mRNA_H-paniculata_contig2726.7459.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2726.7459.1
Unique NamemRNA_H-paniculata_contig2726.7459.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2726.7459.1 vs. uniprot
Match: D8LCC5_ECTSI (Deubiquitinating enzyme A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC5_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.570e-20
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    7 SHSYEHYCAALERQGLCVVPVEGDGNCLFRSVSHQIYGDDSYYTLVRARCMDYME 171
            S  YEHY  AL  +GL VVPVEGDGNCLFRSVSHQ+YGDD+++ LVRARCMDYME
Sbjct:  324 SSRYEHYRRALGSRGLRVVPVEGDGNCLFRSVSHQVYGDDNHHRLVRARCMDYME 378          
BLAST of mRNA_H-paniculata_contig2726.7459.1 vs. uniprot
Match: A0A7S2GE79_9STRA (Deubiquitinating enzyme A n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GE79_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.400e-19
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   10 HSYEHYCAALERQGLCVVPVEGDGNCLFRSVSHQIYGDDSYYTLVRARCMDYME 171
            H YE Y  AL+RQGL V PVEGDGNCLFRSVSHQ+YGDD+++ +VR  CMDYME
Sbjct:  117 HQYERYLQALDRQGLHVQPVEGDGNCLFRSVSHQVYGDDAHHMIVRRLCMDYME 170          
BLAST of mRNA_H-paniculata_contig2726.7459.1 vs. uniprot
Match: A0A485KME7_9STRA (Deubiquitinating enzyme A n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KME7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.250e-18
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   13 SYEHYCAALERQGLCVVPVEGDGNCLFRSVSHQIYGDDSYYTLVRARCMDYMEV 174
            SY+HY AAL+R  L +V VEGDGNCLFRSVSHQ+YGDD ++ LVR  CMDYME+
Sbjct:  167 SYDHYAAALQRLDLGIVAVEGDGNCLFRSVSHQLYGDDRHHLLVRKFCMDYMEL 220          
BLAST of mRNA_H-paniculata_contig2726.7459.1 vs. uniprot
Match: A0A5D6YD11_9STRA (Deubiquitinating enzyme A n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD11_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 9.580e-18
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1
Query:   16 YEHYCAALERQGLCVVPVEGDGNCLFRSVSHQIYGDDSYYTLVRARCMDYME 171
            ++HY  ALER GL + P++GDGNCLFRSVSHQ+YGDD ++  VRA CMDYME
Sbjct:  465 FQHYREALERHGLRICPIDGDGNCLFRSVSHQVYGDDRHHAAVRAMCMDYME 516          
BLAST of mRNA_H-paniculata_contig2726.7459.1 vs. uniprot
Match: T0QKX0_SAPDV (Deubiquitinating enzyme A n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QKX0_SAPDV)

HSP 1 Score: 84.3 bits (207), Expect = 1.670e-17
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    1 TWSHSYEHYCAALERQGLCVVPVEGDGNCLFRSVSHQIYGDDSYYTLVRARCMDYMEV 174
            T   S++ YCAAL +  L +VPV GDGNCLFR++SHQIYGDD ++ +VRA C+DYME 
Sbjct:  166 TTGSSFDTYCAALAQHELALVPVPGDGNCLFRAISHQIYGDDQFHAVVRASCLDYMEA 223          
BLAST of mRNA_H-paniculata_contig2726.7459.1 vs. uniprot
Match: K3WER0_GLOUD (Deubiquitinating enzyme A n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WER0_GLOUD)

HSP 1 Score: 84.3 bits (207), Expect = 1.770e-17
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1
Query:   16 YEHYCAALERQGLCVVPVEGDGNCLFRSVSHQIYGDDSYYTLVRARCMDYME 171
            +E Y  ALE QGL + P+EGDGNCLFRSVSHQ+YGDD ++ +VRA CMDYME
Sbjct:  243 FEQYRNALEAQGLQIYPIEGDGNCLFRSVSHQVYGDDRHHAVVRAMCMDYME 294          
BLAST of mRNA_H-paniculata_contig2726.7459.1 vs. uniprot
Match: A0A835YK15_9STRA (Deubiquitinating enzyme A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK15_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.160e-16
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    7 SHSYEHYCAALERQGLCVVPVEGDGNCLFRSVSHQIYGDDSYYTLVRARCMDYMEV 174
            S  Y  Y  AL + GL V P+ GDGNCLFRSVSHQIYGDD ++ L+R RCMDYME 
Sbjct:  248 SERYTRYLFALRKHGLRVQPIPGDGNCLFRSVSHQIYGDDRFHGLIRERCMDYMEA 303          
BLAST of mRNA_H-paniculata_contig2726.7459.1 vs. uniprot
Match: A0A6G0W5F2_9STRA (Deubiquitinating enzyme A n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5F2_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.980e-16
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1
Query:   13 SYEHYCAALERQGLCVVPVEGDGNCLFRSVSHQIYGDDSYYTLVRARCMDYMEV 174
            SY+ Y  AL+     +VPVEGDGNCLFRSVSHQ+YGDD ++ LVR  CMDYME+
Sbjct:  163 SYDQYSRALQHLDYTIVPVEGDGNCLFRSVSHQLYGDDRHHALVRKFCMDYMEL 216          
BLAST of mRNA_H-paniculata_contig2726.7459.1 vs. uniprot
Match: A0A2D4BI13_PYTIN (Deubiquitinating enzyme A n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BI13_PYTIN)

HSP 1 Score: 80.9 bits (198), Expect = 2.870e-16
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   16 YEHYCAALERQGLCVVPVEGDGNCLFRSVSHQIYGDDSYYTLVRARCMDYME 171
            ++HY  AL  QGL +  VEGDGNCLFRSVSHQIYGDD ++ LVR  CMDYME
Sbjct:  154 FQHYRQALAAQGLSIFAVEGDGNCLFRSVSHQIYGDDRHHGLVRRLCMDYME 205          
BLAST of mRNA_H-paniculata_contig2726.7459.1 vs. uniprot
Match: A0A067BIR8_SAPPC (Deubiquitinating enzyme A n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BIR8_SAPPC)

HSP 1 Score: 79.7 bits (195), Expect = 7.220e-16
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 TWSHSYEHYCAALERQGLCVVPVEGDGNCLFRSVSHQIYGDDSYYTLVRARCMDYMEV 174
            T   +++ YCAAL +  L +V V GDGNCLFR++SHQ+YGDD ++ +VRA CMDYME 
Sbjct:  168 TTGSAFDMYCAALSQHELDLVQVPGDGNCLFRAISHQVYGDDQHHAVVRASCMDYMEA 225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2726.7459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCC5_ECTSI2.570e-2076.36Deubiquitinating enzyme A n=2 Tax=Ectocarpus TaxID... [more]
A0A7S2GE79_9STRA1.400e-1972.22Deubiquitinating enzyme A n=1 Tax=Dictyocha specul... [more]
A0A485KME7_9STRA3.250e-1870.37Deubiquitinating enzyme A n=1 Tax=Aphanomyces stel... [more]
A0A5D6YD11_9STRA9.580e-1867.31Deubiquitinating enzyme A n=1 Tax=Pythium brassicu... [more]
T0QKX0_SAPDV1.670e-1760.34Deubiquitinating enzyme A n=1 Tax=Saprolegnia dicl... [more]
K3WER0_GLOUD1.770e-1769.23Deubiquitinating enzyme A n=1 Tax=Globisporangium ... [more]
A0A835YK15_9STRA1.160e-1664.29Deubiquitinating enzyme A n=1 Tax=Tribonema minus ... [more]
A0A6G0W5F2_9STRA1.980e-1664.81Deubiquitinating enzyme A n=1 Tax=Aphanomyces eute... [more]
A0A2D4BI13_PYTIN2.870e-1669.23Deubiquitinating enzyme A n=1 Tax=Pythium insidios... [more]
A0A067BIR8_SAPPC7.220e-1656.90Deubiquitinating enzyme A n=2 Tax=Saprolegnia para... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2726contigH-paniculata_contig2726:108..308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue8.4e-17
Seed eggNOG ortholog2880.D8LCC5
KEGG koko:K12655
KEGG Pathwayko04622,map04622
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsKOG2605@1,KOG2605@2759
EC3.4.19.12
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929821.813185-CDS-H-paniculata_contig2726:107..3081622929821.813185-CDS-H-paniculata_contig2726:107..308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2726 108..308 -
1691481026.4592075-CDS-H-paniculata_contig2726:107..3081691481026.4592075-CDS-H-paniculata_contig2726:107..308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2726 108..308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2726.7459.1prot_H-paniculata_contig2726.7459.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2726 108..308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2726.7459.1

>prot_H-paniculata_contig2726.7459.1 ID=prot_H-paniculata_contig2726.7459.1|Name=mRNA_H-paniculata_contig2726.7459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
TWSHSYEHYCAALERQGLCVVPVEGDGNCLFRSVSHQIYGDDSYYTLVRA
RCMDYMEVRWCHNSCF*
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mRNA from alignment at H-paniculata_contig2726:108..308-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2726.7459.1 ID=mRNA_H-paniculata_contig2726.7459.1|Name=mRNA_H-paniculata_contig2726.7459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig2726:108..308- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATGGTCGCACAGCTACGAACATTACTGTGCAGCCTTGGAGCGACAGGG CTTGTGCGTGGTGCCGGTGGAGGGAGACGGCAATTGCCTATTCCGCAGCG TGAGTCATCAGATCTACGGAGATGACAGCTACTACACCCTAGTGCGAGCA CGCTGCATGGACTACATGGAGGTACGATGGTGTCATAACAGTTGCTTTTG A
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Coding sequence (CDS) from alignment at H-paniculata_contig2726:108..308-

>mRNA_H-paniculata_contig2726.7459.1 ID=mRNA_H-paniculata_contig2726.7459.1|Name=mRNA_H-paniculata_contig2726.7459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig2726:108..308- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATGGTCGCACAGCTACGAACATTACTGTGCAGCCTTGGAGCGACAGGG
CTTGTGCGTGGTGCCGGTGGAGGGAGACGGCAATTGCCTATTCCGCAGCG
TGAGTCATCAGATCTACGGAGATGACAGCTACTACACCCTAGTGCGAGCA
CGCTGCATGGACTACATGGAGGTACGATGGTGTCATAACAGTTGCTTTTG
AACATGGTCGCACAGCTACGAACATTACTGTGCAGCCTTGGAGCGACAGG
GCTTGTGCGTGGTGCCGGTGGAGGGAGACGGCAATTGCCTATTCCGCAGC
GTGAGTCATCAGATCTACGGAGATGACAGCTACTACACCCTAGTGCGAGC
ACGCTGCATGGACTACATGGAGGTACGATGGTGTCATAACAGTTGCTTTT
GA
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