mRNA_H-paniculata_contig27411.7502.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27411.7502.1
Unique NamemRNA_H-paniculata_contig27411.7502.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig27411.7502.1 vs. uniprot
Match: A0A6H5JQJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ4_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.740e-20
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:   37 EHDNDILLLEGRCNDVSLSTRKAAMTALSSLLVARPEDEDLQQAWVRAMLPLAGDPEQTCQ 219
            EH+ D  LL+ RCND+SLSTRKAAM ALSSLL+ RP DE LQ+AWV ++LPLAGDPEQTCQ
Sbjct:  546 EHEADFELLQERCNDISLSTRKAAMGALSSLLMLRPSDETLQKAWVSSVLPLAGDPEQTCQ 606
[Close]
BLAST of mRNA_H-paniculata_contig27411.7502.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.460e-20
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:   37 EHDNDILLLEGRCNDVSLSTRKAAMTALSSLLVARPEDEDLQQAWVRAMLPLAGDPEQTCQ 219
            EH+ D  LL+ RCND+SLSTRKAAM ALSSLL+ RP DE LQ+AWV ++LPLAGDPEQTCQ
Sbjct:  682 EHEADFELLQERCNDMSLSTRKAAMGALSSLLMLRPSDESLQKAWVSSVLPLAGDPEQTCQ 742
[Close]
BLAST of mRNA_H-paniculata_contig27411.7502.1 vs. uniprot
Match: A0A8C1HFJ5_CYPCA (Condensin-2 complex subunit D3 n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1HFJ5_CYPCA)

HSP 1 Score: 53.5 bits (127), Expect = 1.640e-6
Identity = 28/72 (38.89%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:   22 RDSAVEHD------NDILLLEGRCNDVSLSTRKAAMTALSSLLVARPEDEDLQQAWVRAMLPLAGDPEQTCQ 219
            R SA+EH        ++ +L  RC D ++S +K AM  L  LL A PE+ ++Q+AW+R +LP   D E + Q
Sbjct:  531 RKSALEHRVISCSAENLSILSDRCRDPAVSVKKKAMQCLMDLLAALPENREVQEAWLRGVLPAVMDSESSVQ 602
[Close]
BLAST of mRNA_H-paniculata_contig27411.7502.1 vs. uniprot
Match: A0A8C2CT10_CYPCA (Condensin-2 complex subunit D3 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2CT10_CYPCA)

HSP 1 Score: 51.2 bits (121), Expect = 1.070e-5
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:   49 DILLLEGRCNDVSLSTRKAAMTALSSLLVARPEDEDLQQAWVRAMLPLAGDPEQTCQ 219
            ++ +L  RC D ++S +K AM  L  LL A PE+ ++Q+AW+R +LP   D E + Q
Sbjct:  519 NLSILSDRCRDPAVSVKKKAMQCLMDLLAALPENREVQEAWLRGVLPAVMDSESSVQ 575
[Close]
BLAST of mRNA_H-paniculata_contig27411.7502.1 vs. uniprot
Match: A0A8C2H3Q3_CYPCA (Condensin-2 complex subunit D3 n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2H3Q3_CYPCA)

HSP 1 Score: 51.2 bits (121), Expect = 1.070e-5
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:   49 DILLLEGRCNDVSLSTRKAAMTALSSLLVARPEDEDLQQAWVRAMLPLAGDPEQTCQ 219
            ++ +L  RC D ++S +K AM  L  LL A PE+ ++Q+AW+R +LP   D E + Q
Sbjct:  553 NLSILSDRCRDPAVSVKKKAMQCLMDLLAALPENREVQEAWLRGVLPAVMDSESSVQ 609
[Close]
BLAST of mRNA_H-paniculata_contig27411.7502.1 vs. uniprot
Match: A0A672MFI8_SINGR (Condensin-2 complex subunit D3 n=9 Tax=Cyprininae TaxID=2743694 RepID=A0A672MFI8_SINGR)

HSP 1 Score: 50.8 bits (120), Expect = 1.460e-5
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:   49 DILLLEGRCNDVSLSTRKAAMTALSSLLVARPEDEDLQQAWVRAMLPLAGDPEQTCQ 219
            ++ +L  RC D ++S +K AM  L  LL A PE+ ++Q+AW+R +LP   D E + Q
Sbjct:  497 NLSILSDRCRDPAVSVKKKAMQCLIDLLAALPENREVQEAWLRGVLPAVMDSESSVQ 553
[Close]
BLAST of mRNA_H-paniculata_contig27411.7502.1 vs. uniprot
Match: A0A672MJP4_SINGR (Condensin-2 complex subunit D3 n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672MJP4_SINGR)

HSP 1 Score: 50.8 bits (120), Expect = 1.460e-5
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:   49 DILLLEGRCNDVSLSTRKAAMTALSSLLVARPEDEDLQQAWVRAMLPLAGDPEQTCQ 219
            ++ +L  RC D ++S +K AM  L  LL A PE+ ++Q+AW+R +LP   D E + Q
Sbjct:  497 NLSILSDRCRDPAVSVKKKAMQCLIDLLAALPENREVQEAWLRGVLPAVMDSESSVQ 553
[Close]
BLAST of mRNA_H-paniculata_contig27411.7502.1 vs. uniprot
Match: A0A672MFC5_SINGR (Condensin-2 complex subunit D3 n=4 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672MFC5_SINGR)

HSP 1 Score: 50.8 bits (120), Expect = 1.460e-5
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:   49 DILLLEGRCNDVSLSTRKAAMTALSSLLVARPEDEDLQQAWVRAMLPLAGDPEQTCQ 219
            ++ +L  RC D ++S +K AM  L  LL A PE+ ++Q+AW+R +LP   D E + Q
Sbjct:  566 NLSILSDRCRDPAVSVKKKAMQCLIDLLAALPENREVQEAWLRGVLPAVMDSESSVQ 622
[Close]
BLAST of mRNA_H-paniculata_contig27411.7502.1 vs. uniprot
Match: A0A8C5MU16_9ANUR (Condensin-2 complex subunit D3 n=5 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5MU16_9ANUR)

HSP 1 Score: 49.7 bits (117), Expect = 3.750e-5
Identity = 22/57 (38.60%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   49 DILLLEGRCNDVSLSTRKAAMTALSSLLVARPEDEDLQQAWVRAMLPLAGDPEQTCQ 219
            D+  L  RC D ++S RK A+++L+ LL A+P++  +Q+AW+  ++P+  D E T Q
Sbjct:  552 DLNTLPDRCRDPAVSVRKQALSSLTELLQAQPQNVQIQKAWLTGLVPVVLDTESTVQ 608
[Close]
BLAST of mRNA_H-paniculata_contig27411.7502.1 vs. uniprot
Match: A0A553MTJ8_9TELE (Condensin-2 complex subunit D3 n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553MTJ8_9TELE)

HSP 1 Score: 48.5 bits (114), Expect = 9.590e-5
Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:   46 NDILLLEGRCNDVSLSTRKAAMTALSSLLVARPEDEDLQQAWVRAMLPLAGDPEQTCQ 219
            +++ +L  RC D ++S +K A   L  LL A PE+ ++Q+AW+R +LP   D E + Q
Sbjct:  574 DNLSILSERCRDSAVSVKKKAFQCLMELLAALPENTEVQEAWLRGLLPALLDSESSVQ 631
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27411.7502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JQJ4_9PHAE1.740e-2073.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP86_ECTSI2.460e-2073.77Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A8C1HFJ5_CYPCA1.640e-638.89Condensin-2 complex subunit D3 n=2 Tax=Cyprinus ca... [more]
A0A8C2CT10_CYPCA1.070e-540.35Condensin-2 complex subunit D3 n=1 Tax=Cyprinus ca... [more]
A0A8C2H3Q3_CYPCA1.070e-540.35Condensin-2 complex subunit D3 n=2 Tax=Cyprinus ca... [more]
A0A672MFI8_SINGR1.460e-540.35Condensin-2 complex subunit D3 n=9 Tax=Cyprininae ... [more]
A0A672MJP4_SINGR1.460e-540.35Condensin-2 complex subunit D3 n=1 Tax=Sinocycloch... [more]
A0A672MFC5_SINGR1.460e-540.35Condensin-2 complex subunit D3 n=4 Tax=Sinocycloch... [more]
A0A8C5MU16_9ANUR3.750e-538.60Condensin-2 complex subunit D3 n=5 Tax=Leptobrachi... [more]
A0A553MTJ8_9TELE9.590e-537.93Condensin-2 complex subunit D3 n=1 Tax=Danionella ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27411contigH-paniculata_contig27411:780..2804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue4.1e-17
Seed eggNOG ortholog2880.D7FP86
KEGG koko:K11491
Hectar predicted targeting categoryother localisation
EggNOG free text desc.meiotic chromosome condensation
EggNOG OGsKOG0413@1,KOG0413@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size221
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.5986516-CDS-H-paniculata_contig27411:779..8811622929827.5986516-CDS-H-paniculata_contig27411:779..881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27411 780..881 +
1691481028.871097-CDS-H-paniculata_contig27411:779..8811691481028.871097-CDS-H-paniculata_contig27411:779..881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27411 780..881 +
1622929827.6198123-CDS-H-paniculata_contig27411:2687..28041622929827.6198123-CDS-H-paniculata_contig27411:2687..2804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27411 2688..2804 +
1691481028.8921738-CDS-H-paniculata_contig27411:2687..28041691481028.8921738-CDS-H-paniculata_contig27411:2687..2804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27411 2688..2804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27411.7502.1prot_H-paniculata_contig27411.7502.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27411 780..2804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27411.7502.1

>prot_H-paniculata_contig27411.7502.1 ID=prot_H-paniculata_contig27411.7502.1|Name=mRNA_H-paniculata_contig27411.7502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
DGGALGWRDSAVEHDNDILLLEGRCNDVSLSTRKAAMTALSSLLVARPED
EDLQQAWVRAMLPLAGDPEQTCQ
back to top

mRNA from alignment at H-paniculata_contig27411:780..2804+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27411.7502.1 ID=mRNA_H-paniculata_contig27411.7502.1|Name=mRNA_H-paniculata_contig27411.7502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2025bp|location=Sequence derived from alignment at H-paniculata_contig27411:780..2804+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGTGGTGCTCTGGGATGGAGGGATTCTGCCGTGGAACATGACAACGA
CATTTTGTTGCTAGAAGGGAGATGCAACGACGTGTCGCTCTCCACGCGTA
AGGTGATAGCACTATATATATATATATATATATATATATATATATAACTT
TTTTTTCTCTGTCTTGGAGTCGTCCTACGGTAGAGGGAGGTCAACTGTTC
AACGAAAGCCGCTTCGTGAAAGAGATGAAAAAATAAAGGCAATCAAAACC
ATGTCAATTGCATGTGCTTGCGCGTCCCTAAAGGTGCACAGTCCACGAGT
TTAAATTGGGATTTCTGCTCAAGGGGGAGCAGCAACAACGCCTCTCCCCC
CCCCCAAAAAAAAAAAAAAGACAAAACAAGAAGCGCGATCGTGTTCTCTC
AACGTGGCTCCTTCGTTAAGCAAAACGGCTCAAATACCCCCCCACCCCCC
CTACCGTAGGATGACTACTCGTATATTTGGCCTTCACGTTTACTTGTATT
TTCTATTCGTTTTATCGAGGAGGGGGGGGGGTCTGTGTAGACACTTTCGC
TCCGTCCATTTAAAATTTCATTTTTTTCGTAAATAGTTTTTTTTTTTTTT
TTTTTTTTTTTTTTCCCTTTTGTGTGTTCCAATTTTTGTTTTAATCTACT
TTTGAATACAGTCAACGGGTACTTGCGATTTCAGACGGGAAAAAAAATTA
CAACGCTCAATTAGTTTATTACACAAAGTTGGCGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTATTTTTTCAGTGTGCATGCAGGGTGTTCACGGAGAGA
GCATCGTTGATCAATGCATGTCATCAATGATGACGTTCAGATACCGTTAC
TTGAGCTGTCATGTCATGCAGTCGGAGGCTCCGTCCAAAAAATATGCGGA
TTGAGACTCATGATGTTGTGAATTATTCACACGTCGGAAACATGAGCTTT
GGAGAAGGTCTGTCCGTTTTAAATGAAACGTGTGCCAAACGATGTAAGAG
CGTGTATCTTCCACGGTGATGACCGGTTATATCAGATCAGATCAGATCGT
ACCGCTCAAGTGCATCGATATTTGGCGAAAGATGATAACACTAGTTCTGA
TCCGTACACCTTTGTCCGAAGCTATCGGTAGAAGCGGTACGATCTGTACA
TGGTGGTCACGGCTGATCGTTATCCCCACTGATCGTACGTATATGGTTGT
TCACCTCAGATCTGTATATTACAGATATTTATTACATGTGTGTAGTCTGA
CTCGTACCGATCTTGGTCGGTCCGAACCATGGTATCCTCCCAAAGCAGAC
CGTTCTTGCTAAATGTTGATGATCTAGAATGATCTATATTGTTTCAATTG
ATTTTATCCATTTTTTCCCAGGAGCATCGAACATTGCATGGTATGCTCTA
TTATAACAGAACGAAATAGAGCATATTAAGTCGAAACTGTACTATTTTCT
TGTTCGATCGGAATCGTGGAGTCATCCCGGCGTTGTGCACCGTGTCATCG
GCACAAAATGAAACCTCGGGTGTCCAATATTGCACGAGGCCACCTTCGCT
GGGCGACGAGAAATTAATACCGCAGTGTAGTAAGTACCCTTCCGTCACAA
GTGATCTAATCTGATCTAACTATTTGGTCGCGTCTGATGTGCACCAGCGG
ATCTGATCGACCCAACTGTTACAAACATCGAGGGCAGAGTGCAATTTGCC
CAGTATACGTTCGTTACACCCCATGAAATAATTCGCAAATGGTTCAATCT
GGTTTGATCTGATCTGATACATTCACTCTATTGGATCCTTGTAAACCTTG
AGAGCCCGGCTACGATCGTCCCTGTATATCCTACACCCATTAGTTACGCC
ACTCCACAAACCATCTAATCTGCTGTGCTCAACGTGAGCCTTGTATCCAT
TTTGGCAGGCTGCGATGACTGCGCTGTCATCATTGCTCGTGGCCAGACCG
GAAGACGAAGACCTTCAGCAGGCATGGGTGAGGGCGATGCTTCCGCTAGC
AGGCGACCCGGAGCAAACCTGCCAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig27411:780..2804+

>mRNA_H-paniculata_contig27411.7502.1 ID=mRNA_H-paniculata_contig27411.7502.1|Name=mRNA_H-paniculata_contig27411.7502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig27411:780..2804+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGTGGTGCTCTGGGATGGAGGGATTCTGCCGTGGAACATGACAACGA
CATTTTGTTGCTAGAAGGGAGATGCAACGACGTGTCGCTCTCCACGCGTA
AGGATGGTGGTGCTCTGGGATGGAGGGATTCTGCCGTGGAACATGACAAC
GACATTTTGTTGCTAGAAGGGAGATGCAACGACGTGTCGCTCTCCACGCG
TAAGGCTGCGATGACTGCGCTGTCATCATTGCTCGTGGCCAGACCGGAAG
ACGAAGACCTTCAGCAGGCATGGGTGAGGGCGATGCTTCCGCTAGCAGGC
GACCCGGAGCAAACCTGCCAGGCTGCGATGACTGCGCTGTCATCATTGCT
CGTGGCCAGACCGGAAGACGAAGACCTTCAGCAGGCATGGGTGAGGGCGA
TGCTTCCGCTAGCAGGCGACCCGGAGCAAACCTGCCAG
back to top