mRNA_H-paniculata_contig27356.7487.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27356.7487.1
Unique NamemRNA_H-paniculata_contig27356.7487.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27356.7487.1 vs. uniprot
Match: A0A6A4C9T3_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4C9T3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.720e-12
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 MAGASVFCTLDLLQGYWQMPLDPQEQEIFTMVTANGVYTPTRVPQGAK 144
            + GA+VF +LD  +GYWQ+PL P  QE FT +T  G+YTPTRVP GAK
Sbjct:  453 LEGATVFFSLDWFRGYWQLPLHPDSQEFFTFITHRGMYTPTRVPMGAK 500
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BLAST of mRNA_H-paniculata_contig27356.7487.1 vs. uniprot
Match: A0A6A3DJI3_9STRA (Reverse transcriptase domain-containing protein n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DJI3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.120e-11
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 MAGASVFCTLDLLQGYWQMPLDPQEQEIFTMVTANGVYTPTRVPQGAK 144
            + GA+VF +LD  +GYWQ+PL P  QE F  +T  G+YTPTRVP GAK
Sbjct:  268 LEGATVFFSLDWFRGYWQLPLHPDSQEFFIFITHRGMYTPTRVPMGAK 315
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BLAST of mRNA_H-paniculata_contig27356.7487.1 vs. uniprot
Match: A0A6A3FJD6_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3FJD6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.530e-11
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 MAGASVFCTLDLLQGYWQMPLDPQEQEIFTMVTANGVYTPTRVPQGA 141
            + GA VF  LD L+GYWQ+PL P  QE+++ VT  G+YTPTRVP GA
Sbjct:  355 LEGARVFFVLDWLRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGA 401
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BLAST of mRNA_H-paniculata_contig27356.7487.1 vs. uniprot
Match: H3H555_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H555_PHYRM)

HSP 1 Score: 66.2 bits (160), Expect = 2.100e-11
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 MAGASVFCTLDLLQGYWQMPLDPQEQEIFTMVTANGVYTPTRVPQGA 141
            + GA VF  LD  +GYWQ+PL P  QEI++ VT  G+YTPTRVP GA
Sbjct:   29 LEGAKVFFVLDWFRGYWQLPLHPDSQEIYSFVTHRGIYTPTRVPMGA 75
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BLAST of mRNA_H-paniculata_contig27356.7487.1 vs. uniprot
Match: H3H656_PHYRM (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H656_PHYRM)

HSP 1 Score: 66.2 bits (160), Expect = 2.100e-11
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 MAGASVFCTLDLLQGYWQMPLDPQEQEIFTMVTANGVYTPTRVPQGA 141
            + GA VF  LD  +GYWQ+PL P  QEI++ VT  G+YTPTRVP GA
Sbjct:  755 LEGAKVFFVLDWFRGYWQLPLHPDSQEIYSFVTHRGIYTPTRVPMGA 801
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BLAST of mRNA_H-paniculata_contig27356.7487.1 vs. uniprot
Match: H3H4S7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4S7_PHYRM)

HSP 1 Score: 66.2 bits (160), Expect = 2.100e-11
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 MAGASVFCTLDLLQGYWQMPLDPQEQEIFTMVTANGVYTPTRVPQGA 141
            + GA VF  LD  +GYWQ+PL P  QEI++ VT  G+YTPTRVP GA
Sbjct:  757 LEGAKVFFVLDWFRGYWQLPLHPDSQEIYSFVTHRGIYTPTRVPMGA 803
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BLAST of mRNA_H-paniculata_contig27356.7487.1 vs. uniprot
Match: H3H7W2_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7W2_PHYRM)

HSP 1 Score: 65.5 bits (158), Expect = 3.920e-11
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 MAGASVFCTLDLLQGYWQMPLDPQEQEIFTMVTANGVYTPTRVPQGA 141
            + GA VF  LD  +GYWQ+PL P  QE+++ VT  G+YTPTRVP GA
Sbjct:  188 LEGAKVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGA 234
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BLAST of mRNA_H-paniculata_contig27356.7487.1 vs. uniprot
Match: H3GLY9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLY9_PHYRM)

HSP 1 Score: 65.5 bits (158), Expect = 3.920e-11
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 MAGASVFCTLDLLQGYWQMPLDPQEQEIFTMVTANGVYTPTRVPQGA 141
            + GA VF  LD  +GYWQ+PL P  QE+++ VT  G+YTPTRVP GA
Sbjct:  758 LEGAKVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGA 804
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BLAST of mRNA_H-paniculata_contig27356.7487.1 vs. uniprot
Match: A0A6A4AUS0_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4AUS0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.770e-11
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 MAGASVFCTLDLLQGYWQMPLDPQEQEIFTMVTANGVYTPTRVPQGA 141
            + GA VF  LD  +GYWQ+PL P  QE+++ VT  G+YTPTRVP GA
Sbjct:  134 LEGARVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGA 180
[Close]
BLAST of mRNA_H-paniculata_contig27356.7487.1 vs. uniprot
Match: A0A6A3GVC4_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3GVC4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.320e-11
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 MAGASVFCTLDLLQGYWQMPLDPQEQEIFTMVTANGVYTPTRVPQGA 141
            + GA VF  LD  +GYWQ+PL P  QE+++ VT  G+YTPTRVP GA
Sbjct:   98 LEGARVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGA 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27356.7487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A4C9T3_9STRA1.720e-1260.42Reverse transcriptase domain-containing protein (F... [more]
A0A6A3DJI3_9STRA1.120e-1158.33Reverse transcriptase domain-containing protein n=... [more]
A0A6A3FJD6_9STRA1.530e-1159.57Reverse transcriptase domain-containing protein n=... [more]
H3H555_PHYRM2.100e-1159.57Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H656_PHYRM2.100e-1159.57Reverse transcriptase domain-containing protein n=... [more]
H3H4S7_PHYRM2.100e-1159.57Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
H3H7W2_PHYRM3.920e-1157.45Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
H3GLY9_PHYRM3.920e-1157.45Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A4AUS0_9STRA4.770e-1157.45Reverse transcriptase domain-containing protein (F... [more]
A0A6A3GVC4_9STRA5.320e-1157.45Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27356contigH-paniculata_contig27356:673..825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue2.2e-09
Seed eggNOG ortholog164328.Phyra85588
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size153
Cds size153
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.3039181-CDS-H-paniculata_contig27356:672..8251622929825.3039181-CDS-H-paniculata_contig27356:672..825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27356 673..825 -
1691481028.0354447-CDS-H-paniculata_contig27356:672..8251691481028.0354447-CDS-H-paniculata_contig27356:672..825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27356 673..825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27356.7487.1prot_H-paniculata_contig27356.7487.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27356 673..825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27356.7487.1

>prot_H-paniculata_contig27356.7487.1 ID=prot_H-paniculata_contig27356.7487.1|Name=mRNA_H-paniculata_contig27356.7487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MAGASVFCTLDLLQGYWQMPLDPQEQEIFTMVTANGVYTPTRVPQGAKCD
*
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mRNA from alignment at H-paniculata_contig27356:673..825-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27356.7487.1 ID=mRNA_H-paniculata_contig27356.7487.1|Name=mRNA_H-paniculata_contig27356.7487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig27356:673..825- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGGAGCCAGCGTGTTCTGCACGCTGGATCTGCTGCAGGGCTACTG
GCAGATGCCCCTCGATCCTCAAGAGCAAGAGATCTTCACGATGGTCACGG
CCAACGGGGTATACACGCCTACCAGAGTTCCTCAGGGAGCTAAATGCGAC
TAG
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Coding sequence (CDS) from alignment at H-paniculata_contig27356:673..825-

>mRNA_H-paniculata_contig27356.7487.1 ID=mRNA_H-paniculata_contig27356.7487.1|Name=mRNA_H-paniculata_contig27356.7487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig27356:673..825- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGGAGCCAGCGTGTTCTGCACGCTGGATCTGCTGCAGGGCTACTG
GCAGATGCCCCTCGATCCTCAAGAGCAAGAGATCTTCACGATGGTCACGG
CCAACGGGGTATACACGCCTACCAGAGTTCCTCAGGGAGCTAAATGCGAC
TAGATGGCGGGAGCCAGCGTGTTCTGCACGCTGGATCTGCTGCAGGGCTA
CTGGCAGATGCCCCTCGATCCTCAAGAGCAAGAGATCTTCACGATGGTCA
CGGCCAACGGGGTATACACGCCTACCAGAGTTCCTCAGGGAGCTAAATGC
GACTAG
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