDVINLRGCAEGVR AV AGDL EAATYVRRFREID Sbjct: 141 MAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFREID 202
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A4D9D1B9_9STRA (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1B9_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 8.980e-14 Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 1 Query: 1 MAERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186 +AE++S SVR LD+ QMRVQR LA+VED+INL+ CAEGV A++ DL +A +YVR+F I+ Sbjct: 156 LAEKMSSSVRELDERQMRVQRVLAMVEDIINLKTCAEGVARALEEDDLLDATSYVRQFHSIE 217
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A7S2WIB6_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIB6_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 3.120e-13 Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 1 Query: 1 MAERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186 ++ERVSR++RRLD QM VQ LALVED++NL+ CA+GV A+ DL +A YVR+F +ID Sbjct: 82 LSERVSRTIRRLDRAQMNVQHALALVEDIVNLKDCAQGVITALKEEDLRDATGYVRQFHDID 143
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: I2CQF7_NANGC (Oligomeric golgi complex component (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQF7_NANGC) HSP 1 Score: 67.4 bits (163), Expect = 3.500e-13 Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1 Query: 13 VSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186 +S SVR LD+ QMRVQR LA+VED+INL+ CAEGV A++ DL A +YVR+F I+ Sbjct: 1 MSSSVRELDERQMRVQRVLAMVEDIINLKTCAEGVARALEEDDLLGATSYVRQFHSIE 58
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A836CCD6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCD6_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 1.730e-9 Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1 Query: 4 AERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186 AERVS +VR LD + R L V++ + LRGCAEGVR A+ GDLG A +VRRF ++D Sbjct: 93 AERVSGAVRGLDARRARAAAALTRVDEAVELRGCAEGVRGAMARGDLGAAVHHVRRFHQLD 153
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A507DRY6_9FUNG (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DRY6_9FUNG) HSP 1 Score: 58.2 bits (139), Expect = 2.400e-8 Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 1 Query: 1 MAERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186 +AER+S VR+LD Q RV+ T+ LVED+ L+ CA+GV+ A+D+GD A +V RF D Sbjct: 85 LAERISGKVRQLDLEQSRVKATMGLVEDIQELKKCADGVQKALDSGDFELAGHFVSRFLNYD 146
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A0G4F532_VITBC (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F532_VITBC) HSP 1 Score: 56.6 bits (135), Expect = 8.390e-8 Identity = 25/60 (41.67%), Postives = 42/60 (70.00%), Query Frame = 1 Query: 4 AERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREI 183 +E++S VRRLD ++ R++ L LVED+++L+ CAEGV A+ GD AA ++ ++R + Sbjct: 89 SEKLSSRVRRLDTVRSRIEAALQLVEDLLDLKNCAEGVESAMGRGDYETAAKHIAKYRSL 148
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A077Z8M1_TRITR (Conserved oligomeric Golgi complex subunit 4 n=3 Tax=Trichuris TaxID=36086 RepID=A0A077Z8M1_TRITR) HSP 1 Score: 50.4 bits (119), Expect = 1.260e-5 Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1 Query: 1 MAERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186 +A+ +S VR +D + RV L VED+++LR C EGVR+A+ D +AA++V RF +D Sbjct: 76 IADGISSKVRDMDVAKTRVIECLQFVEDILDLRTCTEGVRIAMANEDYEQAASHVHRFLTLD 137
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A5S6Q4M1_TRIMR (Conserved oligomeric Golgi complex subunit 4 n=3 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q4M1_TRIMR) HSP 1 Score: 49.3 bits (116), Expect = 3.220e-5 Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1 Query: 1 MAERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186 +A+ +S VR +D + RV L VED+++LR C EGVR+A+ D +AA +V RF +D Sbjct: 76 VADGISSKVRDMDVAKTRVVECLQFVEDILDLRTCTEGVRIAMVNEDYEQAAGHVHRFLTLD 137
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: UPI001C90099C (conserved oligomeric Golgi complex subunit 4-like isoform X1 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C90099C) HSP 1 Score: 49.3 bits (116), Expect = 3.220e-5 Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 1 Query: 13 VSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186 VS VR+LD + RV V D+++L+ CAEGV+ A+ A D +AA +V RF ID Sbjct: 112 VSAKVRQLDRAKTRVAAAQQRVNDLLDLKSCAEGVQTALQAEDFEQAAAHVHRFLAID 169 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11171.751.1 >prot_H-paniculata_contig11171.751.1 ID=prot_H-paniculata_contig11171.751.1|Name=mRNA_H-paniculata_contig11171.751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp MAERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEback to top mRNA from alignment at H-paniculata_contig11171:7105..7758+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11171.751.1 ID=mRNA_H-paniculata_contig11171.751.1|Name=mRNA_H-paniculata_contig11171.751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=654bp|location=Sequence derived from alignment at H-paniculata_contig11171:7105..7758+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11171:7105..7758+ >mRNA_H-paniculata_contig11171.751.1 ID=mRNA_H-paniculata_contig11171.751.1|Name=mRNA_H-paniculata_contig11171.751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig11171:7105..7758+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |