mRNA_H-paniculata_contig11171.751.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11171.751.1
Unique NamemRNA_H-paniculata_contig11171.751.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 6.740e-27
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 1
Query:    1 MAERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186
            MAERVSRSVRRLDDIQMRVQR LALVEDVINLRGCAEGVR AV AGDL EAATYVRRFREID
Sbjct:  141 MAERVSRSVRRLDDIQMRVQRALALVEDVINLRGCAEGVRAAVQAGDLAEAATYVRRFREID 202          
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A4D9D1B9_9STRA (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1B9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.980e-14
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 1
Query:    1 MAERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186
            +AE++S SVR LD+ QMRVQR LA+VED+INL+ CAEGV  A++  DL +A +YVR+F  I+
Sbjct:  156 LAEKMSSSVRELDERQMRVQRVLAMVEDIINLKTCAEGVARALEEDDLLDATSYVRQFHSIE 217          
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A7S2WIB6_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WIB6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.120e-13
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 MAERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186
            ++ERVSR++RRLD  QM VQ  LALVED++NL+ CA+GV  A+   DL +A  YVR+F +ID
Sbjct:   82 LSERVSRTIRRLDRAQMNVQHALALVEDIVNLKDCAQGVITALKEEDLRDATGYVRQFHDID 143          
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: I2CQF7_NANGC (Oligomeric golgi complex component (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQF7_NANGC)

HSP 1 Score: 67.4 bits (163), Expect = 3.500e-13
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
Query:   13 VSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186
            +S SVR LD+ QMRVQR LA+VED+INL+ CAEGV  A++  DL  A +YVR+F  I+
Sbjct:    1 MSSSVRELDERQMRVQRVLAMVEDIINLKTCAEGVARALEEDDLLGATSYVRQFHSIE 58          
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A836CCD6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCD6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.730e-9
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    4 AERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186
            AERVS +VR LD  + R    L  V++ + LRGCAEGVR A+  GDLG A  +VRRF ++D
Sbjct:   93 AERVSGAVRGLDARRARAAAALTRVDEAVELRGCAEGVRGAMARGDLGAAVHHVRRFHQLD 153          
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A507DRY6_9FUNG (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DRY6_9FUNG)

HSP 1 Score: 58.2 bits (139), Expect = 2.400e-8
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 MAERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186
            +AER+S  VR+LD  Q RV+ T+ LVED+  L+ CA+GV+ A+D+GD   A  +V RF   D
Sbjct:   85 LAERISGKVRQLDLEQSRVKATMGLVEDIQELKKCADGVQKALDSGDFELAGHFVSRFLNYD 146          
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A0G4F532_VITBC (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F532_VITBC)

HSP 1 Score: 56.6 bits (135), Expect = 8.390e-8
Identity = 25/60 (41.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    4 AERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREI 183
            +E++S  VRRLD ++ R++  L LVED+++L+ CAEGV  A+  GD   AA ++ ++R +
Sbjct:   89 SEKLSSRVRRLDTVRSRIEAALQLVEDLLDLKNCAEGVESAMGRGDYETAAKHIAKYRSL 148          
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A077Z8M1_TRITR (Conserved oligomeric Golgi complex subunit 4 n=3 Tax=Trichuris TaxID=36086 RepID=A0A077Z8M1_TRITR)

HSP 1 Score: 50.4 bits (119), Expect = 1.260e-5
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 MAERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186
            +A+ +S  VR +D  + RV   L  VED+++LR C EGVR+A+   D  +AA++V RF  +D
Sbjct:   76 IADGISSKVRDMDVAKTRVIECLQFVEDILDLRTCTEGVRIAMANEDYEQAASHVHRFLTLD 137          
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: A0A5S6Q4M1_TRIMR (Conserved oligomeric Golgi complex subunit 4 n=3 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q4M1_TRIMR)

HSP 1 Score: 49.3 bits (116), Expect = 3.220e-5
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 MAERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186
            +A+ +S  VR +D  + RV   L  VED+++LR C EGVR+A+   D  +AA +V RF  +D
Sbjct:   76 VADGISSKVRDMDVAKTRVVECLQFVEDILDLRTCTEGVRIAMVNEDYEQAAGHVHRFLTLD 137          
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Match: UPI001C90099C (conserved oligomeric Golgi complex subunit 4-like isoform X1 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C90099C)

HSP 1 Score: 49.3 bits (116), Expect = 3.220e-5
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   13 VSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGEAATYVRRFREID 186
            VS  VR+LD  + RV      V D+++L+ CAEGV+ A+ A D  +AA +V RF  ID
Sbjct:  112 VSAKVRQLDRAKTRVAAAQQRVNDLLDLKSCAEGVQTALQAEDFEQAAAHVHRFLAID 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11171.751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5J803_9PHAE6.740e-2793.55Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A4D9D1B9_9STRA8.980e-1458.06Conserved oligomeric Golgi complex subunit 4 n=2 T... [more]
A0A7S2WIB6_9STRA3.120e-1356.45Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
I2CQF7_NANGC3.500e-1358.62Oligomeric golgi complex component (Fragment) n=1 ... [more]
A0A836CCD6_9STRA1.730e-952.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A507DRY6_9FUNG2.400e-848.39Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A0G4F532_VITBC8.390e-841.67Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
A0A077Z8M1_TRITR1.260e-541.94Conserved oligomeric Golgi complex subunit 4 n=3 T... [more]
A0A5S6Q4M1_TRIMR3.220e-541.94Conserved oligomeric Golgi complex subunit 4 n=3 T... [more]
UPI001C90099C3.220e-544.83conserved oligomeric Golgi complex subunit 4-like ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11171contigH-paniculata_contig11171:7105..7758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue2.1e-22
Seed eggNOG ortholog2880.D7FT87
KEGG koko:K20291
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Golgi vesicle prefusion complex stabilization
EggNOG OGsKOG0412@1,KOG0412@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.5429533-CDS-H-paniculata_contig11171:7104..72151622928822.5429533-CDS-H-paniculata_contig11171:7104..7215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11171 7105..7215 +
1691480633.8830297-CDS-H-paniculata_contig11171:7104..72151691480633.8830297-CDS-H-paniculata_contig11171:7104..7215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11171 7105..7215 +
1622928822.5594804-CDS-H-paniculata_contig11171:7683..77581622928822.5594804-CDS-H-paniculata_contig11171:7683..7758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11171 7684..7758 +
1691480633.8940666-CDS-H-paniculata_contig11171:7683..77581691480633.8940666-CDS-H-paniculata_contig11171:7683..7758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11171 7684..7758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11171.751.1prot_H-paniculata_contig11171.751.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11171 7105..7758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11171.751.1

>prot_H-paniculata_contig11171.751.1 ID=prot_H-paniculata_contig11171.751.1|Name=mRNA_H-paniculata_contig11171.751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MAERVSRSVRRLDDIQMRVQRTLALVEDVINLRGCAEGVRMAVDAGDLGE
AATYVRRFREID
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mRNA from alignment at H-paniculata_contig11171:7105..7758+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11171.751.1 ID=mRNA_H-paniculata_contig11171.751.1|Name=mRNA_H-paniculata_contig11171.751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=654bp|location=Sequence derived from alignment at H-paniculata_contig11171:7105..7758+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGAGCGTGTGAGCAGGTCCGTACGGAGGTTGGACGATATCCAGAT GCGGGTGCAGCGGACTCTCGCGTTAGTCGAAGACGTTATTAATCTCAGGG GATGCGCGGAGGTAAGTAAGCACAGGGTATTATCTGGCGACAACGTACTG TACAACACTTCCACCCCCCCGGACAAACACGAATATTTGCAAATGGTTTT CACAAAAAATGAAAGTATTCGCCTGACATTCAGAATGAGCGGACAAATAA AATAAAGTACCCACCCCTATTCATTCGATTTATGAGTATTATTAGCACTC ATGAATGGTCCGGGGCATAAATCTATTAATAGTGGGCTTTGGATGGACGT AGTTCCAGTCTTTGGTCTGTTGTGGAAAATGACACATTGTGTTTGTGATG TATCAGTGCTTGGTCAATCACTGGTGGGGTACTAAAGCCCTCGAAAAACA GTGTAACGATTCAGAAGGGAACACTACCCCCATAATATTGGACAGTGTTA TACTGTGTCGTGTGCGTGCATCCCTCGTTTTTCTTGTACTATCGTGCGAT GCCACATAATGGTGCCGTACCTTCTGCAGGGCGTGCGGATGGCCGTGGAC GCGGGCGATCTCGGAGAGGCTGCCACGTATGTCCGACGCTTCCGGGAAAT CGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig11171:7105..7758+

>mRNA_H-paniculata_contig11171.751.1 ID=mRNA_H-paniculata_contig11171.751.1|Name=mRNA_H-paniculata_contig11171.751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig11171:7105..7758+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGAGCGTGTGAGCAGGTCCGTACGGAGGTTGGACGATATCCAGAT
GCGGGTGCAGCGGACTCTCGCGTTAGTCGAAGACGTTATTAATCTCAGGG
GATGCGCGGAGATGGCCGAGCGTGTGAGCAGGTCCGTACGGAGGTTGGAC
GATATCCAGATGCGGGTGCAGCGGACTCTCGCGTTAGTCGAAGACGTTAT
TAATCTCAGGGGATGCGCGGAGGGCGTGCGGATGGCCGTGGACGCGGGCG
ATCTCGGAGAGGCTGCCACGTATGTCCGACGCTTCCGGGAAATCGACGGC
GTGCGGATGGCCGTGGACGCGGGCGATCTCGGAGAGGCTGCCACGTATGT
CCGACGCTTCCGGGAAATCGAC
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