mRNA_H-paniculata_contig27280.7464.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27280.7464.1
Unique NamemRNA_H-paniculata_contig27280.7464.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27280.7464.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 280 bits (716), Expect = 6.830e-88
Identity = 146/372 (39.25%), Postives = 230/372 (61.83%), Query Frame = 1
Query:   67 VRRLRKSLYGLKQSDRNWNNPLDDILVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDNLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRMLGIEVRRDRPNGTITISQGTYIREVLKGYGSDECRGVPTPVEGKVNILAPESADKLSEPNGNSTEYRGMVGSLMCASTGTRPDIAYAVHQAARRMEDPCQEDSSTCKRIFRYLSIVPDLGTTFGGKSNGHGLEGVVADWADYVEDRKSTTGYVFNLNGGAISWCSRKQYLVTWSSTEAEYVAAGEAGKETVYLRELLGSISFGCRGSMTLFEDNKSAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKGVSRVQFQRLRNL 1179
            V +L KS YGLKQS R WN+ LD+ L  IG  ++ +D C+Y   ++G     +VA++VD++++AG+  EK+ + K +I++RF++KD+G L  +LG++V ++  +G + I Q TY   ++K YG + C+ V TPV+    +++     +L     N  EY+  VGSL+  S+ TRPDI +AV+  A+   +   E  +  KRIFRYL    + G  +   +N   +    ADWA  + DRKST+GY F +NG A+SW S+KQ  V  S+ EAEYVA   A +E +++R+LL  ++      MT++EDN+SAI +SK    H R+KHI +++H +R+ + +  L + Y  TG  LAD+ TKG+ + QF++LR L
Sbjct:   13 VCKLNKSRYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELF----NKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376          
BLAST of mRNA_H-paniculata_contig27280.7464.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM)

HSP 1 Score: 274 bits (701), Expect = 4.920e-85
Identity = 148/376 (39.36%), Postives = 225/376 (59.84%), Query Frame = 1
Query:   67 VRRLRKSLYGLKQSDRNWNNPLDDILVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDNLVIAGRREKVDEF-KHNISQRFRMKDLGSLSRMLGIEVRRDRPNGTITISQGTYIREVLKGYGSDECRGVPTPVEGKVNILAPESADKLS-EPNGNSTEYRGMVGSLMCASTGTRPDIAYAVHQAARRMEDPCQEDSSTCKRIFRYLSIVPDLGTTFGGKSNGHGLEGVV-ADWADYVEDRKSTTGYVFNLNGGAISWCSRKQYLVTWSSTEAEYVAAGEAGKETVYLRELLGSIS-FGCRGSMTLFEDNKSAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKGVSRVQFQRLRNLL 1182
            V +L++SLYGLKQS R WN  +DD ++ +G ++  +D C+Y  RD  G+  + VA+YVD+LV+A   +++ E  KH +S+RF M DLG L   LG+E++  R +G +T+ Q  +++ +L  +G  + + V TP +  + +           E    +  YR +VG+LM     TRPD+A AV   ++   DPC       KR+ RYL   P  G  F  + +  G+ G   ADWA  +E R+ST+GY F +NGG ISW S+KQ  V  SSTEAEY+A  EA +E V+L+  L  +       ++ ++EDN+ +I L+K    H RTKHI +R+H +RE + +G + L+Y+ T D LAD++TK ++ VQFQ LR+ L
Sbjct:   33 VCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAITAVQFQVLRSKL 405          
BLAST of mRNA_H-paniculata_contig27280.7464.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 280 bits (716), Expect = 1.040e-84
Identity = 147/394 (37.31%), Postives = 240/394 (60.91%), Query Frame = 1
Query:    1 VKEELFVKLPPEFSPSSRGIPFVRRLRKSLYGLKQSDRNWNNPLDDILVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDNLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRMLGIEVRRDRPNGTITISQGTYIREVLKGYGSDECRGVPTPVEGKVNILAPESADKLSEPNGNSTEYRGMVGSLMCASTGTRPDIAYAVHQAARRMEDPCQEDSSTCKRIFRYLSIVPDLGTTFGGKSNGHGLEGVVADWADYVEDRKSTTGYVFNLNGGAISWCSRKQYLVTWSSTEAEYVAAGEAGKETVYLRELLGSISFGCRGSMTLFEDNKSAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKGVSRVQFQRLRNL 1179
            +++E+++K P  F    +      +L KSLYGLKQS R WN+ LD+ L  IG  ++ +D C+Y   ++G     +VA++VD++++AG+  EK+ + K +I++RF++KD+G L  +LG++V ++  +  + I Q TY   ++K YG + C+ V TPV+    +++     +L     N  E++  VGSL+  S+ TRPDI +AV+  A+   +P  E  +  KRIFRYL    + G  +   +N   +    ADWA  + DRKST+GY F +NG A+SW S+KQ  V  S+  AEYVA   A +E +++R+LL  ++      MT++EDN+SAI +SK    H R+KHI ++++ +R+ + +  L + Y  TG  LAD+ TKG+ + QF++LR L
Sbjct:  267 LEDEVYMKQPEGFEVKGKEH-LACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELF----NKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 651          
BLAST of mRNA_H-paniculata_contig27280.7464.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 287 bits (735), Expect = 1.130e-83
Identity = 151/394 (38.32%), Postives = 242/394 (61.42%), Query Frame = 1
Query:    1 VKEELFVKLPPEFSPSSRGIPFVRRLRKSLYGLKQSDRNWNNPLDDILVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDNLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRMLGIEVRRDRPNGTITISQGTYIREVLKGYGSDECRGVPTPVEGKVNILAPESADKLSEPNGNSTEYRGMVGSLMCASTGTRPDIAYAVHQAARRMEDPCQEDSSTCKRIFRYLSIVPDLGTTFGGKSNGHGLEGVVADWADYVEDRKSTTGYVFNLNGGAISWCSRKQYLVTWSSTEAEYVAAGEAGKETVYLRELLGSISFGCRGSMTLFEDNKSAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKGVSRVQFQRLRNL 1179
            +++E+++K P  F    +    V +L KSLYGLKQS R WN+ LD+ L  IG  ++ +D C+Y   ++G     +VA++VD++++AG+  EK+ + K +I++RF++KD+G L  +LG++V ++  +  + I Q TY   ++K YG + C+ V TPV+    +++     +L     N  EY+  VGSL+  S+ TRPDI +AV+  A+   +P  E  +  KRIFRYL    + G  +   +N   +    ADWA  + DRKST+GY F +NG A+SW S+KQ  V  S+ EAEYVA   A +E +++R+LL  ++      MT++EDN+SAI +SK    H R+KHI +++H +R+ + +  L + Y  TG  LAD+ TKG+ + QF++LR L
Sbjct:  881 LEDEVYMKQPEGFEVKGKEH-LVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELF----NKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 1265          
BLAST of mRNA_H-paniculata_contig27280.7464.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 276 bits (706), Expect = 7.140e-83
Identity = 157/397 (39.55%), Postives = 237/397 (59.70%), Query Frame = 1
Query:    1 VKEELFVKLPPEFSPSSRGIPFVRRLRKSLYGLKQSDRNWNNPLDDILVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDNLVIAGRRE-KVDEFKHNISQRFRMKDLGSLSRMLGIEVRRDRPNGTITISQGTYIREVLKGYGSDECRGVPTPVEGKVNIL-APESADKLSEPNGNSTEYRGMVGSLMCASTGTRPDIAYAVHQAARRMEDPCQEDSSTCKRIFRYLSIVPDLGTTFGGKSNGHGLEGVV-ADWADYVEDRKSTTGYVFNLNGGAISWCSRKQYLVTWSSTEAEYVAAGEAGKETVYLRELLGSISFGCRGSMTLFEDNKSAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKGVSRVQFQRLRNLL 1182
            +KEE+++K    F    +    V RLR+S+YGLKQS R WN+ LD  L  +G  ++  D C+Y  ++EGGE   ++AVYVD++++AG+ + K++E K  ++++F+MKD+G L   LG++V     +  I I Q  Y + VL+ +G +  +   TPV     +  A + + ++ + N     Y+  VG L+  ST TRPDIAYAV   AR   DP +E     KRI RYL+   D+G  + G        G   ADWA  ++DRKST+GYVF ++  AISW S+KQ  V  S+ EAEY+A   A +E V+L++LL  +     G M + EDN++AI ++K +  H R KHI +++H IRE +    + L+Y  T + +ADI TKG+S VQF +LR +L
Sbjct:  103 LKEEVYMKQTEGFIEKGKEH-LVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVN-----YQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKML 491          
BLAST of mRNA_H-paniculata_contig27280.7464.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM)

HSP 1 Score: 264 bits (674), Expect = 2.780e-81
Identity = 148/389 (38.05%), Postives = 229/389 (58.87%), Query Frame = 1
Query:    1 VKEELFVKLPPEF----SPSSRGIPFVRRLRKSLYGLKQSDRNWNNPLDDILVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDNLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRMLGIEVRRDRPNGTITISQGTYIREVLKGYGSDECRGVPTPVEGKVNILAPESADKLSEPNGNSTEYRGMVGSLMCASTGTRPDIAYAVHQAARRMEDPCQEDSSTCKRIFRYLSIVPDLGTTFGGKSNGHGLEGVVADWADYVEDRKSTTGYVFNLNGGAISWCSRKQYLVTWSSTEAEYVAAGEAGKETVYLRELLGSISFGCRGSMTLFEDNKSAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKGVSR 1152
            V+EEL++  P  F    +P+ + +     L ++LYG KQ+ R WN+ L+  L G G  RS  D C+Y  R +   +  ++ VYVD+L+I  R + ++ E K  + + F +K+LG L   LGIE+ R+R + TI ++Q  YI+ + + +G ++C+ V TP +    ++ P + D++  P      YR +VG+LM  +T TRPDIA AV + A+  E   +      KRI +YL    DLG  F G + G  +    A WA  ++ R+STTGYVF LNG AISW S++Q  V  SSTEAEY+A   A +E V+LR+LL  +   C  + T+F+DN+  I L+K    H RTKHI +++H +RE + + ++ L+Y  T + +AD  TK ++R
Sbjct:   17 VEEELYMDQPDGFEDQVNPTKKCL-----LMQALYGTKQAARQWNSKLNKHLEGQGFHRSAADPCVYVRRSDSKFS--IIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKP-AEDEVFVPR---YPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGELIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 394          
BLAST of mRNA_H-paniculata_contig27280.7464.1 vs. uniprot
Match: A0A0C9VSW1_SPHS4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VSW1_SPHS4)

HSP 1 Score: 272 bits (696), Expect = 3.370e-81
Identity = 156/390 (40.00%), Postives = 222/390 (56.92%), Query Frame = 1
Query:    1 VKEELFVKLPPEFSPSSRGIPFVRRLRKSLYGLKQSDRNWNNPLDDILVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDNLVI-AGRREKVDEFKHNISQRFRMKDLGSLSRMLGIEVRRDRPNGTITISQGTYIREVLKGYGSDECRGVPTPVEGKVNILAPESADKLSEPNGNSTEYRGMVGSLMCASTGTRPDIAYAVHQAARRMEDPCQEDSSTCKRIFRYLSIVPDLGTTFGGKSNGHGLEGVVADWADYVEDRKSTTGYVFNLNGGAISWCSRKQYLVTWSSTEAEYVAAGEAGKETVYLRELLGSISFGCRGSMTLFEDNKSAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKGVSRVQFQR 1167
            +KEE+++ LPP F    R    + +L+K LYGLKQ+ R W   L      +G  R  ++  ++   D G    ++VAVYVD+L+I +   E V + K ++  +F M DLG    +LG+E+ RDRP+ T++ISQ  Y  E+L+ +G  +C+  PTP+E  V++       KLSE   +S  Y+  VGSLM    GT PD+A++V   ++    P +E     KR+ RY+    DLG  F G  N      + ADWA    +R S TGYV  L G  ISW S+KQ     SSTEAEY+AA  A KE ++LR  +  + F       L+ DN+SAI L K S  H RTKHI VR+H IRE + +  + L Y+ T DQ+AD LTKG+S+V+  +
Sbjct:  326 LKEEIYMNLPPGF----RKPGVIWKLKKGLYGLKQASREWYKKLCTEFESMGFRRCNSNHAVFIKDDNG--IRVVVAVYVDDLLIFSSSIEAVKKVKKDLKGKFEMTDLGEAHWILGMEITRDRPSHTLSISQKAYFAEILERFGMSDCKPAPTPMEVGVSLR------KLSEAEVDSQHYQSAVGSLMYGMIGTHPDVAHSVGVLSQHCATPGEEHEKGNKRVLRYIKGTTDLGLVFIGSGNTKIEVFIDADWAQDKNNRHSLTGYVCTLAGATISWSSKKQSSTAQSSTEAEYMAATHAAKEALWLRMFMRELGFEQDSPTPLYVDNQSAITLVKNSEFHSRTKHINVRYHFIRENVEDEQIELVYIPTEDQVADALTKGLSKVKLDK 703          
BLAST of mRNA_H-paniculata_contig27280.7464.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 270 bits (691), Expect = 3.630e-81
Identity = 154/397 (38.79%), Postives = 235/397 (59.19%), Query Frame = 1
Query:    1 VKEELFVKLPPEFSPSSRGIPFVRRLRKSLYGLKQSDRNWNNPLDDILVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDNLVIAGRRE-KVDEFKHNISQRFRMKDLGSLSRMLGIEVRRDRPNGTITISQGTYIREVLKGYGSDECRGVPTPVEGKVNIL-APESADKLSEPNGNSTEYRGMVGSLMCASTGTRPDIAYAVHQAARRMEDPCQEDSSTCKRIFRYLSIVPDLGTTFGGKSNGHGLEGVV-ADWADYVEDRKSTTGYVFNLNGGAISWCSRKQYLVTWSSTEAEYVAAGEAGKETVYLRELLGSISFGCRGSMTLFEDNKSAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKGVSRVQFQRLRNLL 1182
            +KEE+++K P  F    +    V RLR+S+ GLKQS R WN+ LD  L  +G  ++  D C+Y  ++EGGE   ++AVYVD++++AG+ + K++E K  ++++F+MKD+G     LG++V +   +  I I Q  Y + VL+ +G +  +   TPV     +  A + + ++ + N     Y+  VG L+  ST TRPDIAYAV   AR    P +E     KRI RYL+   D+G  + G        G   ADWA  ++DRKST+GYVF ++  AISW S+KQ  V  S+ EAEY+    A +E V+L++LL  +     G M + EDN++AI ++K +  H R KHI +++H IRE +    + L+Y  T + +ADI TKG+S VQF +LR +L
Sbjct:  251 LKEEVYMKQPEGFIDKGKEH-LVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVN-----YQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMTLASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLRKML 639          
BLAST of mRNA_H-paniculata_contig27280.7464.1 vs. uniprot
Match: H3H8W9_PHYRM (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8W9_PHYRM)

HSP 1 Score: 273 bits (699), Expect = 7.750e-81
Identity = 147/376 (39.10%), Postives = 224/376 (59.57%), Query Frame = 1
Query:   67 VRRLRKSLYGLKQSDRNWNNPLDDILVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDNLVIAGRREKV-DEFKHNISQRFRMKDLGSLSRMLGIEVRRDRPNGTITISQGTYIREVLKGYGSDECRGVPTPVEGKVNILAPESADKLS-EPNGNSTEYRGMVGSLMCASTGTRPDIAYAVHQAARRMEDPCQEDSSTCKRIFRYLSIVPDLGTTFGGKSNGHGLEGVV-ADWADYVEDRKSTTGYVFNLNGGAISWCSRKQYLVTWSSTEAEYVAAGEAGKETVYLRELLGSIS-FGCRGSMTLFEDNKSAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKGVSRVQFQRLRNLL 1182
            V +L++SLYGLKQS R WN  +DD ++ +G ++  +D C+Y  RD  G+  + VA+YVD+LV+A   +++ +  KH +S+RF M DLG L   LG+E++ D  +G +T+ Q  +++ +L  +G  + + V TP +  + +           E    +  YR  VG+LM     TRPD+A AV   ++   DPC       KR+ RYL   P  G  F  + +  G+ G   ADWA  +E R+ST+GY F +NGG ISW S+KQ  V  SSTEAEY+A  EA +E V+L+  L  +       ++ ++EDN+ +I L+K    H RTKHI +R+H +RE + +G + L+Y+ T D LAD++TK ++ VQFQ LR+ L
Sbjct:  434 VCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAITAVQFQVLRSKL 806          
BLAST of mRNA_H-paniculata_contig27280.7464.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 257 bits (656), Expect = 4.380e-79
Identity = 148/368 (40.22%), Postives = 217/368 (58.97%), Query Frame = 1
Query:   73 RLRKSLYGLKQSDRNWNNPLDDILVGIGLERSITDSCLYFSRDEGGETNLLVAVYVDNLV-IAGRREKVDEFKHNISQRFRMKDLGSLSRMLGIEVRRDRPNGTITISQGTYIREVLKGYGSDECRGVPTPVEGKVNILAPESADKLSEPNGNSTEYRGMVGSLMCASTGTRPDIAYAVHQAARRMEDPCQEDSSTCKRIFRYLSIVPDLGTTFGGKSNGHGLEGVVADWADYVEDRKSTTGYVFNLNGGAISWCSRKQYLVTWSSTEAEYVAAGEAGKETVYLRELLGSISFGCRGSMTLFEDNKSAINLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKGVSRVQFQRLR 1173
            +++KS+YGLKQS R WN      ++ +G ++S +D C++    +  E   ++AVYVD+L+ I    E +DE K  + +R++MKDLG LS +LGI V +D+    I + Q  YI  +LK YG D+   V TP +  V +   +  D +S P   ST Y+ MVGSL+ A+  TRPDIA AV   ++   +P     +  KRI RYL    +L   F    N   +    ADWA  ++DR STTG +F L+GGA+SW S+KQ  V  S+ EAEYVA  +A +E  +LR LL  +    + ++ L EDN+ AI ++K    H RTKHI +R+H IRE +++G + L+Y  T    ADILTK ++R +F+  R
Sbjct:    2 QIKKSIYGLKQSPRCWNKEFTTFMMDLGFKQSSSDPCVFVRLSQELE---IIAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKL---KKDDGVSNPVDPST-YQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGNKDLIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGMVTKPTVIL-EDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPTDKMKADILTKPLARQKFENFR 361          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27280.7464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9M6E1_PARCT6.830e-8839.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GB98_PHYRM4.920e-8539.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HZ03_PARCT1.040e-8437.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT1.130e-8338.32Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9KES8_PARCT7.140e-8339.55Retrovirus-related Pol poly from transposon TNT 1-... [more]
H3GB17_PHYRM2.780e-8138.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C9VSW1_SPHS43.370e-8140.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7JEY7_PARCT3.630e-8138.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H8W9_PHYRM7.750e-8139.10Integrase catalytic domain-containing protein n=3 ... [more]
A0A0S7JP25_9TELE4.380e-7940.22POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27280contigH-paniculata_contig27280:279..1529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score273.5
Seed ortholog evalue1.6e-70
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size1188
Cds size1188
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929822.222324-CDS-H-paniculata_contig27280:278..7991622929822.222324-CDS-H-paniculata_contig27280:278..799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27280 279..799 +
1691481026.6135752-CDS-H-paniculata_contig27280:278..7991691481026.6135752-CDS-H-paniculata_contig27280:278..799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27280 279..799 +
1622929822.2610836-CDS-H-paniculata_contig27280:862..15291622929822.2610836-CDS-H-paniculata_contig27280:862..1529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27280 863..1529 +
1691481026.6229644-CDS-H-paniculata_contig27280:862..15291691481026.6229644-CDS-H-paniculata_contig27280:862..1529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27280 863..1529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27280.7464.1prot_H-paniculata_contig27280.7464.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27280 279..1529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27280.7464.1

>prot_H-paniculata_contig27280.7464.1 ID=prot_H-paniculata_contig27280.7464.1|Name=mRNA_H-paniculata_contig27280.7464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=396bp
VKEELFVKLPPEFSPSSRGIPFVRRLRKSLYGLKQSDRNWNNPLDDILVG
IGLERSITDSCLYFSRDEGGETNLLVAVYVDNLVIAGRREKVDEFKHNIS
QRFRMKDLGSLSRMLGIEVRRDRPNGTITISQGTYIREVLKGYGSDECRG
VPTPVEGKVNILAPESADKLSEPNGNSTEYRGMVGSLMCASTGTRPDIAY
AVHQAARRMEDPCQEDSSTCKRIFRYLSIVPDLGTTFGGKSNGHGLEGVV
ADWADYVEDRKSTTGYVFNLNGGAISWCSRKQYLVTWSSTEAEYVAAGEA
GKETVYLRELLGSISFGCRGSMTLFEDNKSAINLSKGSGAHCRTKHIGVR
WHGIREWIREGILALKYMQTGDQLADILTKGVSRVQFQRLRNLLM*
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mRNA from alignment at H-paniculata_contig27280:279..1529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27280.7464.1 ID=mRNA_H-paniculata_contig27280.7464.1|Name=mRNA_H-paniculata_contig27280.7464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1251bp|location=Sequence derived from alignment at H-paniculata_contig27280:279..1529+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAAAGAAGAGCTGTTTGTTAAGCTACCCCCCGAGTTTTCGCCTTCCTC CCGAGGCATACCATTTGTGCGCCGCCTGCGTAAAAGCCTGTACGGCCTCA AGCAGAGCGACCGAAACTGGAATAACCCCCTTGACGATATTCTCGTTGGG ATAGGACTCGAACGTTCCATTACCGACTCATGCCTGTACTTTTCCCGGGA CGAAGGGGGAGAGACAAACCTTCTGGTGGCCGTGTATGTTGACAACCTGG TCATTGCTGGTCGTCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGT CAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCTCGCGCATGTTGGGAAT AGAAGTACGACGTGACCGCCCTAATGGTACCATAACCATATCGCAGGGTA CCTATATCCGCGAGGTACTAAAAGGATATGGTTCTGACGAGTGTCGAGGA GTACCCACCCCTGTAGAGGGAAAAGTGAACATTTTGGCACCCGAGTCGGC CGACAAGCTCTCCGAACCGAAGTCACTCGGAGCTGTACTGCCGGACATAG GCGCAGGAGTACAAGAAAGCAGCAGAGCGAGAAGTGGCAATTCGACTGAA TACAGAGGCATGGTAGGATCACTCATGTGCGCCTCAACAGGAACTAGACC TGATATAGCATACGCGGTACACCAAGCAGCACGTCGTATGGAGGACCCAT GTCAAGAAGACTCCAGTACATGCAAGCGCATTTTTCGTTATCTCAGTATT GTCCCTGACCTTGGTACTACGTTCGGTGGTAAGAGTAATGGTCACGGTCT GGAAGGAGTCGTTGCTGATTGGGCGGATTATGTCGAGGACCGAAAGTCCA CAACAGGATATGTTTTCAATCTGAACGGTGGTGCAATAAGTTGGTGCTCT AGGAAGCAATATTTAGTCACGTGGTCCAGTACAGAGGCAGAGTACGTTGC TGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTAGGGAGTTACTAGGAT CGATAAGTTTCGGATGCAGGGGGAGCATGACATTGTTTGAGGACAATAAA TCAGCTATTAATCTCAGTAAGGGATCTGGCGCACACTGCAGGACAAAGCA CATTGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCGGGAAGGAATAT TGGCATTGAAGTACATGCAGACCGGCGATCAACTTGCTGACATTTTAACG AAAGGAGTAAGCAGAGTACAGTTTCAGAGACTGAGAAATTTACTCATGTG A
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Coding sequence (CDS) from alignment at H-paniculata_contig27280:279..1529+

>mRNA_H-paniculata_contig27280.7464.1 ID=mRNA_H-paniculata_contig27280.7464.1|Name=mRNA_H-paniculata_contig27280.7464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2376bp|location=Sequence derived from alignment at H-paniculata_contig27280:279..1529+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAAAGAAGAGCTGTTTGTTAAGCTACCCCCCGAGTTTTCGCCTTCCTC
CCGAGGCATACCATTTGTGCGCCGCCTGCGTAAAAGCCTGTACGGCCTCA
AGCAGAGCGACCGAAACTGGAATAACCCCCTTGACGATATTCTCGTTGGG
ATAGGACTCGAACGTTCCATTACCGACTCATGCCTGTACTTTTCCCGGGA
CGAAGGGGGAGAGACAAACCTTCTGGTGGCCGTGTATGTTGACAACCTGG
TCATTGCTGGTCGTCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGT
CAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCTCGCGCATGTTGGGAAT
AGAAGTACGACGTGACCGCCCTAATGGTACCATAACCATATCGCAGGGTA
CCTATATCCGCGAGGTACTAAAAGGATATGGTTCTGACGAGTGTCGAGGA
GTACCCACCCCTGTAGAGGGAAAAGTGAACATTTTGGCACCCGAGTCGGC
CGACAAGCTCTCCGAACCGAAGTAAAAGAAGAGCTGTTTGTTAAGCTACC
CCCCGAGTTTTCGCCTTCCTCCCGAGGCATACCATTTGTGCGCCGCCTGC
GTAAAAGCCTGTACGGCCTCAAGCAGAGCGACCGAAACTGGAATAACCCC
CTTGACGATATTCTCGTTGGGATAGGACTCGAACGTTCCATTACCGACTC
ATGCCTGTACTTTTCCCGGGACGAAGGGGGAGAGACAAACCTTCTGGTGG
CCGTGTATGTTGACAACCTGGTCATTGCTGGTCGTCGTGAGAAAGTAGAC
GAGTTCAAGCATAACATAAGTCAGCGTTTTAGGATGAAAGACTTGGGCTC
TCTCTCGCGCATGTTGGGAATAGAAGTACGACGTGACCGCCCTAATGGTA
CCATAACCATATCGCAGGGTACCTATATCCGCGAGGTACTAAAAGGATAT
GGTTCTGACGAGTGTCGAGGAGTACCCACCCCTGTAGAGGGAAAAGTGAA
CATTTTGGCACCCGAGTCGGCCGACAAGCTCTCCGAACCGAATGGCAATT
CGACTGAATACAGAGGCATGGTAGGATCACTCATGTGCGCCTCAACAGGA
ACTAGACCTGATATAGCATACGCGGTACACCAAGCAGCACGTCGTATGGA
GGACCCATGTCAAGAAGACTCCAGTACATGCAAGCGCATTTTTCGTTATC
TCAGTATTGTCCCTGACCTTGGTACTACGTTCGGTGGTAAGAGTAATGGT
CACGGTCTGGAAGGAGTCGTTGCTGATTGGGCGGATTATGTCGAGGACCG
AAAGTCCACAACAGGATATGTTTTCAATCTGAACGGTGGTGCAATAAGTT
GGTGCTCTAGGAAGCAATATTTAGTCACGTGGTCCAGTACAGAGGCAGAG
TACGTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTAGGGAGTT
ACTAGGATCGATAAGTTTCGGATGCAGGGGGAGCATGACATTGTTTGAGG
ACAATAAATCAGCTATTAATCTCAGTAAGGGATCTGGCGCACACTGCAGG
ACAAAGCACATTGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCGGGA
AGGAATATTGGCATTGAAGTACATGCAGACCGGCGATCAACTTGCTGACA
TTTTAACGAAAGGAGTAAGCAGAGTACAGTTTCAGAGACTGAGAAATTTA
CTCATGTGATGGCAATTCGACTGAATACAGAGGCATGGTAGGATCACTCA
TGTGCGCCTCAACAGGAACTAGACCTGATATAGCATACGCGGTACACCAA
GCAGCACGTCGTATGGAGGACCCATGTCAAGAAGACTCCAGTACATGCAA
GCGCATTTTTCGTTATCTCAGTATTGTCCCTGACCTTGGTACTACGTTCG
GTGGTAAGAGTAATGGTCACGGTCTGGAAGGAGTCGTTGCTGATTGGGCG
GATTATGTCGAGGACCGAAAGTCCACAACAGGATATGTTTTCAATCTGAA
CGGTGGTGCAATAAGTTGGTGCTCTAGGAAGCAATATTTAGTCACGTGGT
CCAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGACG
GTATATCTTAGGGAGTTACTAGGATCGATAAGTTTCGGATGCAGGGGGAG
CATGACATTGTTTGAGGACAATAAATCAGCTATTAATCTCAGTAAGGGAT
CTGGCGCACACTGCAGGACAAAGCACATTGGAGTGCGCTGGCACGGAATT
CGAGAGTGGATTCGGGAAGGAATATTGGCATTGAAGTACATGCAGACCGG
CGATCAACTTGCTGACATTTTAACGAAAGGAGTAAGCAGAGTACAGTTTC
AGAGACTGAGAAATTTACTCATGTGA
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