mRNA_H-paniculata_contig11169.748.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11169.748.1
Unique NamemRNA_H-paniculata_contig11169.748.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11169.748.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.260e-32
Identity = 65/127 (51.18%), Postives = 80/127 (62.99%), Query Frame = 2
Query:  194 QVLGVLQVLGRGNCFDDVTNLSGMSVKMAQTFFHAFCEKFVYELYDTWIKLPEGEDLKRVMAMYDELGFISAMESGDVTHIHWGYAPVSHSRL*TGTEKIPTLAYEIIVDHSGRALCVTKGYEGVRT 574
            QVL  LQ LGRGNCFDD+  LS MS  MA   FH FC+ F  EL++  I LP G     VM MYD+LG   A+ S DVTHI WG  P +  R  TG E  PT+AY++ VDH+GRA+ +T G   ++T
Sbjct:    3 QVLTTLQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGVHTIKT 129          
BLAST of mRNA_H-paniculata_contig11169.748.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.700e-32
Identity = 65/124 (52.42%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  194 QVLGVLQVLGRGNCFDDVTNLSGMSVKMAQTFFHAFCEKFVYELYDTWIKLPEGEDLKRVMAMYDELGFISAMESGDVTHIHWGYAPVSHSRL*TGTEKIPTLAYEIIVDHSGRALCVTKGYEG 565
            QVL  LQ+LGRGNCFDD+  LS MS  MA   FH FC+ F  EL++  I LP G     VM MYD+LG   A+ S DVTHI WG  P +  R  TG E  PT+AY++ VDH+GRA+ +T G+ G
Sbjct:    3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTG 126          
BLAST of mRNA_H-paniculata_contig11169.748.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.110e-31
Identity = 62/124 (50.00%), Postives = 86/124 (69.35%), Query Frame = 2
Query:  194 QVLGVLQVLGRGNCFDDVTNLSGMSVKMAQTFFHAFCEKFVYELYDTWIKLPEGEDLKRVMAMYDELGFISAMESGDVTHIHWGYAPVSHSRL*TGTEKIPTLAYEIIVDHSGRALCVTKGYEG 565
            QVL  LQ+L RGN F D+ ++S +S +   + FH FC+ F  ELYD ++ LP GEDL++VM  YD +GF  A+ S DVTHI+WG  P + +R+ TG E  PT+A+++ VDHSGR L VT+G+ G
Sbjct:   83 QVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTG 206          
BLAST of mRNA_H-paniculata_contig11169.748.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 2.770e-30
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 2
Query:  194 QVLGVLQVLGRGNCFDDVTNLSGMSVKMAQTFFHAFCEKFVYELYDTWIKLPEGEDLKRVMAMYDELGFISAMESGDVTHIHWGYAPVSHSRL*TGTEKIPTLAYEIIVDHSGRALCVTKGYEG 565
            +VL  LQ+L RGN F D+ ++S +S +   + FH FC+ F  ELYD ++ LP GEDL++VM  YD +GF  A+ S DVTHI+WG  P + +R+ TG E  PT+A+++ VDHSGR L VT+G+ G
Sbjct:  174 KVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTG 297          
BLAST of mRNA_H-paniculata_contig11169.748.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 5.090e-30
Identity = 69/159 (43.40%), Postives = 92/159 (57.86%), Query Frame = 2
Query:  194 QVLGVLQVLGRGNCFDDVTNLSGMSVKMAQTFFHAFCEKFVYELYDTWIKLPEGEDLKRVMAMYDELGFISAMESGDVTHIHWGYAPVSHSRL*TGTEKIPTLAYEIIVDHSGRALCVTKGYEGVRTHWFNRLIATFRTKDMGFDSGHV--HNSWWILS 664
            QVLGVLQ LGRGNCF DV N S MS   A+  FH FC  F   L+ TWI+LPEGEDL+RV + Y  LG+  A+ S D TH+ W     S +    G E   T+ +E I DH+GR L  TKGY G      ++ +  ++  +M  ++G V  H   W+++
Sbjct:    5 QVLGVLQALGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEDLRRVESTYRSLGYPGAVGSIDCTHVPWERCAFSETTTHKGKEGYTTVVFEAICDHAGRILASTKGYPGAEN---DKTVVIYKY-EMYDETGDVTKHTGGWLIA 159          
BLAST of mRNA_H-paniculata_contig11169.748.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 5.160e-30
Identity = 63/124 (50.81%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  194 QVLGVLQVLGRGNCFDDVTNLSGMSVKMAQTFFHAFCEKFVYELYDTWIKLPEGEDLKRVMAMYDELGFISAMESGDVTHIHWGYAPVSHSRL*TGTEKIPTLAYEIIVDHSGRALCVTKGYEG 565
            ++L  LQ+LGRGNCFDD+  LS MS  MA   FH FC+ F  EL++  I LP G     VM MYD+LG   A+ S DVTHI WG  P +  R  TG E  PT+AY++ VDH+GRA+ +T G+ G
Sbjct:  250 KILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTG 373          
BLAST of mRNA_H-paniculata_contig11169.748.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 8.000e-28
Identity = 65/141 (46.10%), Postives = 83/141 (58.87%), Query Frame = 2
Query:  149 SVFRSVYSCQHALVPQVLGVLQVLGRGNCFDDVTNLSGMSVKMAQTFFHAFCEKFVYELYDTWIKLPEGED--LKRVMAMYDELGFISAMESGDVTHIHWGYAPVSHSRL*TGTEKIPTLAYEIIVDHSGRALCVTKGYEG 565
            +V  +V    H +  +VL  L +LGRGNCF  +  +S MS K  Q  FH FC  F  E+YD  I LP  E   L  VM  YD LGF  A+ S DVTHI W   P + +R  TG E  PT+AY++ VDH+GRA+ VT+G+ G
Sbjct:   70 AVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTG 210          
BLAST of mRNA_H-paniculata_contig11169.748.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.250e-27
Identity = 62/120 (51.67%), Postives = 74/120 (61.67%), Query Frame = 2
Query:  206 VLQVLGRGNCFDDVTNLSGMSVKMAQTFFHAFCEKFVYELYDTWIKLPEGEDLKRVMAMYDELGFISAMESGDVTHIHWGYAPVSHSRL*TGTEKIPTLAYEIIVDHSGRALCVTKGYEG 565
            V QVLG+GNCFDDV  LS MS  MAQ  FH FC  F  E++D  I LP G  L  VM ++ +LG+  A  S DVTHI W   P +  R  TG E  PT+AY++ VDH GR L VT G+ G
Sbjct:   40 VPQVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTG 159          
BLAST of mRNA_H-paniculata_contig11169.748.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.360e-27
Identity = 61/129 (47.29%), Postives = 81/129 (62.79%), Query Frame = 2
Query:  179 HALVPQVLGVLQVLGRGNCFDDVTNLSGMSVKMAQTFFHAFCEKFVYELYDTWIKLPEGE--DLKRVMAMYDELGFISAMESGDVTHIHWGYAPVSHSRL*TGTEKIPTLAYEIIVDHSGRALCVTKGY 559
            H +  +VL  L +LGRGNCF  +  +S MS K  QT FH FC+ F  E+YD  I LP  +  +L  VM  YD LGF  AM S DVTHI W   P + +R  TG E +PT+ Y++ V+H+GRA+ VT+G+
Sbjct:   93 HPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGF 221          
BLAST of mRNA_H-paniculata_contig11169.748.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.100e-26
Identity = 63/131 (48.09%), Postives = 79/131 (60.31%), Query Frame = 2
Query:  179 HALVPQVLGVLQVLGRGNCFDDVTNLSGMSVKMAQTFFHAFCEKFVYELYDTWIKLPEGE--DLKRVMAMYDELGFISAMESGDVTHIHWGYAPVSHSRL*TGTEKIPTLAYEIIVDHSGRALCVTKGYEG 565
            H +  +VL  L +LGRGN F  + NLS MS    Q  FH FCE F  E+YD  I LP  E  +L RVM  Y++LGF  AM S DVTHI W   P +  R  TG E  PT+ Y++ V+H+GR L VT+G+ G
Sbjct:  122 HPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTG 252          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11169.748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6N4_9PHAE1.260e-3251.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE3.700e-3252.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE2.110e-3150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE2.770e-3049.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY35_9PHAE5.090e-3043.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE5.160e-3050.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE8.000e-2846.10DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K796_9PHAE1.250e-2751.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE3.360e-2747.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE2.100e-2648.09Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11169contigH-paniculata_contig11169:2866..4587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1722
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11169.748.1prot_H-paniculata_contig11169.748.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11169 3128..3340 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928821.8968391-UTR-H-paniculata_contig11169:2865..31271622928821.8968391-UTR-H-paniculata_contig11169:2865..3127Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11169 2866..3127 +
1691480633.6302042-UTR-H-paniculata_contig11169:2865..31271691480633.6302042-UTR-H-paniculata_contig11169:2865..3127Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11169 2866..3127 +
1622928821.9157546-UTR-H-paniculata_contig11169:3340..45871622928821.9157546-UTR-H-paniculata_contig11169:3340..4587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11169 3341..4587 +
1691480633.6488485-UTR-H-paniculata_contig11169:3340..45871691480633.6488485-UTR-H-paniculata_contig11169:3340..4587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11169 3341..4587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928821.9063308-CDS-H-paniculata_contig11169:3127..33401622928821.9063308-CDS-H-paniculata_contig11169:3127..3340Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11169 3128..3340 +
1691480633.6398132-CDS-H-paniculata_contig11169:3127..33401691480633.6398132-CDS-H-paniculata_contig11169:3127..3340Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11169 3128..3340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11169.748.1

>prot_H-paniculata_contig11169.748.1 ID=prot_H-paniculata_contig11169.748.1|Name=mRNA_H-paniculata_contig11169.748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MSVKMAQTFFHAFCEKFVYELYDTWIKLPEGEDLKRVMAMYDELGFISAM
ESGDVTHIHWGYAPVSHSRL*
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mRNA from alignment at H-paniculata_contig11169:2866..4587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11169.748.1 ID=mRNA_H-paniculata_contig11169.748.1|Name=mRNA_H-paniculata_contig11169.748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1722bp|location=Sequence derived from alignment at H-paniculata_contig11169:2866..4587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGGTTGGGCTGCAGCGGAGGTGGCCCAGCAGGCAGCACAATCTAAAAG AGCTAAAGAAACCGATGGTGGAGTCACTTTTGAATCAAAGTCAGGTAACT ACGATTGGAAACGCTTTCATCAGTTTCATGTAATAGACAGACGCGCAAAG TGTTTTTCGCTCTGTGTACTCTTGCCAGCATGCCCTTGTGCCGCAGGTCC TGGGGGTCTTGCAAGTGTTGGGGAGAGGCAACTGCTTCGACGACGTGACG AATTTGTCTGGCATGAGCGTTAAAATGGCACAAACGTTTTTCCATGCCTT CTGCGAGAAGTTTGTGTACGAGCTGTACGACACGTGGATCAAGCTGCCAG AGGGAGAAGACCTGAAGCGCGTTATGGCGATGTACGACGAGTTGGGGTTC ATTAGTGCGATGGAATCCGGGGATGTTACTCACATCCACTGGGGCTACGC GCCTGTTTCACACTCCAGACTGTAAACTGGGACAGAGAAGATTCCCACGC TGGCGTACGAGATTATTGTGGACCACTCCGGTCGAGCTCTCTGCGTCACC AAAGGGTACGAGGGCGTGAGGACTCACTGGTTCAATAGGTTAATTGCTAC CTTTCGAACAAAGGATATGGGGTTTGATTCCGGTCATGTTCATAATAGCT GGTGGATTTTATCTTGAACAGATAGGCTTGCAAGGGGAGATGAACCCCGC AGATCTCTGAGGTGAACAGGAAGGATCGTGCCAACACCATATCTTTTGTT CAAAAGGTGGCATTATGGATTGTCGCCTTTGTCGGAGTATGTCATAGTAT GTGTGACGTACTGTTTATGTTGGGTTAGCCTAGCTGGCCCTTTTATGTCA CTCCATATTTTTATAAACCCTTCGATCCTCTCTGCTTTGGGTCACGGTCA TGTGGTCTGCGGACCTATGGCCGTGGGAGTCGACATCCATCTTCCATGAA CTGCCGAAGCTCACAGTTATTCAACACGCTAGCGAAGGATTAAGTTGAGT GCTTAACTCTGGTGAGCTTGTTCACGAAGAGCATGGAGACGCCTGTTAGT CGGTCTTCAGTGTGCAGGCTAGAGGCGAGGACGTTGGGATTTATAGAGTC CAAACTGTAGTTCTGCGAGCGATAGTGGGTCGAGGATGTTCACGGAGGAC CTCCCCTCCCGAGGTTGCCACCGTAAGGGACATCGCAAGTCGCTGACCTA AGGGTTGCAGCGCATGGCCATTGACCACAACAACGCCGGTTTGATGTCTT GGTGTTTCGTTGTGCGCGGGACTTAACAATACCGCACGATCAATTGCTCC GTGGCGTGAGAGTCGCCATCGTGAGGATAAGCGGTGTTTTGTTTGATGGG ACTCAAACTACATCTGCCCCGGCGGAGGCGAAGGAGCCTACTGCCATAGT CGTTGCCAAGAGGTGACCCAGTAGAACAGCATCGTCGAGAATCGGTGACT GTTCACAGCAGGGCCAGAGGAGGCTACTGCGTACGGACGCGGCCGAGCGG CGCCGACGAGCCGAAATTAGCGGCGAATTTCTGCTCAAGGCTGGTTGGGG CGGATGGATTTTCCTCCGACTGTTCGAGTGTCTGTCGTGCGTCGTCTTTG AGGGCAGGCGGTAGCAATCTGTGTAGTGCTCGTTTGGCGTCGCCATTCAG GAGGCTGCTACGGCGGCAGCCGTTCAGGGCTTGTGGTACATATGGGTTGT GAACTTCGTGTGTAATTTTCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig11169:2866..4587+

>mRNA_H-paniculata_contig11169.748.1 ID=mRNA_H-paniculata_contig11169.748.1|Name=mRNA_H-paniculata_contig11169.748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig11169:2866..4587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGTTAAAATGGCACAAACGTTTTTCCATGCCTTCTGCGAGAAGTT
TGTGTACGAGCTGTACGACACGTGGATCAAGCTGCCAGAGGGAGAAGACC
TGAAGCGCGTTATGGCGATGTACGACGAGTTGGGGTTCATTAGTGCGATG
GAATCCGGGGATGTTACTCACATCCACTGGGGCTACGCGCCTGTTTCACA
CTCCAGACTGTAAATGAGCGTTAAAATGGCACAAACGTTTTTCCATGCCT
TCTGCGAGAAGTTTGTGTACGAGCTGTACGACACGTGGATCAAGCTGCCA
GAGGGAGAAGACCTGAAGCGCGTTATGGCGATGTACGACGAGTTGGGGTT
CATTAGTGCGATGGAATCCGGGGATGTTACTCACATCCACTGGGGCTACG
CGCCTGTTTCACACTCCAGACTGTAA
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